Wall clock time and date at job start Tue Mar 31 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46957 * 300.00441 * 3 2 1 6 6 H 1.48493 * 109.47349 * 60.00425 * 3 2 1 7 7 C 1.37884 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47297 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47576 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00216 * 179.97438 * 11 10 9 13 13 O 1.21583 * 120.00223 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99837 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00131 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.46859 * 325.00066 * 15 14 12 17 17 C 1.52989 * 109.47178 * 204.99878 * 15 14 12 18 18 C 1.53000 * 117.50008 * 248.61886 * 17 15 14 19 19 C 1.52997 * 60.00347 * 252.51154 * 18 17 15 20 20 C 1.53001 * 109.47319 * 84.99284 * 15 14 12 21 21 F 1.39896 * 109.47233 * 180.02562 * 20 15 14 22 22 F 1.39898 * 109.47445 * 300.00697 * 20 15 14 23 23 F 1.39904 * 109.46825 * 60.00248 * 20 15 14 24 24 H 0.96994 * 119.99985 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46678 * 60.00483 * 9 7 2 26 26 H 1.09001 * 109.47643 * 300.00701 * 9 7 2 27 27 H 1.08999 * 109.47304 * 59.99880 * 10 9 7 28 28 H 1.09003 * 109.46858 * 300.00172 * 10 9 7 29 29 H 0.97001 * 119.99220 * 0.02562 * 11 10 9 30 30 H 0.97003 * 120.00327 * 359.97438 * 14 12 11 31 31 H 1.09004 * 115.56709 * 34.30620 * 17 15 14 32 32 H 1.09002 * 117.49696 * 0.02562 * 18 17 15 33 33 H 1.09002 * 117.50343 * 145.02258 * 18 17 15 34 34 H 1.08999 * 117.49685 * 252.51237 * 19 18 17 35 35 H 1.08999 * 117.52022 * 107.47599 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5128 -4.9309 -0.0012 12 6 2.1867 -6.0981 -0.0018 13 8 3.4025 -6.0981 -0.0014 14 7 1.5128 -7.2653 -0.0029 15 6 2.2452 -8.5340 -0.0030 16 1 3.1564 -8.4275 -0.5917 17 6 1.3685 -9.6290 -0.6137 18 6 0.8629 -10.7315 0.3189 19 6 1.9583 -11.0379 -0.7043 20 6 2.6082 -8.9136 1.4341 21 9 3.3081 -10.1248 1.4339 22 9 3.4099 -7.9123 1.9926 23 9 1.4388 -9.0503 2.1898 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5572 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.5428 -4.9308 -0.0019 30 1 0.5427 -7.2653 -0.0028 31 1 0.7068 -9.3077 -1.4182 32 1 1.1546 -10.6764 1.3677 33 1 -0.1313 -11.1355 0.1280 34 1 1.6847 -11.6434 -1.5684 35 1 2.9712 -11.1845 -0.3292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355059780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:58 Heat of formation + Delta-G solvation = -157.722569 kcal Electronic energy + Delta-G solvation = -22389.754147 eV Core-core repulsion = 18394.869217 eV Total energy + Delta-G solvation = -3994.884930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.30995 -47.74625 -47.61359 -39.91392 -37.98931 -35.06664 -34.28356 -32.85467 -30.09314 -28.45385 -24.94795 -24.17470 -22.85203 -21.29646 -21.12892 -20.67166 -18.93351 -18.67661 -18.09819 -17.57179 -16.40781 -16.08593 -15.37269 -15.03365 -14.79422 -14.58974 -14.54759 -14.43149 -14.06747 -14.05078 -13.74578 -13.72799 -13.29330 -13.23998 -12.63728 -12.29174 -11.71691 -11.59458 -11.20423 -11.06538 -10.88932 -10.67475 -10.62295 -10.36356 -10.07505 -9.60352 -9.42649 -9.26887 -8.54635 -8.34929 -6.10418 -4.12993 2.40819 2.68163 3.28317 3.32642 3.36060 3.39671 3.41539 3.70076 3.81362 4.09059 4.28062 4.40906 4.44086 4.53758 4.63784 4.96166 5.14116 5.26994 5.32598 5.48177 5.68316 5.75335 6.14958 6.21756 6.35924 6.73583 6.88894 7.01337 7.53413 7.60734 7.88577 8.17948 8.30431 8.79119 8.93553 9.51952 11.01297 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.003284 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.827209 B = 8524.509723 C = 8733.838687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.139 3.861 11 N -0.731 5.731 12 C 0.697 3.303 13 O -0.582 6.582 14 N -0.741 5.741 15 C 0.163 3.837 16 H 0.133 0.867 17 C -0.174 4.174 18 C -0.192 4.192 19 C -0.169 4.169 20 C 0.432 3.568 21 F -0.182 7.182 22 F -0.166 7.166 23 F -0.178 7.178 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.395 0.605 30 H 0.405 0.595 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -22.643 -0.487 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.384 5.384 12 C 0.397 3.603 13 O -0.459 6.459 14 N -0.398 5.398 15 C 0.054 3.946 16 H 0.150 0.850 17 C -0.192 4.192 18 C -0.229 4.229 19 C -0.206 4.206 20 C 0.376 3.624 21 F -0.164 7.164 22 F -0.147 7.147 23 F -0.160 7.160 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.240 0.760 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.614 -22.431 -0.458 22.445 hybrid contribution -0.563 0.888 0.278 1.087 sum 0.051 -21.544 -0.179 21.544 Atomic orbital electron populations 1.69963 1.06096 1.26779 1.50489 1.25000 0.94898 0.99441 0.94984 0.86449 0.80195 0.83287 0.77601 1.19542 1.20949 1.20940 1.21082 0.93326 0.90292 1.51203 0.92124 1.19337 0.94253 0.91049 0.97877 1.21664 0.95702 0.80078 1.00891 1.45523 1.10022 1.05084 1.77821 1.16079 0.85745 0.80418 0.78029 1.90936 1.11370 1.86271 1.57360 1.44977 1.09916 1.03193 1.81690 1.21264 0.99198 0.84586 0.89586 0.84965 1.22402 1.03699 0.89202 1.03917 1.23689 0.99959 1.01206 0.98051 1.23237 0.99808 0.95654 1.01891 1.21392 0.74822 0.74680 0.91531 1.93121 1.79981 1.46414 1.96879 1.93286 1.73891 1.60404 1.87122 1.93084 1.48577 1.95059 1.79272 0.92902 0.95912 0.95908 0.92533 0.92550 0.77160 0.75969 0.85143 0.86966 0.87938 0.87925 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.14 2.94 5.61 -4.04 -0.02 2.91 16 11 N -0.73 -12.51 5.56 -65.23 -0.36 -12.87 16 12 C 0.70 11.69 8.10 -86.92 -0.70 10.99 16 13 O -0.58 -11.96 14.92 5.29 0.08 -11.88 16 14 N -0.74 -8.87 5.00 -58.68 -0.29 -9.17 16 15 C 0.16 1.78 2.51 -67.93 -0.17 1.61 16 16 H 0.13 1.57 7.58 -51.93 -0.39 1.17 16 17 C -0.17 -1.35 5.85 -90.62 -0.53 -1.88 16 18 C -0.19 -1.42 9.04 -26.73 -0.24 -1.67 16 19 C -0.17 -1.17 9.72 -26.73 -0.26 -1.43 16 20 C 0.43 5.32 2.49 37.16 0.09 5.41 16 21 F -0.18 -2.03 13.63 2.25 0.03 -2.00 16 22 F -0.17 -2.66 15.68 2.25 0.04 -2.62 16 23 F -0.18 -2.11 14.36 2.25 0.03 -2.08 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.72 8.49 -40.82 -0.35 5.37 16 30 H 0.41 3.70 8.62 -40.82 -0.35 3.34 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.98 4.51 -51.93 -0.23 0.75 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.81 6.36 -51.93 -0.33 0.48 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -31.85 304.86 -6.71 -38.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.16 Total: 3.42 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.39 Total: 2.99 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.08 Total: -47.27 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.10 Total: -6.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.85 -6.71 -38.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355059780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.156 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds