Wall clock time and date at job start Tue Mar 31 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47081 * 240.00399 * 3 2 1 5 5 H 1.48498 * 109.46704 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46931 * 120.00408 * 3 2 1 7 7 C 1.37877 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99628 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00027 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99922 * 179.97438 * 11 10 9 14 14 H 1.09003 * 110.76658 * 56.80101 * 13 11 10 15 15 C 1.55139 * 110.70883 * 293.59658 * 13 11 10 16 16 C 1.54904 * 101.65629 * 205.96436 * 15 13 11 17 17 N 1.47843 * 104.79405 * 37.06983 * 16 15 13 18 18 C 1.46900 * 110.99888 * 213.63369 * 17 16 15 19 19 C 1.52997 * 109.47463 * 290.84466 * 18 17 16 20 20 F 1.39899 * 109.46784 * 59.99839 * 19 18 17 21 21 F 1.39894 * 109.47145 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.46939 * 299.99990 * 19 18 17 23 23 C 1.47446 * 108.56761 * 335.90448 * 17 16 15 24 24 H 0.96997 * 120.00597 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47178 * 60.00859 * 9 7 2 26 26 H 1.08995 * 109.47333 * 300.00287 * 9 7 2 27 27 H 0.97003 * 120.00023 * 359.97438 * 10 9 7 28 28 H 1.09005 * 110.98834 * 324.05979 * 15 13 11 29 29 H 1.09000 * 110.99151 * 87.83417 * 15 13 11 30 30 H 1.08998 * 110.37178 * 278.24131 * 16 15 13 31 31 H 1.09003 * 110.37142 * 155.89745 * 16 15 13 32 32 H 1.08998 * 109.47082 * 50.84605 * 18 17 16 33 33 H 1.09000 * 109.46598 * 170.84099 * 18 17 16 34 34 H 1.08997 * 109.88511 * 120.39826 * 23 17 16 35 35 H 1.08994 * 109.88544 * 241.58152 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7333 -6.0287 -0.0016 14 1 3.4087 -5.9602 0.8512 15 6 3.5312 -6.0676 -1.3315 16 6 3.9119 -7.5662 -1.4244 17 7 2.7353 -8.2882 -0.8952 18 6 3.1417 -9.5089 -0.1862 19 6 3.6857 -10.5256 -1.1918 20 9 4.7911 -9.9809 -1.8539 21 9 4.0732 -11.6879 -0.5165 22 9 2.6905 -10.8374 -2.1244 23 6 1.9907 -7.3815 -0.0021 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1568 -3.4353 -0.0009 28 1 2.9037 -5.7713 -2.1722 29 1 4.4211 -5.4411 -1.2714 30 1 4.7905 -7.7731 -0.8133 31 1 4.0950 -7.8477 -2.4614 32 1 3.9170 -9.2660 0.5404 33 1 2.2803 -9.9332 0.3297 34 1 0.9749 -7.2468 -0.3736 35 1 1.9673 -7.7920 1.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352086939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:35 Heat of formation + Delta-G solvation = -194.436247 kcal Electronic energy + Delta-G solvation = -21970.360183 eV Core-core repulsion = 17973.883229 eV Total energy + Delta-G solvation = -3996.476954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.26812 -47.83778 -47.68709 -39.92802 -37.96430 -34.26531 -33.14622 -32.26312 -29.26510 -28.59925 -27.03188 -23.66546 -23.05443 -21.70825 -21.21277 -19.50294 -18.74563 -18.62001 -17.83641 -17.34228 -16.00190 -15.95185 -15.18337 -14.94683 -14.65162 -14.61870 -14.36857 -14.30690 -14.18439 -14.02042 -13.88530 -13.83611 -13.26675 -12.82715 -12.79484 -12.16210 -12.04611 -11.92204 -11.61666 -11.46997 -11.29058 -10.98843 -10.92945 -10.83625 -10.34436 -9.45394 -9.14308 -8.77831 -8.73706 -7.94828 -6.19999 -4.27477 2.48533 3.22596 3.24766 3.27441 3.28604 3.29708 3.59490 3.80672 3.97754 4.17170 4.32168 4.43943 4.56997 4.76946 4.92328 4.97139 5.11790 5.16108 5.27402 5.37864 5.53752 5.75369 5.78404 6.01144 6.17528 6.50216 6.51660 7.25384 7.36680 7.46981 7.61271 7.93027 8.55782 8.72534 9.02208 9.39241 10.90121 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.049182 B = 0.003008 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.181931 B = 9305.141583 C = 9600.101872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.509 3.491 12 O -0.552 6.552 13 C -0.134 4.134 14 H 0.098 0.902 15 C -0.117 4.117 16 C 0.035 3.965 17 N -0.523 5.523 18 C 0.003 3.997 19 C 0.458 3.542 20 F -0.184 7.184 21 F -0.187 7.187 22 F -0.173 7.173 23 C 0.060 3.940 24 H 0.267 0.733 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.390 0.610 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.527 -18.949 -0.394 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.293 3.707 12 O -0.432 6.432 13 C -0.156 4.156 14 H 0.116 0.884 15 C -0.155 4.155 16 C -0.092 4.092 17 N -0.247 5.247 18 C -0.127 4.127 19 C 0.403 3.597 20 F -0.165 7.165 21 F -0.168 7.168 22 F -0.154 7.154 23 C -0.067 4.067 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.223 0.777 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.168 -19.121 -0.822 21.221 hybrid contribution 1.553 1.075 0.577 1.975 sum 10.721 -18.046 -0.245 20.991 Atomic orbital electron populations 1.69956 1.06121 1.27490 1.48667 1.24950 0.94913 0.99461 0.94638 0.86472 0.79425 0.82301 0.78697 1.20031 1.21042 1.20074 1.21178 0.93208 0.90464 1.53522 0.91962 1.19119 0.88291 0.81929 0.97784 1.46448 1.11136 1.06071 1.71965 1.20031 0.89008 0.84180 0.77506 1.90656 1.16750 1.84652 1.51100 1.22528 0.97936 0.95181 0.99994 0.88402 1.22712 1.00242 0.95729 0.96809 1.23354 0.91208 0.93142 1.01522 1.63622 1.21991 1.04921 1.34196 1.23468 1.03427 0.92212 0.93625 1.20469 0.75887 0.81371 0.81991 1.93172 1.55331 1.85375 1.82664 1.93180 1.91549 1.52020 1.80081 1.93213 1.61006 1.93497 1.67719 1.22791 0.99703 0.88865 0.95323 0.92333 0.95457 0.95523 0.77710 0.89619 0.89644 0.92641 0.89159 0.90045 0.86174 0.87170 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 10 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 11 C 0.51 9.54 7.13 -10.99 -0.08 9.46 16 12 O -0.55 -12.68 15.42 5.56 0.09 -12.59 16 13 C -0.13 -1.73 3.33 -89.95 -0.30 -2.03 16 14 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.31 6.51 -24.60 -0.16 -1.47 16 16 C 0.03 0.35 5.08 -2.30 -0.01 0.34 16 17 N -0.52 -5.67 5.09 -231.26 -1.18 -6.85 16 18 C 0.00 0.02 4.69 -3.83 -0.02 0.01 16 19 C 0.46 4.34 3.26 37.16 0.12 4.46 16 20 F -0.18 -1.85 14.70 2.25 0.03 -1.82 16 21 F -0.19 -1.75 17.32 2.25 0.04 -1.71 16 22 F -0.17 -1.96 17.24 2.25 0.04 -1.92 16 23 C 0.06 0.73 6.29 -2.84 -0.02 0.71 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 28 H 0.09 1.11 8.04 -51.93 -0.42 0.70 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.47 7.36 -51.93 -0.38 0.09 16 31 H 0.09 0.91 7.52 -51.93 -0.39 0.52 16 32 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 33 H 0.12 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.11 1.67 6.80 -51.93 -0.35 1.32 16 35 H 0.06 0.65 7.55 -51.93 -0.39 0.25 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -31.30 305.86 -6.23 -37.53 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.32 Total: 2.12 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.91 Total: 4.74 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.78 Total: -46.47 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.30 -6.23 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352086939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.905 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds