Wall clock time and date at job start Tue Mar 31 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34106 * 125.84428 * 2 1 4 4 N 1.38885 * 107.02493 * 180.02562 * 3 2 1 5 5 N 1.38923 * 139.09278 * 180.02562 * 4 3 2 6 6 H 0.97009 * 122.52852 * 0.02562 * 5 4 3 7 7 C 1.35609 * 114.94067 * 179.97438 * 5 4 3 8 8 N 1.30377 * 125.22998 * 179.97438 * 7 5 4 9 9 C 1.46499 * 119.99758 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46840 * 120.00430 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99938 * 17 15 13 21 21 S 1.75670 * 109.53802 * 0.26693 * 7 5 4 22 22 C 1.34827 * 106.69034 * 0.02562 * 4 3 2 23 23 N 1.32038 * 108.77577 * 359.97438 * 22 4 3 24 24 H 1.09000 * 109.46927 * 269.95000 * 1 2 3 25 25 H 1.08998 * 109.46951 * 29.94772 * 1 2 3 26 26 H 1.08997 * 109.47338 * 149.95261 * 1 2 3 27 27 H 1.08001 * 126.48939 * 0.06015 * 3 2 1 28 28 H 1.09002 * 109.47391 * 0.02562 * 9 8 7 29 29 H 1.09001 * 109.46813 * 240.00156 * 9 8 7 30 30 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 31 31 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 33 33 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 34 34 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0871 0.0000 4 7 3.6070 0.6391 -0.0006 5 7 4.8942 1.1614 -0.0005 6 1 5.0700 2.1155 0.0005 7 6 5.8865 0.2371 -0.0008 8 7 7.1627 0.5037 -0.0013 9 6 8.1391 -0.5885 -0.0021 10 6 9.0162 -0.4874 -1.2517 11 6 8.1381 -0.5875 -2.5007 12 6 9.7517 0.8542 -1.2514 13 6 10.0202 -1.6113 -1.2529 14 1 10.0318 -2.3259 -0.4432 15 6 10.9239 -1.7273 -2.2877 16 7 10.9095 -0.8574 -3.2740 17 14 12.1689 -3.1199 -2.2889 18 1 11.9774 -3.9560 -1.0766 19 1 11.9759 -3.9554 -3.5013 20 1 13.5426 -2.5559 -2.2899 21 16 5.1879 -1.3747 -0.0089 22 6 3.5569 -0.7083 -0.0015 23 7 2.2918 -1.0865 -0.0009 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3633 0.8904 -0.5130 26 1 -0.3634 -0.8895 -0.5145 27 1 1.9646 2.1162 0.0009 28 1 7.6152 -1.5443 -0.0027 29 1 8.7647 -0.5172 0.8876 30 1 7.4116 0.2251 -2.5000 31 1 8.7629 -0.5159 -3.3909 32 1 7.6141 -1.5433 -2.5008 33 1 10.3772 0.9255 -0.3618 34 1 10.3769 0.9260 -2.1415 35 1 9.0252 1.6668 -1.2508 36 1 11.5450 -0.9392 -4.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:05 Heat of formation + Delta-G solvation = 138.874809 kcal Electronic energy + Delta-G solvation = -19371.359106 eV Core-core repulsion = 16406.237966 eV Total energy + Delta-G solvation = -2965.121140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54404 -38.23193 -36.54865 -33.92610 -31.73573 -31.13745 -30.18686 -27.13359 -25.89543 -25.55432 -25.12992 -23.25354 -21.67583 -19.93452 -19.42905 -18.43994 -17.11117 -16.48398 -16.16483 -15.69896 -14.89481 -14.74456 -14.27183 -14.00166 -13.38901 -13.26621 -12.90673 -12.58311 -12.50997 -12.24042 -11.71768 -11.40747 -11.25173 -10.95330 -10.73774 -10.65378 -10.33240 -10.31795 -10.15936 -9.68516 -9.55292 -9.29881 -9.14307 -8.64038 -8.49752 -8.35323 -7.46402 -5.99210 -4.11091 0.80646 0.96814 1.52552 1.60508 2.13948 2.66669 3.27728 3.36289 3.39667 3.63355 4.38722 4.58214 4.69448 4.90824 5.12789 5.26881 5.42651 5.47769 5.57149 5.71932 5.95222 6.26649 6.30553 6.46440 6.76303 6.79817 6.99567 7.02050 7.09566 7.23030 7.40159 7.58252 7.64051 7.71722 7.92209 8.07226 8.20344 8.42095 8.89384 9.54749 11.01473 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039361 B = 0.003946 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.198383 B = 7093.753724 C = 7379.470381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.033 3.967 3 C -0.034 4.034 4 N -0.265 5.265 5 N -0.508 5.508 6 H 0.444 0.556 7 C 0.346 3.654 8 N -0.499 5.499 9 C 0.079 3.921 10 C 0.077 3.923 11 C -0.130 4.130 12 C -0.123 4.123 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.883 5.883 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 S 0.121 5.879 22 C 0.160 3.840 23 N -0.442 5.442 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.185 0.815 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.007 0.993 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.079 0.921 35 H 0.017 0.983 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 4.763 6.086 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.101 4.101 3 C -0.168 4.168 4 N -0.038 5.038 5 N -0.248 5.248 6 H 0.291 0.709 7 C -0.044 4.044 8 N -0.227 5.227 9 C -0.050 4.050 10 C 0.076 3.924 11 C -0.188 4.188 12 C -0.181 4.181 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 S 0.349 5.651 22 C -0.211 4.211 23 N -0.167 5.167 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.202 0.798 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.026 0.974 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.345 3.601 5.914 16.835 hybrid contribution 0.304 1.211 -0.069 1.250 sum -15.041 4.812 5.844 16.838 Atomic orbital electron populations 1.20069 0.86003 1.03269 1.02754 1.20575 0.96585 0.87329 1.05628 1.22361 0.76651 1.01401 1.16387 1.45180 0.97815 1.06298 1.54554 1.42385 0.90884 1.08142 1.83398 0.70877 1.23733 0.90740 0.88786 1.01131 1.71402 0.95850 1.34806 1.20637 1.22623 0.92072 0.87430 1.02872 1.18158 0.91329 0.95101 0.87827 1.21816 0.97787 0.96499 1.02721 1.21691 0.99021 0.95725 1.01621 1.21080 1.15507 1.11127 1.07296 0.92504 1.24876 0.97193 0.95999 0.95332 1.69839 1.36524 1.35319 1.10455 0.86537 0.81187 0.82253 0.78029 1.19746 1.21015 1.21053 1.86185 0.86160 1.04992 1.87769 1.25995 1.00649 0.82616 1.11804 1.70502 0.96299 1.28708 1.21225 0.90836 0.90804 0.90502 0.79762 0.94349 0.89698 0.97408 0.89658 0.95770 0.95896 0.90209 0.96360 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.42 36.01 0.38 -0.10 16 2 C 0.03 0.39 7.06 -83.08 -0.59 -0.19 16 3 C -0.03 -0.38 11.95 -15.81 -0.19 -0.57 16 4 N -0.26 -3.72 4.37 -12.58 -0.05 -3.78 16 5 N -0.51 -7.12 6.92 30.22 0.21 -6.91 16 6 H 0.44 5.05 8.96 -183.47 -1.64 3.40 16 7 C 0.35 5.79 8.35 -89.96 -0.75 5.04 16 8 N -0.50 -9.39 9.10 -61.66 -0.56 -9.95 16 9 C 0.08 1.65 5.16 -4.04 -0.02 1.63 16 10 C 0.08 1.85 0.57 -155.66 -0.09 1.76 16 11 C -0.13 -3.16 8.09 37.16 0.30 -2.86 16 12 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 13 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 16 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 S 0.12 2.00 21.33 -107.50 -2.29 -0.29 16 22 C 0.16 2.56 8.92 -89.27 -0.80 1.77 16 23 N -0.44 -6.90 11.31 -9.94 -0.11 -7.01 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.04 0.78 6.17 -51.93 -0.32 0.46 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.01 0.16 7.60 -51.93 -0.39 -0.23 16 31 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 35 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -29.81 310.45 -10.35 -40.15 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.89 Total: -0.81 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.82 Total: -8.19 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.00 Total: -51.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.29 Total: -0.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -10.35 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.025 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds