Wall clock time and date at job start Tue Mar 31 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47450 * 239.99874 * 3 2 1 5 5 H 1.48501 * 109.47565 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47333 * 120.00069 * 3 2 1 7 7 C 1.37873 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47234 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99718 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00324 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00218 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00413 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61922 * 155.00287 * 15 14 12 17 17 C 1.53778 * 87.08479 * 89.11495 * 16 15 14 18 18 C 1.52997 * 113.61679 * 139.98340 * 17 16 15 19 19 F 1.39905 * 109.47157 * 61.52895 * 18 17 16 20 20 F 1.39900 * 109.47010 * 301.53286 * 18 17 16 21 21 F 1.39897 * 109.47422 * 181.52978 * 18 17 16 22 22 C 1.53783 * 87.17189 * 25.39160 * 17 16 15 23 23 H 0.96997 * 120.00255 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47606 * 59.99919 * 9 7 2 25 25 H 1.08999 * 109.47497 * 299.99501 * 9 7 2 26 26 H 1.09000 * 109.46969 * 59.99432 * 10 9 7 27 27 H 1.09003 * 109.46507 * 299.99588 * 10 9 7 28 28 H 0.96999 * 120.00583 * 359.97438 * 11 10 9 29 29 H 0.97006 * 119.99722 * 359.97438 * 14 12 11 30 30 H 1.08998 * 112.90893 * 23.74734 * 15 14 12 31 31 H 1.09006 * 113.61080 * 334.56445 * 16 15 14 32 32 H 1.08997 * 113.61849 * 203.66936 * 16 15 14 33 33 H 1.09007 * 113.61285 * 270.80692 * 17 16 15 34 34 H 1.09000 * 113.61048 * 89.16040 * 22 17 16 35 35 H 1.09003 * 113.61260 * 220.06009 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1866 -6.0980 -0.0024 13 8 3.4025 -6.0980 -0.0019 14 7 1.5128 -7.2652 -0.0023 15 6 2.2453 -8.5339 -0.0022 16 6 1.4474 -9.7059 0.5932 17 6 0.9077 -9.9563 -0.8248 18 6 0.8069 -11.4388 -1.1894 19 9 -0.0828 -12.0742 -0.3164 20 9 2.0692 -12.0323 -1.0821 21 9 0.3420 -11.5656 -2.5027 22 6 2.1851 -9.2787 -1.3483 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 0.5428 -4.9308 -0.0020 29 1 0.5427 -7.2652 -0.0016 30 1 3.2533 -8.4419 0.4021 31 1 0.6809 -9.3960 1.3037 32 1 2.0741 -10.5137 0.9709 33 1 -0.0038 -9.4022 -1.0493 34 1 3.0139 -9.9696 -1.5026 35 1 2.0133 -8.6244 -2.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355078425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:58 Heat of formation + Delta-G solvation = -199.318692 kcal Electronic energy + Delta-G solvation = -21426.349628 eV Core-core repulsion = 17429.660955 eV Total energy + Delta-G solvation = -3996.688673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.05277 -48.56927 -48.53877 -41.37112 -39.60806 -36.53611 -34.87636 -34.26058 -31.34466 -28.84859 -26.87741 -26.64691 -24.14095 -23.01288 -22.18019 -20.69819 -19.76407 -19.31754 -19.22055 -18.56667 -18.28196 -17.18590 -16.60597 -16.48665 -16.10367 -15.47934 -15.40245 -15.27215 -15.11164 -14.98268 -14.77270 -14.72464 -14.71056 -14.31489 -14.09914 -13.59189 -13.51500 -13.19767 -12.90825 -12.52553 -12.24764 -12.21756 -11.82820 -11.68992 -11.52833 -11.48985 -11.19944 -10.58518 -10.31551 -9.73271 -8.22659 -6.32701 1.43300 1.45422 1.53114 1.71243 1.83410 2.15034 2.42569 2.79168 2.85071 3.02710 3.12377 3.34479 3.47854 3.67853 3.77349 4.03139 4.47997 4.53083 4.55102 4.64026 4.71481 4.82182 4.89619 4.93444 4.99866 5.33587 5.53143 5.59714 5.62143 5.80889 6.06128 6.19145 6.80678 7.14574 7.36685 7.61608 8.89000 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.002580 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.520804 B =10848.474889 C =11061.047375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.732 5.732 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.715 5.715 15 C 0.138 3.862 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.459 3.541 19 F -0.187 7.187 20 F -0.186 7.186 21 F -0.192 7.192 22 C -0.141 4.141 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.408 0.592 29 H 0.413 0.587 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 -23.839 -0.740 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.400 3.600 13 O -0.519 6.519 14 N -0.371 5.371 15 C 0.031 3.969 16 C -0.156 4.156 17 C -0.177 4.177 18 C 0.406 3.594 19 F -0.169 7.169 20 F -0.168 7.168 21 F -0.174 7.174 22 C -0.180 4.180 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.243 0.757 29 H 0.250 0.750 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.168 0.832 34 H 0.127 0.873 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.745 -23.742 -0.743 23.765 hybrid contribution -0.641 0.684 -0.235 0.967 sum -1.386 -23.058 -0.978 23.120 Atomic orbital electron populations 1.70045 1.07501 1.28040 1.51030 1.25847 0.95782 1.03022 0.94447 0.85522 0.78322 0.78230 0.79126 1.19373 1.20650 1.19357 1.21457 0.93640 0.91987 1.51525 0.92285 1.19121 0.94233 0.91603 0.96377 1.21066 0.94592 0.81128 0.99621 1.45205 1.10448 1.04398 1.78628 1.16131 0.85133 0.81244 0.77455 1.90874 1.13773 1.87231 1.60031 1.44594 1.10003 1.02933 1.79556 1.21590 0.97113 0.81582 0.96597 1.23350 1.00441 0.97676 0.94146 1.24157 1.03703 0.88522 1.01269 1.20642 0.73069 0.91726 0.74012 1.93182 1.69213 1.84843 1.69616 1.93153 1.41523 1.86342 1.95768 1.93176 1.88885 1.96919 1.38404 1.23582 0.96199 0.99383 0.98866 0.92557 0.97276 0.97251 0.93808 0.93850 0.75675 0.75003 0.88716 0.87511 0.86609 0.83171 0.87313 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.72 13.29 21.45 0.28 -53.44 16 2 C 0.01 0.43 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.25 9.11 25.60 0.23 -30.02 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C 0.16 6.76 5.61 86.38 0.48 7.24 16 11 N -0.73 -24.09 5.56 -478.52 -2.66 -26.75 16 12 C 0.70 22.28 8.57 179.06 1.53 23.81 16 13 O -0.64 -26.09 15.94 -4.00 -0.06 -26.15 16 14 N -0.71 -14.42 5.26 -455.01 -2.40 -16.81 16 15 C 0.14 2.36 4.33 45.58 0.20 2.56 16 16 C -0.12 -1.23 7.20 31.12 0.22 -1.01 16 17 C -0.16 -1.73 3.67 -10.27 -0.04 -1.77 16 18 C 0.46 6.57 3.01 71.98 0.22 6.79 16 19 F -0.19 -2.89 17.20 44.97 0.77 -2.12 16 20 F -0.19 -2.96 15.74 44.97 0.71 -2.25 16 21 F -0.19 -3.29 17.32 44.97 0.78 -2.51 16 22 C -0.14 -2.07 7.33 31.18 0.23 -1.84 16 23 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.41 11.07 8.49 -92.71 -0.79 10.29 16 29 H 0.41 5.55 8.72 -92.70 -0.81 4.74 16 30 H 0.09 2.07 7.46 -2.39 -0.02 2.05 16 31 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.12 1.06 7.83 -2.39 -0.02 1.04 16 33 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 1.52 7.18 -2.39 -0.02 1.50 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.47 313.27 2.69 -65.78 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.46 Total: 11.03 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 3.69 Total: 8.01 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -4.77 Total: -97.00 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.26 Total: -6.88 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.47 2.69 -65.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355078425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.538 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds