Wall clock time and date at job start Tue Mar 31 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48496 * 109.46722 * 269.99888 * 3 2 1 5 5 H 1.48494 * 109.47029 * 29.99630 * 3 2 1 6 6 H 1.48500 * 109.47067 * 150.00073 * 3 2 1 7 7 C 1.37874 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00073 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.48243 * 110.99945 * 69.88084 * 11 10 9 13 13 C 1.51309 * 104.86433 * 267.45624 * 12 11 10 14 14 O 1.21274 * 125.75030 * 163.19958 * 13 12 11 15 15 N 1.34851 * 108.50002 * 343.17958 * 13 12 11 16 16 C 1.46504 * 125.20649 * 179.53424 * 15 13 12 17 17 C 1.53004 * 109.46730 * 90.02741 * 16 15 13 18 18 C 1.52998 * 109.47092 * 180.02562 * 17 16 15 19 19 F 1.39906 * 109.47313 * 59.99906 * 18 17 16 20 20 F 1.39900 * 109.47457 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47284 * 299.99940 * 18 17 16 22 22 C 1.46809 * 109.58976 * 359.57585 * 15 13 12 23 23 H 0.97000 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46642 * 60.00941 * 9 7 2 25 25 H 1.08993 * 109.47461 * 300.00825 * 9 7 2 26 26 H 1.09003 * 109.46588 * 60.00859 * 10 9 7 27 27 H 1.08992 * 109.47186 * 300.00318 * 10 9 7 28 28 H 1.09002 * 110.38139 * 148.57623 * 12 11 10 29 29 H 1.09002 * 110.38001 * 26.33313 * 12 11 10 30 30 H 1.09000 * 109.47238 * 210.02051 * 16 15 13 31 31 H 1.08993 * 109.47270 * 330.02718 * 16 15 13 32 32 H 1.09000 * 109.47414 * 299.99847 * 17 16 15 33 33 H 1.09005 * 109.47156 * 60.00396 * 17 16 15 34 34 H 1.08997 * 110.11653 * 136.76971 * 22 15 13 35 35 H 1.08998 * 110.11505 * 258.35993 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0217 -2.1604 1.2996 13 6 6.2213 -0.6719 1.1154 14 8 6.3658 0.1391 2.0054 15 7 6.2120 -0.3991 -0.2052 16 6 6.3658 0.9338 -0.7935 17 6 7.8489 1.2110 -1.0475 18 6 8.0097 2.6032 -1.6612 19 9 7.5001 3.5630 -0.7801 20 9 9.3659 2.8570 -1.8930 21 9 7.3103 2.6630 -2.8713 22 6 6.0231 -1.6421 -0.9632 23 1 -0.4850 0.8400 -0.0004 24 1 3.8751 -0.6798 0.8896 25 1 3.8745 -0.6808 -0.8904 26 1 3.6579 -3.1505 -0.8898 27 1 3.6585 -3.1502 0.8902 28 1 6.9717 -2.6461 1.5223 29 1 5.3027 -2.3512 2.0964 30 1 5.8210 0.9799 -1.7364 31 1 5.9687 1.6818 -0.1074 32 1 8.3939 1.1649 -0.1046 33 1 8.2461 0.4629 -1.7337 34 1 5.3088 -1.4836 -1.7712 35 1 6.9761 -1.9832 -1.3674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451399024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:07 Heat of formation + Delta-G solvation = -192.313812 kcal Electronic energy + Delta-G solvation = -23192.991610 eV Core-core repulsion = 19196.606691 eV Total energy + Delta-G solvation = -3996.384919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.18127 -48.68227 -48.66264 -42.07687 -38.46050 -36.57925 -35.15499 -33.22711 -31.72843 -29.17592 -27.64239 -26.34240 -24.19632 -23.51009 -21.88374 -20.90924 -19.62524 -19.49106 -19.27961 -18.55837 -17.54780 -17.49899 -16.65056 -16.41434 -16.20211 -15.79895 -15.58781 -15.28094 -15.11705 -15.03143 -14.84265 -14.79213 -14.77810 -14.55364 -14.09586 -13.93955 -13.80957 -13.15685 -13.06996 -12.94595 -12.75491 -12.63856 -12.47119 -12.03298 -11.70011 -11.47997 -11.27107 -10.83381 -9.94894 -9.70737 -8.38131 -6.40354 1.18969 1.27394 1.34588 1.38009 1.47839 1.97569 2.23667 2.82323 2.83141 2.92986 2.97925 2.99215 3.35858 3.68809 3.76460 4.01247 4.11504 4.19484 4.40557 4.48672 4.55444 4.61184 4.66940 4.69927 4.79541 5.01831 5.15011 5.36202 5.48107 5.53599 5.82275 6.02387 6.21695 6.69260 6.96311 7.24402 8.78156 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.006865 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.505319 B = 4077.902760 C = 5092.489575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.930 3.070 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.044 0.956 9 C -0.031 4.031 10 C 0.054 3.946 11 N -0.486 5.486 12 C 0.010 3.990 13 C 0.491 3.509 14 O -0.571 6.571 15 N -0.634 5.634 16 C 0.122 3.878 17 C -0.168 4.168 18 C 0.458 3.542 19 F -0.196 7.196 20 F -0.182 7.182 21 F -0.185 7.185 22 C 0.244 3.756 23 H 0.265 0.735 24 H -0.001 1.001 25 H 0.027 0.973 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.302 -0.879 -5.494 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.182 4.182 3 Si 0.755 3.245 4 H -0.180 1.180 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.062 0.938 9 C -0.070 4.070 10 C -0.074 4.074 11 N -0.209 5.209 12 C -0.121 4.121 13 C 0.280 3.720 14 O -0.449 6.449 15 N -0.370 5.370 16 C -0.001 4.001 17 C -0.207 4.207 18 C 0.403 3.597 19 F -0.177 7.177 20 F -0.163 7.163 21 F -0.166 7.166 22 C 0.033 3.967 23 H 0.074 0.926 24 H 0.018 0.982 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.171 0.829 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.167 0.833 34 H 0.109 0.891 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 20.388 -0.849 -5.234 21.066 hybrid contribution -0.837 2.233 0.341 2.408 sum 19.551 1.383 -4.893 20.202 Atomic orbital electron populations 1.70028 1.07907 1.27902 1.52636 1.25783 0.95333 1.02541 0.94506 0.85971 0.79220 0.79896 0.79409 1.18014 1.21713 1.18827 1.21391 0.91828 0.93215 1.49823 0.93763 1.20160 0.94772 0.96088 0.95986 1.22432 0.85438 0.96144 1.03415 1.66025 1.09169 1.41662 1.03996 1.23244 1.05230 0.89304 0.94294 1.22109 0.74143 0.93227 0.82542 1.90689 1.51822 1.55954 1.46483 1.48884 1.71992 1.08562 1.07565 1.21220 0.94996 0.83593 1.00318 1.23216 0.99755 0.91932 1.05761 1.20571 0.73521 0.89325 0.76271 1.93195 1.87307 1.68025 1.69218 1.93193 1.33064 1.95351 1.94721 1.93198 1.79222 1.97036 1.47167 1.23564 1.02924 0.77273 0.92898 0.92551 0.98239 0.95476 0.89296 0.90905 0.82917 0.88105 0.87765 0.92026 0.86797 0.83258 0.89084 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.02 0.94 5.47 84.65 0.46 1.40 16 3 Si 0.93 45.35 27.47 68.60 1.88 47.24 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.26 -12.83 6.54 99.48 0.65 -12.18 16 7 C -0.52 -28.87 9.66 25.60 0.25 -28.62 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 9 C -0.03 -1.35 2.67 29.85 0.08 -1.27 16 10 C 0.05 1.78 5.31 86.30 0.46 2.24 16 11 N -0.49 -12.13 5.85 -903.62 -5.29 -17.42 16 12 C 0.01 0.25 6.49 85.49 0.55 0.81 16 13 C 0.49 15.72 6.19 87.84 0.54 16.26 16 14 O -0.57 -23.18 17.74 -3.01 -0.05 -23.23 16 15 N -0.63 -16.89 1.95 -828.65 -1.62 -18.51 16 16 C 0.12 3.06 5.79 86.38 0.50 3.56 16 17 C -0.17 -2.91 5.58 30.59 0.17 -2.74 16 18 C 0.46 9.32 3.16 71.98 0.23 9.55 16 19 F -0.20 -5.00 16.80 44.97 0.76 -4.25 16 20 F -0.18 -3.60 17.32 44.97 0.78 -2.82 16 21 F -0.18 -3.96 16.80 44.97 0.76 -3.20 16 22 C 0.24 5.16 6.50 170.13 1.11 6.27 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.00 -0.03 5.21 -2.39 -0.01 -0.04 16 25 H 0.03 1.11 5.38 -2.39 -0.01 1.10 16 26 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.07 2.49 7.83 -2.39 -0.02 2.48 16 28 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.10 2.77 7.61 -2.39 -0.02 2.76 16 30 H 0.10 2.37 7.80 -2.39 -0.02 2.35 16 31 H 0.06 1.96 7.68 -2.39 -0.02 1.94 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.15 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 2.01 6.68 -2.39 -0.02 2.00 16 35 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.93 300.67 2.93 -69.01 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.06 Total: 4.13 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.35 Total: 7.45 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -6.61 Total: -94.33 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 9 Polarization: -12.55 SS G_CDS: 2.29 Total: -10.27 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -71.93 2.93 -69.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451399024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.305 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds