Wall clock time and date at job start Tue Mar 31 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99718 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00299 * 3 2 1 5 5 H 1.48505 * 109.46889 * 30.00268 * 3 2 1 6 6 H 1.48504 * 109.46716 * 150.00017 * 3 2 1 7 7 C 1.37870 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00103 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.53787 * 57.38663 * 9 7 2 11 11 C 1.54893 * 110.48679 * 294.78024 * 9 7 2 12 12 C 1.54886 * 102.74515 * 203.37790 * 11 9 7 13 13 C 1.54262 * 104.20059 * 37.93964 * 12 11 9 14 14 H 1.08996 * 110.07773 * 217.08260 * 13 12 11 15 15 N 1.46507 * 110.02989 * 95.67377 * 13 12 11 16 16 C 1.34775 * 119.99876 * 87.83856 * 15 13 12 17 17 O 1.21583 * 120.00144 * 359.97438 * 16 15 13 18 18 N 1.34777 * 119.99585 * 179.97438 * 16 15 13 19 19 C 1.46499 * 119.99665 * 179.72218 * 18 16 15 20 20 C 1.53004 * 109.47198 * 180.27868 * 19 18 16 21 21 F 1.39906 * 109.47024 * 60.00093 * 20 19 18 22 22 F 1.39898 * 109.47292 * 179.97438 * 20 19 18 23 23 F 1.39897 * 109.46821 * 299.99881 * 20 19 18 24 24 C 1.53872 * 106.59676 * 336.39275 * 13 12 11 25 25 H 0.96999 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.75489 * 321.68889 * 11 9 7 27 27 H 1.08997 * 110.76066 * 84.87518 * 11 9 7 28 28 H 1.09001 * 110.48870 * 279.25643 * 12 11 9 29 29 H 1.09008 * 110.48496 * 156.62016 * 12 11 9 30 30 H 0.97000 * 119.99601 * 267.83195 * 15 13 12 31 31 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 32 32 H 1.09009 * 109.47454 * 300.27637 * 19 18 16 33 33 H 1.08998 * 109.47492 * 60.27932 * 19 18 16 34 34 H 1.08994 * 110.03407 * 119.28505 * 24 13 12 35 35 H 1.09006 * 110.03030 * 240.71372 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5832 -2.5551 -0.8601 11 6 0.4540 -2.6649 1.3171 12 6 0.2761 -4.2002 1.4181 13 6 1.6127 -4.7708 0.9008 14 1 1.4342 -5.6792 0.3256 15 7 2.5052 -5.0574 2.0268 16 6 2.4505 -6.2553 2.6420 17 8 1.6602 -7.0979 2.2629 18 7 3.2719 -6.5191 3.6774 19 6 3.2083 -7.8190 4.3501 20 6 4.2327 -7.8561 5.4860 21 9 3.9467 -6.8409 6.4052 22 9 4.1715 -9.0972 6.1287 23 9 5.5159 -7.6640 4.9631 24 6 2.2327 -3.6892 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.0252 -2.2856 2.1645 27 1 -0.5122 -2.1648 1.2496 28 1 -0.5493 -4.5309 0.7877 29 1 0.1095 -4.4976 2.4534 30 1 3.1355 -4.3850 2.3293 31 1 3.9022 -5.8468 3.9801 32 1 2.2084 -7.9688 4.7575 33 1 3.4311 -8.6100 3.6340 34 1 3.1976 -3.3776 0.3988 35 1 2.3542 -4.0725 -1.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454205460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:48 Heat of formation + Delta-G solvation = -199.916720 kcal Electronic energy + Delta-G solvation = -21983.818369 eV Core-core repulsion = 17987.103764 eV Total energy + Delta-G solvation = -3996.714605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.50824 -48.02676 -47.97767 -40.04939 -37.41032 -35.05420 -33.64336 -32.00632 -29.48312 -28.16412 -26.86136 -24.00664 -23.48160 -21.35676 -19.58385 -19.52391 -18.97092 -18.78842 -18.65374 -17.23285 -16.60722 -15.88890 -15.62044 -14.98577 -14.83737 -14.67978 -14.47457 -14.41171 -14.18016 -14.12851 -14.09058 -13.95168 -13.35193 -12.83442 -12.38061 -12.24602 -11.72165 -11.05711 -11.03140 -10.89251 -10.58914 -10.48452 -10.07828 -9.95762 -9.59801 -9.51890 -9.24588 -8.84295 -8.59476 -8.37743 -6.03649 -4.06953 2.12696 2.55494 3.21687 3.28000 3.32357 3.35452 3.37162 3.65412 3.80562 4.29524 4.41387 4.84736 4.98163 5.28149 5.51121 5.64118 5.79229 5.99070 6.27386 6.31946 6.50089 6.62103 6.69680 6.82489 6.90047 6.95442 7.23870 7.33964 7.67979 7.83500 7.99141 8.04295 8.40211 8.62130 8.95699 9.57334 11.05742 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.003456 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.626686 B = 8099.003641 C = 8605.830409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.033 0.967 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.157 3.843 14 H 0.078 0.922 15 N -0.723 5.723 16 C 0.709 3.291 17 O -0.590 6.590 18 N -0.752 5.752 19 C 0.101 3.899 20 C 0.448 3.552 21 F -0.178 7.178 22 F -0.175 7.175 23 F -0.179 7.179 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.398 0.602 31 H 0.402 0.598 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -14.103 9.942 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.138 4.138 12 C -0.176 4.176 13 C 0.053 3.947 14 H 0.096 0.904 15 N -0.377 5.377 16 C 0.409 3.591 17 O -0.468 6.468 18 N -0.411 5.411 19 C -0.026 4.026 20 C 0.393 3.607 21 F -0.159 7.159 22 F -0.156 7.156 23 F -0.160 7.160 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.232 0.768 31 H 0.237 0.763 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.742 -14.752 9.577 18.835 hybrid contribution 1.239 1.576 0.616 2.097 sum 7.981 -13.175 10.192 18.471 Atomic orbital electron populations 1.69958 1.05877 1.26473 1.50313 1.24981 0.94824 0.99009 0.95091 0.86655 0.79846 0.83749 0.78069 1.20747 1.21317 1.19999 1.21161 0.92635 0.90495 1.51030 0.92722 1.19474 0.92458 0.91070 0.94100 0.94845 1.22459 1.01354 0.90513 0.99475 1.22863 0.95907 0.99205 0.99600 1.21721 0.89325 0.98396 0.85251 0.90424 1.45488 1.42317 1.14040 1.35850 1.15811 0.80674 0.83413 0.79243 1.90925 1.41225 1.47275 1.67398 1.44748 1.43756 1.16368 1.36277 1.22199 0.98692 0.89087 0.92601 1.20622 0.82055 0.73962 0.84058 1.93238 1.93299 1.60374 1.69030 1.93219 1.96367 1.42808 1.83230 1.93229 1.41673 1.94824 1.86285 1.22625 1.00428 0.95907 0.97135 0.93052 0.93546 0.91479 0.91936 0.93129 0.76779 0.76265 0.87006 0.87028 0.91976 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 12.29 55.43 0.68 -24.19 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.42 8.46 -34.44 -0.29 -13.71 16 8 H 0.05 1.39 7.54 -52.49 -0.40 1.00 16 9 C 0.05 1.12 2.72 -90.11 -0.25 0.87 16 10 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 11 C -0.10 -2.21 5.75 -24.74 -0.14 -2.35 16 12 C -0.14 -2.58 6.54 -25.08 -0.16 -2.74 16 13 C 0.16 2.73 3.25 -66.81 -0.22 2.51 16 14 H 0.08 1.39 7.56 -51.93 -0.39 0.99 16 15 N -0.72 -10.67 5.03 -57.58 -0.29 -10.96 16 16 C 0.71 10.38 8.56 -86.92 -0.74 9.63 16 17 O -0.59 -10.71 16.00 5.29 0.08 -10.62 16 18 N -0.75 -7.95 5.42 -65.22 -0.35 -8.30 16 19 C 0.10 0.88 5.64 -4.04 -0.02 0.86 16 20 C 0.45 3.69 3.11 37.16 0.12 3.80 16 21 F -0.18 -1.64 17.18 2.25 0.04 -1.60 16 22 F -0.17 -1.48 17.32 2.25 0.04 -1.44 16 23 F -0.18 -1.60 17.18 2.25 0.04 -1.56 16 24 C -0.12 -2.33 6.13 -25.62 -0.16 -2.48 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 27 H 0.07 1.65 7.55 -51.93 -0.39 1.25 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.93 8.04 -51.92 -0.42 0.51 16 30 H 0.40 5.13 8.33 -40.82 -0.34 4.79 16 31 H 0.40 3.48 8.37 -40.82 -0.34 3.14 16 32 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -29.80 308.38 -6.42 -36.21 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.32 Total: 4.21 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.96 Total: -2.02 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.04 Total: -43.45 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.12 Total: -4.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.80 -6.42 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454205460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.706 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds