Wall clock time and date at job start Tue Mar 31 2020 01:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46786 * 181.57047 * 3 2 1 5 5 N 1.46497 * 109.47063 * 184.80789 * 4 3 2 6 6 C 1.46506 * 119.99959 * 96.02382 * 5 4 3 7 7 C 1.50701 * 109.47127 * 269.99850 * 6 5 4 8 8 H 1.08003 * 119.99572 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00039 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99975 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46986 * 89.99996 * 11 9 7 13 13 H 1.48501 * 109.47026 * 210.00251 * 11 9 7 14 14 H 1.48502 * 109.47182 * 330.00167 * 11 9 7 15 15 C 1.34773 * 119.99990 * 276.02155 * 5 4 3 16 16 O 1.21282 * 120.00121 * 175.49100 * 15 5 4 17 17 C 1.50700 * 119.99883 * 355.48889 * 15 5 4 18 18 H 1.08999 * 112.85136 * 18.01754 * 17 15 5 19 19 C 1.53780 * 113.61100 * 149.32722 * 17 15 5 20 20 C 1.53784 * 87.08343 * 89.11794 * 19 17 15 21 21 C 1.53778 * 87.07910 * 25.43052 * 20 19 17 22 22 H 1.08995 * 113.61394 * 89.12255 * 21 20 19 23 23 C 1.50702 * 113.61223 * 220.02279 * 21 20 19 24 24 O 1.20829 * 120.00240 * 94.40268 * 23 21 20 25 25 O 1.34228 * 119.99788 * 274.40585 * 23 21 20 26 26 H 1.08992 * 109.47444 * 61.57106 * 3 2 1 27 27 H 1.08999 * 109.47120 * 301.56644 * 3 2 1 28 28 H 1.09002 * 109.47116 * 64.80047 * 4 3 2 29 29 H 1.09004 * 109.46962 * 304.80539 * 4 3 2 30 30 H 1.08995 * 109.47021 * 150.00217 * 6 5 4 31 31 H 1.09001 * 109.47038 * 29.99801 * 6 5 4 32 32 H 0.97006 * 120.00220 * 179.97438 * 10 9 7 33 33 H 1.09006 * 113.61187 * 203.66370 * 19 17 15 34 34 H 1.08998 * 113.61654 * 334.56542 * 19 17 15 35 35 H 1.08995 * 113.60886 * 270.88245 * 20 19 17 36 36 H 1.08994 * 113.69303 * 139.99167 * 20 19 17 37 37 H 0.96703 * 117.00101 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4429 0.0395 5 7 4.5777 1.4485 -0.0761 6 6 5.2082 1.6538 -1.3825 7 6 5.4118 0.3216 -2.0570 8 1 5.1021 -0.5870 -1.5622 9 6 5.9925 0.2630 -3.3061 10 7 6.3692 1.3695 -3.9087 11 14 6.2455 -1.3884 -4.1418 12 1 5.0486 -1.7197 -4.9559 13 1 7.4395 -1.3199 -5.0222 14 1 6.4497 -2.4384 -3.1117 15 6 5.3411 1.2647 1.0192 16 8 6.5467 1.1874 0.9121 17 6 4.6967 1.1552 2.3771 18 1 3.6322 0.9270 2.3233 19 6 5.4722 0.2583 3.3564 20 6 6.2521 1.5178 3.7692 21 6 5.0284 2.3295 3.3129 22 1 4.2891 2.4839 4.0987 23 6 5.3842 3.5999 2.5845 24 8 5.4431 3.6082 1.3776 25 8 5.6357 4.7223 3.2764 26 1 2.9716 -0.4884 -0.9036 27 1 2.9716 -0.5371 0.8756 28 1 2.8256 1.9055 0.9824 29 1 2.6850 2.0037 -0.7893 30 1 6.1725 2.1438 -1.2475 31 1 4.5659 2.2801 -2.0016 32 1 6.7781 1.3282 -4.7874 33 1 4.8542 -0.1536 4.1542 34 1 6.0879 -0.4949 2.8647 35 1 7.1434 1.6961 3.1677 36 1 6.4444 1.5825 4.8401 37 1 5.8593 5.5123 2.7654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397110333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:34 Heat of formation + Delta-G solvation = -96.895102 kcal Electronic energy + Delta-G solvation = -22674.559504 eV Core-core repulsion = 19224.168991 eV Total energy + Delta-G solvation = -3450.390513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20581 -40.33357 -38.45433 -37.73290 -36.96001 -36.47428 -34.77315 -32.08777 -29.70804 -28.35031 -27.32950 -25.12706 -24.56997 -23.05516 -21.42788 -19.30243 -19.11192 -18.85618 -18.27731 -17.98556 -17.52088 -16.70516 -16.62608 -15.96479 -15.75005 -15.60994 -15.42131 -14.87127 -14.52810 -14.21763 -13.95838 -13.61329 -13.58844 -13.45588 -13.22920 -13.02756 -12.80854 -12.75102 -12.49662 -12.42887 -12.34937 -12.17842 -11.83273 -11.77351 -11.54506 -11.30917 -11.21712 -10.55668 -10.27341 -9.30863 -8.12845 -6.26649 1.27822 1.41543 1.44111 1.53765 1.71033 1.84764 1.97877 2.20063 2.37438 2.54051 3.15535 3.18103 3.44053 3.63372 3.80225 3.87160 4.02898 4.19701 4.31632 4.46828 4.51896 4.62140 4.79685 4.86150 4.90425 5.05092 5.11892 5.16530 5.18562 5.38754 5.52856 5.68548 5.71598 5.97133 6.16984 6.61244 6.83157 6.98187 7.04740 7.40299 7.72885 8.94219 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.006588 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.429114 B = 4248.980199 C = 5199.539379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.248 3.752 3 C -0.043 4.043 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.275 3.725 7 C -0.529 4.529 8 H 0.070 0.930 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.265 1.265 15 C 0.539 3.461 16 O -0.592 6.592 17 C -0.134 4.134 18 H 0.137 0.863 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.084 4.084 22 H 0.181 0.819 23 C 0.469 3.531 24 O -0.533 6.533 25 O -0.510 6.510 26 H 0.113 0.887 27 H 0.139 0.861 28 H 0.104 0.896 29 H 0.074 0.926 30 H -0.013 1.013 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 0.362 19.037 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.069 4.069 3 C -0.084 4.084 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.153 3.847 7 C -0.567 4.567 8 H 0.088 0.912 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.216 1.216 14 H -0.189 1.189 15 C 0.329 3.671 16 O -0.473 6.473 17 C -0.156 4.156 18 H 0.155 0.845 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.103 4.103 22 H 0.198 0.802 23 C 0.312 3.688 24 O -0.422 6.422 25 O -0.323 6.323 26 H 0.131 0.869 27 H 0.157 0.843 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.005 0.995 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -6.857 0.071 18.701 19.918 hybrid contribution 1.208 0.356 -1.855 2.242 sum -5.649 0.426 16.846 17.773 Atomic orbital electron populations 1.81219 1.14119 1.10091 1.11132 1.29132 0.94850 0.91698 0.91260 1.19953 0.80200 1.00275 1.07958 1.21410 0.79927 0.94872 1.04191 1.47773 1.06030 1.70187 1.08151 1.18554 0.91647 0.95308 0.79194 1.21830 1.39479 0.93838 1.01578 0.91234 1.25873 0.95221 1.00158 0.98289 1.70092 1.42635 1.29156 1.15657 0.85485 0.77753 0.79652 0.78358 1.19206 1.21577 1.18911 1.20212 0.86468 0.74341 0.86057 1.90606 1.17028 1.52735 1.86980 1.22751 1.03514 0.98438 0.90858 0.84484 1.22829 0.98063 0.95720 0.97788 1.22875 0.95128 0.94659 1.03083 1.22745 1.03143 0.85268 0.99098 0.80172 1.24048 0.72353 0.86102 0.86279 1.90875 1.48719 1.84892 1.17698 1.84463 1.81233 1.21415 1.45219 0.86935 0.84339 0.87794 0.90708 0.99499 0.97188 0.92868 0.83988 0.92049 0.92616 0.86744 0.71821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.43 18.54 20.01 0.37 -14.06 16 2 C 0.25 6.12 15.43 89.44 1.38 7.50 16 3 C -0.04 -0.98 5.83 28.79 0.17 -0.82 16 4 C 0.12 3.40 5.02 86.38 0.43 3.83 16 5 N -0.59 -23.61 2.08 -826.13 -1.72 -25.33 16 6 C 0.27 14.68 5.17 85.63 0.44 15.12 16 7 C -0.53 -29.09 9.14 25.60 0.23 -28.86 16 8 H 0.07 3.59 7.24 -2.91 -0.02 3.56 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -57.25 13.29 21.44 0.28 -56.96 16 11 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.54 20.61 4.08 87.66 0.36 20.97 16 16 O -0.59 -29.34 14.54 13.23 0.19 -29.15 16 17 C -0.13 -3.03 3.45 -11.01 -0.04 -3.07 16 18 H 0.14 2.02 5.45 -2.39 -0.01 2.01 16 19 C -0.11 -1.89 7.45 31.12 0.23 -1.66 16 20 C -0.12 -2.37 7.20 31.12 0.22 -2.14 16 21 C -0.08 -1.57 4.21 -11.01 -0.05 -1.61 16 22 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 23 C 0.47 12.52 7.74 71.24 0.55 13.07 16 24 O -0.53 -20.33 13.95 27.64 0.39 -19.94 16 25 O -0.51 -10.20 13.42 -51.40 -0.69 -10.89 16 26 H 0.11 3.12 7.31 -2.39 -0.02 3.10 16 27 H 0.14 2.29 7.38 -2.39 -0.02 2.27 16 28 H 0.10 2.17 6.46 -2.39 -0.02 2.16 16 29 H 0.07 2.26 7.83 -2.38 -0.02 2.24 16 30 H -0.01 -0.85 7.49 -2.39 -0.02 -0.87 16 31 H 0.01 0.57 7.85 -2.39 -0.02 0.55 16 32 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 33 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.45 7.99 -2.39 -0.02 1.43 16 35 H 0.06 1.64 7.11 -2.39 -0.02 1.62 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.42 5.90 9.10 -74.06 -0.67 5.22 16 Total: -1.00 -85.61 320.80 5.69 -79.92 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.44 Total: 7.21 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 4.40 Total: 22.94 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -1.06 Total: -96.36 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -0.11 Total: -59.98 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -85.61 5.69 -79.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397110333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.974 kcal (2) G-P(sol) polarization free energy of solvation -85.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds