Wall clock time and date at job start Tue Mar 31 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47450 * 239.99874 * 3 2 1 5 5 H 1.48501 * 109.47565 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47333 * 120.00069 * 3 2 1 7 7 C 1.37873 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47234 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99718 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00324 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00218 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00413 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61922 * 155.00287 * 15 14 12 17 17 C 1.53778 * 87.08479 * 89.11495 * 16 15 14 18 18 C 1.52997 * 113.61679 * 139.98340 * 17 16 15 19 19 F 1.39905 * 109.47157 * 61.52895 * 18 17 16 20 20 F 1.39900 * 109.47010 * 301.53286 * 18 17 16 21 21 F 1.39897 * 109.47422 * 181.52978 * 18 17 16 22 22 C 1.53783 * 87.17189 * 25.39160 * 17 16 15 23 23 H 0.96997 * 120.00255 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47606 * 59.99919 * 9 7 2 25 25 H 1.08999 * 109.47497 * 299.99501 * 9 7 2 26 26 H 1.09000 * 109.46969 * 59.99432 * 10 9 7 27 27 H 1.09003 * 109.46507 * 299.99588 * 10 9 7 28 28 H 0.96999 * 120.00583 * 359.97438 * 11 10 9 29 29 H 0.97006 * 119.99722 * 359.97438 * 14 12 11 30 30 H 1.08998 * 112.90893 * 23.74734 * 15 14 12 31 31 H 1.09006 * 113.61080 * 334.56445 * 16 15 14 32 32 H 1.08997 * 113.61849 * 203.66936 * 16 15 14 33 33 H 1.09007 * 113.61285 * 270.80692 * 17 16 15 34 34 H 1.09000 * 113.61048 * 89.16040 * 22 17 16 35 35 H 1.09003 * 113.61260 * 220.06009 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1866 -6.0980 -0.0024 13 8 3.4025 -6.0980 -0.0019 14 7 1.5128 -7.2652 -0.0023 15 6 2.2453 -8.5339 -0.0022 16 6 1.4474 -9.7059 0.5932 17 6 0.9077 -9.9563 -0.8248 18 6 0.8069 -11.4388 -1.1894 19 9 -0.0828 -12.0742 -0.3164 20 9 2.0692 -12.0323 -1.0821 21 9 0.3420 -11.5656 -2.5027 22 6 2.1851 -9.2787 -1.3483 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 0.5428 -4.9308 -0.0020 29 1 0.5427 -7.2652 -0.0016 30 1 3.2533 -8.4419 0.4021 31 1 0.6809 -9.3960 1.3037 32 1 2.0741 -10.5137 0.9709 33 1 -0.0038 -9.4022 -1.0493 34 1 3.0139 -9.9696 -1.5026 35 1 2.0133 -8.6244 -2.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355078425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:58 Heat of formation + Delta-G solvation = -177.711915 kcal Electronic energy + Delta-G solvation = -21425.412688 eV Core-core repulsion = 17429.660955 eV Total energy + Delta-G solvation = -3995.751733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.38561 -47.89581 -47.86257 -40.34531 -38.57370 -34.85991 -33.40066 -32.69959 -29.60750 -28.02016 -26.26744 -24.80873 -23.31150 -21.42793 -20.75868 -19.90093 -18.85966 -18.65036 -18.30142 -17.60631 -16.45003 -16.15631 -15.25267 -15.11638 -14.79064 -14.56411 -14.54979 -14.31334 -14.11903 -14.04870 -14.01320 -13.79044 -13.47722 -13.24017 -12.92863 -12.67329 -12.29067 -11.62712 -11.22115 -11.18191 -11.01988 -10.87316 -10.66246 -10.34117 -10.02381 -9.58965 -9.30160 -9.16498 -8.51899 -8.31764 -6.10779 -4.13638 2.45501 2.85350 3.30552 3.34436 3.36495 3.37968 3.47472 3.48904 3.65406 4.09839 4.33828 4.36305 4.44016 4.52203 4.64997 5.15191 5.20432 5.26383 5.37586 5.43578 5.58333 5.69644 6.24984 6.36241 6.50826 6.74160 6.93140 7.13471 7.53531 7.60554 7.88042 8.22310 8.35559 8.87877 8.93638 9.51267 11.00857 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.002580 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.520804 B =10848.474889 C =11061.047375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.737 5.737 12 C 0.701 3.299 13 O -0.594 6.594 14 N -0.737 5.737 15 C 0.151 3.849 16 C -0.134 4.134 17 C -0.168 4.168 18 C 0.459 3.541 19 F -0.185 7.185 20 F -0.182 7.182 21 F -0.185 7.185 22 C -0.144 4.144 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.394 0.606 29 H 0.395 0.605 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -23.220 -0.916 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.400 3.600 13 O -0.473 6.473 14 N -0.393 5.393 15 C 0.044 3.956 16 C -0.172 4.172 17 C -0.187 4.187 18 C 0.405 3.595 19 F -0.166 7.166 20 F -0.163 7.163 21 F -0.166 7.166 22 C -0.183 4.183 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.227 0.773 29 H 0.229 0.771 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.341 -23.067 -0.918 23.088 hybrid contribution -0.743 0.582 -0.171 0.959 sum -1.083 -22.484 -1.090 22.537 Atomic orbital electron populations 1.69943 1.06099 1.27008 1.50325 1.24991 0.94898 0.99416 0.94963 0.86563 0.79509 0.82604 0.78804 1.20090 1.21256 1.20095 1.21013 0.93254 0.90365 1.51457 0.92245 1.19321 0.94236 0.91057 0.97803 1.21620 0.95663 0.80301 1.00735 1.45548 1.09909 1.05301 1.78232 1.16038 0.85657 0.80418 0.77842 1.90900 1.11697 1.86519 1.58135 1.44826 1.09138 1.04031 1.81292 1.21433 0.97500 0.81701 0.94972 1.23396 1.00602 0.99223 0.93998 1.24147 1.03636 0.89466 1.01495 1.20479 0.73378 0.91223 0.74400 1.93185 1.69121 1.84694 1.69604 1.93159 1.41229 1.86148 1.95784 1.93189 1.88796 1.96851 1.37767 1.23624 0.95109 0.99545 0.99988 0.92782 0.95977 0.95975 0.92691 0.92696 0.77333 0.77112 0.86762 0.89104 0.87587 0.84986 0.87743 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.91 5.61 -4.04 -0.02 2.89 16 11 N -0.74 -12.31 5.56 -65.22 -0.36 -12.67 16 12 C 0.70 11.38 8.57 -86.92 -0.74 10.63 16 13 O -0.59 -12.11 15.94 5.29 0.08 -12.02 16 14 N -0.74 -8.06 5.26 -57.79 -0.30 -8.36 16 15 C 0.15 1.41 4.33 -67.03 -0.29 1.12 16 16 C -0.13 -0.88 7.20 -25.92 -0.19 -1.06 16 17 C -0.17 -1.14 3.67 -89.81 -0.33 -1.47 16 18 C 0.46 3.75 3.01 37.16 0.11 3.87 16 19 F -0.18 -1.63 17.20 2.25 0.04 -1.59 16 20 F -0.18 -1.60 15.74 2.25 0.04 -1.56 16 21 F -0.18 -1.73 17.32 2.25 0.04 -1.69 16 22 C -0.14 -1.16 7.33 -25.82 -0.19 -1.35 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.39 5.56 8.49 -40.82 -0.35 5.21 16 29 H 0.40 3.18 8.72 -40.82 -0.36 2.83 16 30 H 0.11 1.27 7.46 -51.93 -0.39 0.89 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.63 7.83 -51.93 -0.41 0.22 16 33 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.79 7.18 -51.93 -0.37 0.42 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -31.94 313.27 -6.61 -38.54 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.37 Total: 1.89 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.20 Total: 1.71 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.07 Total: -46.19 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.94 -6.61 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355078425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.169 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds