Wall clock time and date at job start Tue Mar 31 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47081 * 240.00399 * 3 2 1 5 5 H 1.48498 * 109.46704 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46931 * 120.00408 * 3 2 1 7 7 C 1.37877 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99628 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00027 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99922 * 179.97438 * 11 10 9 14 14 H 1.09003 * 110.76658 * 56.80101 * 13 11 10 15 15 C 1.55139 * 110.70883 * 293.59658 * 13 11 10 16 16 C 1.54904 * 101.65629 * 205.96436 * 15 13 11 17 17 N 1.47843 * 104.79405 * 37.06983 * 16 15 13 18 18 C 1.46900 * 110.99888 * 213.63369 * 17 16 15 19 19 C 1.52997 * 109.47463 * 290.84466 * 18 17 16 20 20 F 1.39899 * 109.46784 * 59.99839 * 19 18 17 21 21 F 1.39894 * 109.47145 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.46939 * 299.99990 * 19 18 17 23 23 C 1.47446 * 108.56761 * 335.90448 * 17 16 15 24 24 H 0.96997 * 120.00597 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47178 * 60.00859 * 9 7 2 26 26 H 1.08995 * 109.47333 * 300.00287 * 9 7 2 27 27 H 0.97003 * 120.00023 * 359.97438 * 10 9 7 28 28 H 1.09005 * 110.98834 * 324.05979 * 15 13 11 29 29 H 1.09000 * 110.99151 * 87.83417 * 15 13 11 30 30 H 1.08998 * 110.37178 * 278.24131 * 16 15 13 31 31 H 1.09003 * 110.37142 * 155.89745 * 16 15 13 32 32 H 1.08998 * 109.47082 * 50.84605 * 18 17 16 33 33 H 1.09000 * 109.46598 * 170.84099 * 18 17 16 34 34 H 1.08997 * 109.88511 * 120.39826 * 23 17 16 35 35 H 1.08994 * 109.88544 * 241.58152 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7333 -6.0287 -0.0016 14 1 3.4087 -5.9602 0.8512 15 6 3.5312 -6.0676 -1.3315 16 6 3.9119 -7.5662 -1.4244 17 7 2.7353 -8.2882 -0.8952 18 6 3.1417 -9.5089 -0.1862 19 6 3.6857 -10.5256 -1.1918 20 9 4.7911 -9.9809 -1.8539 21 9 4.0732 -11.6879 -0.5165 22 9 2.6905 -10.8374 -2.1244 23 6 1.9907 -7.3815 -0.0021 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1568 -3.4353 -0.0009 28 1 2.9037 -5.7713 -2.1722 29 1 4.4211 -5.4411 -1.2714 30 1 4.7905 -7.7731 -0.8133 31 1 4.0950 -7.8477 -2.4614 32 1 3.9170 -9.2660 0.5404 33 1 2.2803 -9.9332 0.3297 34 1 0.9749 -7.2468 -0.3736 35 1 1.9673 -7.7920 1.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352086939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:34 Heat of formation + Delta-G solvation = -218.003591 kcal Electronic energy + Delta-G solvation = -21971.382140 eV Core-core repulsion = 17973.883229 eV Total energy + Delta-G solvation = -3997.498911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.01697 -48.56868 -48.47797 -41.16989 -39.22426 -36.15871 -34.48423 -33.81583 -30.29116 -29.72654 -28.64408 -25.16394 -24.09289 -23.04941 -22.13574 -21.00701 -19.51773 -19.37094 -19.02164 -18.53209 -17.69483 -17.12285 -16.71792 -16.21290 -15.98215 -15.51436 -15.50026 -15.34112 -15.02431 -14.94150 -14.71082 -14.65763 -14.56145 -14.14109 -13.96514 -13.82767 -13.53285 -12.97873 -12.93508 -12.72122 -12.64920 -12.31420 -12.26306 -12.11564 -11.81852 -11.50555 -10.79233 -10.72214 -9.83732 -9.54556 -8.28911 -6.45756 1.43710 1.47524 1.55741 1.73725 1.76337 2.30497 2.46513 2.66128 2.90818 3.06055 3.12035 3.33501 3.57817 3.61786 3.93837 4.13742 4.26307 4.28857 4.30521 4.36766 4.57844 4.88329 4.95417 5.07202 5.10743 5.18482 5.24386 5.48564 5.65045 5.69949 5.76624 5.85148 6.65330 6.89944 7.23672 7.48659 8.83045 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.049182 B = 0.003008 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.181931 B = 9305.141583 C = 9600.101872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.704 5.704 11 C 0.505 3.495 12 O -0.601 6.601 13 C -0.120 4.120 14 H 0.135 0.865 15 C -0.114 4.114 16 C 0.040 3.960 17 N -0.540 5.540 18 C 0.005 3.995 19 C 0.457 3.543 20 F -0.187 7.187 21 F -0.185 7.185 22 F -0.188 7.188 23 C 0.065 3.935 24 H 0.269 0.731 25 H -0.015 1.015 26 H -0.012 1.012 27 H 0.409 0.591 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.072 0.928 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.644 -19.245 0.304 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.353 5.353 11 C 0.292 3.708 12 O -0.483 6.483 13 C -0.142 4.142 14 H 0.153 0.847 15 C -0.152 4.152 16 C -0.086 4.086 17 N -0.265 5.265 18 C -0.125 4.125 19 C 0.403 3.597 20 F -0.169 7.169 21 F -0.167 7.167 22 F -0.170 7.170 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.006 0.994 27 H 0.244 0.756 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.341 -19.455 -0.129 23.039 hybrid contribution 0.537 1.067 0.332 1.240 sum 12.878 -18.388 0.204 22.450 Atomic orbital electron populations 1.70127 1.08310 1.28637 1.49944 1.26066 0.95745 1.03929 0.93862 0.85218 0.77913 0.76624 0.79538 1.18641 1.21258 1.18560 1.21597 0.94341 0.90566 1.52937 0.89696 1.18532 0.88730 0.84422 0.94025 1.46169 1.11155 1.05473 1.72471 1.21108 0.89472 0.84871 0.75332 1.90638 1.19519 1.85375 1.52736 1.22521 0.96894 0.92360 1.02458 0.84728 1.22736 1.00386 0.97450 0.94639 1.23354 0.91642 0.91667 1.01971 1.63454 1.22879 1.05506 1.34656 1.23572 1.04928 0.90609 0.93367 1.20657 0.75525 0.81654 0.81870 1.93165 1.55472 1.85383 1.82839 1.93183 1.91506 1.52069 1.79944 1.93187 1.61667 1.93661 1.68436 1.22607 0.97967 0.89020 0.96599 0.92260 0.99656 0.99438 0.75551 0.92221 0.87118 0.90067 0.89440 0.87222 0.84859 0.90963 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.98 41.61 29.54 68.60 2.03 43.63 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.56 -29.70 9.28 25.60 0.24 -29.46 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.35 5.43 85.63 0.46 14.81 16 10 N -0.70 -28.39 5.55 -466.80 -2.59 -30.98 16 11 C 0.51 19.09 7.13 87.66 0.63 19.72 16 12 O -0.60 -28.89 15.42 -3.01 -0.05 -28.94 16 13 C -0.12 -2.85 3.33 -10.36 -0.03 -2.89 16 14 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -2.29 6.51 31.98 0.21 -2.08 16 16 C 0.04 0.68 5.08 86.77 0.44 1.13 16 17 N -0.54 -10.52 5.09 -885.57 -4.50 -15.02 16 18 C 0.00 0.07 4.69 86.30 0.40 0.47 16 19 C 0.46 7.64 3.26 71.98 0.23 7.87 16 20 F -0.19 -3.30 14.70 44.97 0.66 -2.64 16 21 F -0.19 -3.06 17.32 44.97 0.78 -2.28 16 22 F -0.19 -4.04 17.24 44.97 0.78 -3.27 16 23 C 0.07 1.50 6.29 86.64 0.55 2.04 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.41 13.32 8.32 -92.71 -0.77 12.55 16 28 H 0.06 1.52 8.04 -2.38 -0.02 1.50 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.00 7.36 -2.39 -0.02 0.98 16 31 H 0.09 1.57 7.52 -2.39 -0.02 1.55 16 32 H 0.11 0.92 7.85 -2.39 -0.02 0.90 16 33 H 0.13 1.46 8.03 -2.39 -0.02 1.44 16 34 H 0.07 2.24 6.80 -2.39 -0.02 2.23 16 35 H 0.09 1.55 7.55 -2.39 -0.02 1.53 16 Total: -1.00 -71.72 305.86 1.33 -70.39 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.35 Total: 12.41 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 3.59 Total: 12.27 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.81 Total: -101.58 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 9 Polarization: -10.40 SS G_CDS: 2.21 Total: -8.18 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.72 1.33 -70.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352086939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.613 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds