Wall clock time and date at job start Tue Mar 31 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48496 * 109.46722 * 269.99888 * 3 2 1 5 5 H 1.48494 * 109.47029 * 29.99630 * 3 2 1 6 6 H 1.48500 * 109.47067 * 150.00073 * 3 2 1 7 7 C 1.37874 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00073 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.48243 * 110.99945 * 69.88084 * 11 10 9 13 13 C 1.51309 * 104.86433 * 267.45624 * 12 11 10 14 14 O 1.21274 * 125.75030 * 163.19958 * 13 12 11 15 15 N 1.34851 * 108.50002 * 343.17958 * 13 12 11 16 16 C 1.46504 * 125.20649 * 179.53424 * 15 13 12 17 17 C 1.53004 * 109.46730 * 90.02741 * 16 15 13 18 18 C 1.52998 * 109.47092 * 180.02562 * 17 16 15 19 19 F 1.39906 * 109.47313 * 59.99906 * 18 17 16 20 20 F 1.39900 * 109.47457 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47284 * 299.99940 * 18 17 16 22 22 C 1.46809 * 109.58976 * 359.57585 * 15 13 12 23 23 H 0.97000 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46642 * 60.00941 * 9 7 2 25 25 H 1.08993 * 109.47461 * 300.00825 * 9 7 2 26 26 H 1.09003 * 109.46588 * 60.00859 * 10 9 7 27 27 H 1.08992 * 109.47186 * 300.00318 * 10 9 7 28 28 H 1.09002 * 110.38139 * 148.57623 * 12 11 10 29 29 H 1.09002 * 110.38001 * 26.33313 * 12 11 10 30 30 H 1.09000 * 109.47238 * 210.02051 * 16 15 13 31 31 H 1.08993 * 109.47270 * 330.02718 * 16 15 13 32 32 H 1.09000 * 109.47414 * 299.99847 * 17 16 15 33 33 H 1.09005 * 109.47156 * 60.00396 * 17 16 15 34 34 H 1.08997 * 110.11653 * 136.76971 * 22 15 13 35 35 H 1.08998 * 110.11505 * 258.35993 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0217 -2.1604 1.2996 13 6 6.2213 -0.6719 1.1154 14 8 6.3658 0.1391 2.0054 15 7 6.2120 -0.3991 -0.2052 16 6 6.3658 0.9338 -0.7935 17 6 7.8489 1.2110 -1.0475 18 6 8.0097 2.6032 -1.6612 19 9 7.5001 3.5630 -0.7801 20 9 9.3659 2.8570 -1.8930 21 9 7.3103 2.6630 -2.8713 22 6 6.0231 -1.6421 -0.9632 23 1 -0.4850 0.8400 -0.0004 24 1 3.8751 -0.6798 0.8896 25 1 3.8745 -0.6808 -0.8904 26 1 3.6579 -3.1505 -0.8898 27 1 3.6585 -3.1502 0.8902 28 1 6.9717 -2.6461 1.5223 29 1 5.3027 -2.3512 2.0964 30 1 5.8210 0.9799 -1.7364 31 1 5.9687 1.6818 -0.1074 32 1 8.3939 1.1649 -0.1046 33 1 8.2461 0.4629 -1.7337 34 1 5.3088 -1.4836 -1.7712 35 1 6.9761 -1.9832 -1.3674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451399024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:08 Heat of formation + Delta-G solvation = -169.556825 kcal Electronic energy + Delta-G solvation = -23192.004793 eV Core-core repulsion = 19196.606691 eV Total energy + Delta-G solvation = -3995.398102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.27348 -47.78507 -47.72975 -40.86440 -37.10735 -35.44071 -33.21665 -31.86965 -30.19139 -27.90273 -26.45131 -24.94425 -22.81556 -22.42657 -20.41847 -19.67403 -18.71631 -18.52916 -17.75488 -17.24904 -16.38512 -16.11904 -15.38504 -15.05882 -14.79983 -14.65839 -14.27597 -14.19771 -14.01247 -13.93582 -13.86156 -13.84228 -13.48375 -12.92819 -12.87251 -12.50605 -12.31578 -12.08148 -11.97614 -11.57248 -11.31769 -11.04311 -10.95390 -10.16848 -9.96105 -9.83991 -9.39528 -8.77185 -8.64467 -8.41152 -6.15751 -4.15498 2.42787 2.62933 2.97760 3.20519 3.32116 3.36028 3.69893 3.84241 3.84851 4.00532 4.35189 4.47739 4.67322 4.71159 5.03691 5.12257 5.19524 5.23776 5.40535 5.45358 5.60651 5.64727 5.82365 6.12479 6.30622 6.38056 6.48741 6.85401 7.06247 7.13797 7.25726 7.66573 8.20254 8.38416 8.87758 9.46404 10.97112 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.006865 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.505319 B = 4077.902760 C = 5092.489575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.041 4.041 10 C 0.044 3.956 11 N -0.503 5.503 12 C 0.006 3.994 13 C 0.504 3.496 14 O -0.524 6.524 15 N -0.636 5.636 16 C 0.130 3.870 17 C -0.184 4.184 18 C 0.457 3.543 19 F -0.180 7.180 20 F -0.185 7.185 21 F -0.182 7.182 22 C 0.250 3.750 23 H 0.264 0.736 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.793 -0.235 -4.245 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.080 4.080 10 C -0.083 4.083 11 N -0.226 5.226 12 C -0.125 4.125 13 C 0.291 3.709 14 O -0.399 6.399 15 N -0.372 5.372 16 C 0.007 3.993 17 C -0.224 4.224 18 C 0.402 3.598 19 F -0.162 7.162 20 F -0.166 7.166 21 F -0.163 7.163 22 C 0.038 3.962 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.856 -0.185 -3.940 18.287 hybrid contribution -0.038 2.079 -0.028 2.080 sum 17.818 1.894 -3.968 18.353 Atomic orbital electron populations 1.69895 1.06259 1.27041 1.50416 1.24983 0.94674 0.99028 0.94277 0.86930 0.80910 0.83964 0.78546 1.20134 1.21173 1.18693 1.20969 0.88954 0.94596 1.51643 0.90757 1.20261 0.98400 0.92844 0.96453 1.22638 0.82973 0.99453 1.03217 1.65935 1.11980 1.41271 1.03402 1.23108 1.03657 0.90949 0.94793 1.21573 0.74697 0.92326 0.82289 1.90718 1.49503 1.54596 1.45088 1.48725 1.73045 1.07586 1.07887 1.21155 0.92517 0.84716 1.00934 1.23336 1.02266 0.91912 1.04866 1.20426 0.73592 0.89201 0.76577 1.93220 1.87048 1.67246 1.68668 1.93187 1.33336 1.95343 1.94763 1.93203 1.79110 1.97019 1.46994 1.23177 1.00636 0.78493 0.93895 0.92581 0.96701 0.96580 0.89940 0.90426 0.86787 0.87223 0.88779 0.88806 0.86855 0.86774 0.89033 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.17 16 7 C -0.52 -14.29 9.66 -34.44 -0.33 -14.63 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.04 -0.91 2.67 -27.88 -0.07 -0.98 16 10 C 0.04 0.77 5.31 -3.82 -0.02 0.75 16 11 N -0.50 -7.14 5.85 -236.96 -1.39 -8.53 16 12 C 0.01 0.08 6.49 -3.94 -0.03 0.06 16 13 C 0.50 8.52 6.19 -10.65 -0.07 8.45 16 14 O -0.52 -10.73 17.74 5.56 0.10 -10.63 16 15 N -0.64 -9.35 1.95 -175.86 -0.34 -9.69 16 16 C 0.13 1.78 5.79 -4.04 -0.02 1.76 16 17 C -0.18 -1.87 5.58 -26.73 -0.15 -2.02 16 18 C 0.46 5.14 3.16 37.16 0.12 5.26 16 19 F -0.18 -2.39 16.80 2.25 0.04 -2.35 16 20 F -0.18 -2.04 17.32 2.25 0.04 -2.00 16 21 F -0.18 -2.16 16.80 2.25 0.04 -2.12 16 22 C 0.25 3.17 6.50 -61.38 -0.40 2.78 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.01 0.35 5.21 -51.93 -0.27 0.08 16 25 H 0.02 0.35 5.38 -51.93 -0.28 0.07 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.08 1.37 7.83 -51.93 -0.41 0.97 16 28 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.60 7.61 -51.93 -0.39 1.20 16 30 H 0.09 1.20 7.80 -51.93 -0.41 0.79 16 31 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.20 6.68 -51.93 -0.35 0.86 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -32.42 300.67 -6.15 -38.58 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.20 Total: -1.71 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.07 Total: 3.41 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.96 Total: -44.79 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.42 -6.15 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451399024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.978 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds