Wall clock time and date at job start Tue Mar 31 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35017 * 119.56103 * 2 1 4 4 C 1.40921 * 119.81150 * 179.97438 * 3 2 1 5 5 O 1.35444 * 120.51325 * 180.02562 * 4 3 2 6 6 C 1.38253 * 118.97726 * 0.02562 * 4 3 2 7 7 C 1.39981 * 119.11919 * 359.73584 * 6 4 3 8 8 O 1.22127 * 119.92869 * 180.26959 * 7 6 4 9 9 N 1.34591 * 120.14399 * 0.51546 * 7 6 4 10 10 C 1.46506 * 119.46896 * 179.77635 * 9 7 6 11 11 C 1.52999 * 109.46684 * 269.72797 * 10 9 7 12 12 C 1.50706 * 109.46573 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00042 * 359.72068 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00205 * 20 18 16 22 22 H 1.48503 * 109.47010 * 210.00270 * 20 18 16 23 23 H 1.48500 * 109.46954 * 330.00103 * 20 18 16 24 24 H 1.08996 * 109.47600 * 270.01801 * 1 2 3 25 25 H 1.09002 * 109.47186 * 30.02050 * 1 2 3 26 26 H 1.09003 * 109.47382 * 150.01702 * 1 2 3 27 27 H 1.08002 * 120.09611 * 0.02861 * 3 2 1 28 28 H 0.96703 * 114.00516 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.44104 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.47212 * 149.72564 * 10 9 7 31 31 H 1.09001 * 109.46577 * 29.72490 * 10 9 7 32 32 H 1.09000 * 109.47486 * 59.99935 * 11 10 9 33 33 H 1.09001 * 109.47362 * 299.99212 * 11 10 9 34 34 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 35 35 H 1.09004 * 109.47212 * 300.00463 * 15 14 12 36 36 H 1.09000 * 109.46684 * 60.00307 * 15 14 12 37 37 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1744 0.0000 4 6 3.5823 1.1806 0.0005 5 8 4.2649 2.3504 0.0011 6 6 4.2574 -0.0259 0.0005 7 6 3.5228 -1.2175 0.0056 8 8 4.1040 -2.2916 0.0107 9 7 2.1774 -1.1821 0.0000 10 6 1.4233 -2.4382 0.0004 11 6 1.1610 -2.8760 -1.4419 12 6 0.3859 -4.1684 -1.4414 13 8 0.0785 -4.6907 -0.3910 14 7 0.0387 -4.7464 -2.6084 15 6 -0.7142 -6.0030 -2.6081 16 6 -0.9728 -6.4342 -4.0287 17 1 -0.6119 -5.8326 -4.8498 18 6 -1.6701 -7.5968 -4.2802 19 7 -1.8953 -7.9733 -5.5200 20 14 -2.2936 -8.6378 -2.8601 21 1 -3.6596 -8.1936 -2.4832 22 1 -2.3328 -10.0641 -3.2717 23 1 -1.3841 -8.4832 -1.6964 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6275 2.1065 0.0005 28 1 5.2262 2.2450 0.0018 29 1 5.3371 -0.0488 0.0014 30 1 0.4733 -2.2915 0.5142 31 1 1.9995 -3.2075 0.5146 32 1 2.1111 -3.0227 -1.9557 33 1 0.5849 -2.1066 -1.9561 34 1 0.2881 -4.3307 -3.4486 35 1 -0.1373 -6.7722 -2.0946 36 1 -1.6641 -5.8572 -2.0937 37 1 -2.3862 -8.7910 -5.6970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:19 Heat of formation + Delta-G solvation = -92.349465 kcal Electronic energy + Delta-G solvation = -21241.539762 eV Core-core repulsion = 17791.346363 eV Total energy + Delta-G solvation = -3450.193399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76001 -39.20878 -38.70331 -37.21075 -34.54307 -34.07350 -32.41410 -31.89002 -30.76477 -27.99279 -27.77143 -24.97418 -22.97077 -22.57297 -21.65990 -19.93777 -18.96176 -17.85952 -17.61239 -16.96052 -16.22613 -15.79869 -15.68566 -15.35327 -15.17912 -14.55621 -14.34613 -14.00053 -13.92417 -13.82351 -13.62211 -13.36822 -12.96528 -12.70239 -12.41827 -12.30879 -12.21701 -11.90188 -11.25600 -11.20455 -11.03462 -10.79578 -10.11470 -10.00309 -9.60477 -9.52542 -9.30256 -8.81496 -8.23459 -8.18717 -6.24318 -4.27053 0.57544 1.65921 2.40339 3.09479 3.21688 3.24531 3.31463 3.39817 3.41085 3.89024 4.14375 4.30836 4.51950 4.68626 4.73915 4.75392 4.90582 5.01977 5.05597 5.10999 5.17859 5.39659 5.42753 5.49234 5.66528 5.73391 5.83082 5.88871 6.21104 6.74762 6.94222 6.98119 7.02227 7.13576 7.34133 7.95936 8.06354 8.44507 8.69592 8.82898 9.35268 10.87615 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.003144 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.777701 B = 8903.045170 C = 8991.852760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.203 3.797 3 C -0.254 4.254 4 C 0.243 3.757 5 O -0.468 6.468 6 C -0.371 4.371 7 C 0.532 3.468 8 O -0.550 6.550 9 N -0.501 5.501 10 C 0.103 3.897 11 C -0.157 4.157 12 C 0.507 3.493 13 O -0.558 6.558 14 N -0.702 5.702 15 C 0.220 3.780 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.407 0.593 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.026 0.974 36 H 0.022 0.978 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 22.050 10.738 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.093 3.907 3 C -0.277 4.277 4 C 0.190 3.810 5 O -0.269 6.269 6 C -0.394 4.394 7 C 0.336 3.664 8 O -0.432 6.432 9 N -0.213 5.213 10 C -0.018 4.018 11 C -0.198 4.198 12 C 0.291 3.709 13 O -0.438 6.438 14 N -0.350 5.350 15 C 0.098 3.902 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.170 0.830 28 H 0.261 0.739 29 H 0.166 0.834 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.231 0.769 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.761 21.055 11.349 24.856 hybrid contribution 0.476 -0.458 0.044 0.662 sum 7.237 20.596 11.392 24.625 Atomic orbital electron populations 1.21259 0.87504 1.05570 1.04889 1.20378 0.95287 0.84805 0.90224 1.19713 0.91009 0.97820 1.19187 1.19239 0.91593 0.84300 0.85847 1.84789 1.25060 1.28740 1.88343 1.22209 1.01119 0.90654 1.25392 1.16520 0.80174 0.90930 0.78814 1.91006 1.67692 1.31294 1.53237 1.45721 1.08417 1.07053 1.60082 1.21750 0.97772 0.84749 0.97560 1.21968 1.02545 0.97264 0.98021 1.20152 0.80224 0.85861 0.84679 1.90668 1.56498 1.65321 1.31353 1.46185 1.55469 1.26049 1.07309 1.19523 0.91149 0.81221 0.98346 1.21085 1.37527 1.09228 0.90478 0.90240 1.24803 0.94999 0.96987 0.95836 1.69879 1.40170 1.24073 1.18763 0.86809 0.80083 0.79751 0.83009 1.19832 1.20855 1.18468 0.88630 0.88555 0.89366 0.83032 0.73938 0.83407 0.87981 0.87051 0.88186 0.88791 0.76860 0.95576 0.96031 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.04 36.01 0.33 -0.43 16 2 C 0.20 1.73 6.65 -81.94 -0.54 1.18 16 3 C -0.25 -2.02 9.57 -39.71 -0.38 -2.40 16 4 C 0.24 2.12 6.95 -38.56 -0.27 1.85 16 5 O -0.47 -3.01 13.58 -18.02 -0.24 -3.26 16 6 C -0.37 -4.02 9.71 -38.92 -0.38 -4.40 16 7 C 0.53 7.48 7.39 -15.69 -0.12 7.36 16 8 O -0.55 -10.00 16.61 4.80 0.08 -9.92 16 9 N -0.50 -5.79 2.59 -115.40 -0.30 -6.09 16 10 C 0.10 1.30 3.96 -4.04 -0.02 1.29 16 11 C -0.16 -2.06 5.83 -27.88 -0.16 -2.23 16 12 C 0.51 9.17 7.83 -10.98 -0.09 9.08 16 13 O -0.56 -11.99 15.98 5.56 0.09 -11.90 16 14 N -0.70 -13.85 5.55 -61.47 -0.34 -14.19 16 15 C 0.22 5.33 4.50 -5.20 -0.02 5.30 16 16 C -0.55 -14.85 9.83 -34.44 -0.34 -15.18 16 17 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 20 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.34 8.07 -51.93 -0.42 -0.08 16 26 H 0.09 0.56 5.58 -51.93 -0.29 0.27 16 27 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.41 0.74 8.75 45.56 0.40 1.14 16 29 H 0.15 1.37 8.00 -52.49 -0.42 0.95 16 30 H 0.10 1.11 6.43 -51.93 -0.33 0.78 16 31 H 0.11 1.71 7.32 -51.93 -0.38 1.33 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 0.96 7.30 -51.93 -0.38 0.58 16 34 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 35 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 36 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -36.41 318.25 -5.68 -42.09 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.78 Total: 3.96 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.09 Total: 3.51 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.13 Total: -45.89 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.08 Total: -25.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.41 -5.68 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.263 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds