Wall clock time and date at job start Tue Mar 31 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34106 * 125.84428 * 2 1 4 4 N 1.38885 * 107.02493 * 180.02562 * 3 2 1 5 5 N 1.38923 * 139.09278 * 180.02562 * 4 3 2 6 6 H 0.97009 * 122.52852 * 0.02562 * 5 4 3 7 7 C 1.35609 * 114.94067 * 179.97438 * 5 4 3 8 8 N 1.30377 * 125.22998 * 179.97438 * 7 5 4 9 9 C 1.46499 * 119.99758 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46840 * 120.00430 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99938 * 17 15 13 21 21 S 1.75670 * 109.53802 * 0.26693 * 7 5 4 22 22 C 1.34827 * 106.69034 * 0.02562 * 4 3 2 23 23 N 1.32038 * 108.77577 * 359.97438 * 22 4 3 24 24 H 1.09000 * 109.46927 * 269.95000 * 1 2 3 25 25 H 1.08998 * 109.46951 * 29.94772 * 1 2 3 26 26 H 1.08997 * 109.47338 * 149.95261 * 1 2 3 27 27 H 1.08001 * 126.48939 * 0.06015 * 3 2 1 28 28 H 1.09002 * 109.47391 * 0.02562 * 9 8 7 29 29 H 1.09001 * 109.46813 * 240.00156 * 9 8 7 30 30 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 31 31 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 33 33 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 34 34 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0871 0.0000 4 7 3.6070 0.6391 -0.0006 5 7 4.8942 1.1614 -0.0005 6 1 5.0700 2.1155 0.0005 7 6 5.8865 0.2371 -0.0008 8 7 7.1627 0.5037 -0.0013 9 6 8.1391 -0.5885 -0.0021 10 6 9.0162 -0.4874 -1.2517 11 6 8.1381 -0.5875 -2.5007 12 6 9.7517 0.8542 -1.2514 13 6 10.0202 -1.6113 -1.2529 14 1 10.0318 -2.3259 -0.4432 15 6 10.9239 -1.7273 -2.2877 16 7 10.9095 -0.8574 -3.2740 17 14 12.1689 -3.1199 -2.2889 18 1 11.9774 -3.9560 -1.0766 19 1 11.9759 -3.9554 -3.5013 20 1 13.5426 -2.5559 -2.2899 21 16 5.1879 -1.3747 -0.0089 22 6 3.5569 -0.7083 -0.0015 23 7 2.2918 -1.0865 -0.0009 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3633 0.8904 -0.5130 26 1 -0.3634 -0.8895 -0.5145 27 1 1.9646 2.1162 0.0009 28 1 7.6152 -1.5443 -0.0027 29 1 8.7647 -0.5172 0.8876 30 1 7.4116 0.2251 -2.5000 31 1 8.7629 -0.5159 -3.3909 32 1 7.6141 -1.5433 -2.5008 33 1 10.3772 0.9255 -0.3618 34 1 10.3769 0.9260 -2.1415 35 1 9.0252 1.6668 -1.2508 36 1 11.5450 -0.9392 -4.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413415891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:05 Heat of formation + Delta-G solvation = 121.260241 kcal Electronic energy + Delta-G solvation = -19372.122931 eV Core-core repulsion = 16406.237966 eV Total energy + Delta-G solvation = -2965.884965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.60043 -39.52066 -38.16361 -35.47239 -33.22011 -32.27235 -31.50604 -28.04436 -27.64014 -27.40652 -26.99287 -24.57794 -22.74573 -21.25934 -20.60880 -20.01792 -18.32890 -17.98745 -17.56107 -17.06748 -16.71947 -16.22304 -15.40669 -15.20893 -14.71362 -14.55516 -14.29874 -14.06312 -13.59548 -13.21966 -13.16127 -13.10193 -12.92245 -12.67327 -12.54636 -12.29359 -12.14074 -12.10378 -11.44634 -11.37085 -11.34701 -10.85724 -10.44013 -10.40708 -10.29797 -9.70558 -8.71767 -7.99704 -6.17968 -0.36859 -0.20713 0.36019 0.45621 0.80797 1.43197 1.46766 1.56359 1.68656 2.44634 2.55549 3.23205 3.52260 3.76700 3.86616 4.22191 4.33994 4.52094 4.54153 4.70024 4.89057 4.92710 4.96771 5.02408 5.10181 5.15062 5.31402 5.45112 5.53132 5.59847 5.64643 5.68154 5.93621 6.10050 6.22783 6.40756 6.49361 6.69868 6.89405 7.50359 8.99041 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039361 B = 0.003946 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.198383 B = 7093.753724 C = 7379.470381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.020 3.980 3 C -0.016 4.016 4 N -0.267 5.267 5 N -0.494 5.494 6 H 0.457 0.543 7 C 0.360 3.640 8 N -0.523 5.523 9 C 0.090 3.910 10 C 0.068 3.932 11 C -0.114 4.114 12 C -0.110 4.110 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.024 3.976 16 N -0.904 5.904 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.283 1.283 21 S 0.102 5.898 22 C 0.124 3.876 23 N -0.465 5.465 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.233 0.767 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.015 0.985 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 5.730 6.715 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.114 4.114 3 C -0.148 4.148 4 N -0.042 5.042 5 N -0.236 5.236 6 H 0.308 0.692 7 C -0.030 4.030 8 N -0.254 5.254 9 C -0.040 4.040 10 C 0.067 3.933 11 C -0.172 4.172 12 C -0.168 4.168 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.175 4.175 16 N -0.543 5.543 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.209 1.209 21 S 0.330 5.670 22 C -0.245 4.245 23 N -0.191 5.191 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.249 0.751 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.402 4.585 6.551 19.151 hybrid contribution 0.674 0.948 -0.249 1.190 sum -16.728 5.533 6.301 18.712 Atomic orbital electron populations 1.20244 0.82953 1.04549 1.04057 1.21414 0.98385 0.86533 1.05059 1.23288 0.74863 1.03380 1.13279 1.45432 0.98228 1.05868 1.54639 1.42285 0.90757 1.08341 1.82184 0.69250 1.23761 0.90770 0.89396 0.99105 1.71365 0.96321 1.33701 1.23970 1.22248 0.92347 0.88335 1.01052 1.18155 0.91556 0.94249 0.89298 1.21608 0.97335 0.96465 1.01791 1.21519 0.98746 0.96349 1.00161 1.21401 1.16222 1.11798 1.07216 0.92762 1.25548 0.98825 0.97981 0.95168 1.69969 1.37048 1.36504 1.10812 0.85649 0.79073 0.79797 0.77967 1.19219 1.20984 1.20869 1.86168 0.87748 1.05220 1.87892 1.25745 1.00403 0.83516 1.14850 1.70474 0.96576 1.30752 1.21268 0.89433 0.87737 0.91035 0.75087 0.94383 0.89865 0.96622 0.92284 0.96209 0.96028 0.92769 0.95356 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 71.24 0.74 0.04 16 2 C 0.02 0.41 7.06 41.28 0.29 0.70 16 3 C -0.02 -0.28 11.95 82.63 0.99 0.70 16 4 N -0.27 -6.87 4.37 -193.73 -0.85 -7.72 16 5 N -0.49 -12.90 6.92 -58.31 -0.40 -13.31 16 6 H 0.46 9.26 8.96 -214.06 -1.92 7.34 16 7 C 0.36 11.75 8.35 180.12 1.50 13.25 16 8 N -0.52 -19.43 9.10 -348.98 -3.17 -22.61 16 9 C 0.09 3.76 5.16 86.38 0.45 4.20 16 10 C 0.07 3.32 0.57 -52.93 -0.03 3.29 16 11 C -0.11 -5.59 8.09 71.98 0.58 -5.01 16 12 C -0.11 -5.35 8.09 71.98 0.58 -4.77 16 13 C -0.53 -28.01 8.01 25.60 0.21 -27.80 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 15 C 0.02 1.29 5.15 84.66 0.44 1.73 16 16 N -0.90 -50.16 9.35 21.45 0.20 -49.96 16 17 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 S 0.10 3.34 21.33 -56.49 -1.20 2.13 16 22 C 0.12 3.85 8.92 179.88 1.60 5.46 16 23 N -0.46 -13.86 11.31 -185.37 -2.10 -15.96 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.04 1.56 6.17 -2.39 -0.01 1.55 16 29 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.01 0.69 7.60 -2.39 -0.02 0.67 16 31 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.05 2.90 6.07 -2.38 -0.01 2.89 16 35 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -64.77 310.45 1.04 -63.73 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -0.81 Total: 7.09 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 7.35 Total: -8.20 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -6.32 Total: -109.55 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.20 Total: 2.13 kcal Total: -64.77 1.04 -63.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.994 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds