Wall clock time and date at job start Tue Mar 31 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99718 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00299 * 3 2 1 5 5 H 1.48505 * 109.46889 * 30.00268 * 3 2 1 6 6 H 1.48504 * 109.46716 * 150.00017 * 3 2 1 7 7 C 1.37870 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00103 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.53787 * 57.38663 * 9 7 2 11 11 C 1.54893 * 110.48679 * 294.78024 * 9 7 2 12 12 C 1.54886 * 102.74515 * 203.37790 * 11 9 7 13 13 C 1.54262 * 104.20059 * 37.93964 * 12 11 9 14 14 H 1.08996 * 110.07773 * 217.08260 * 13 12 11 15 15 N 1.46507 * 110.02989 * 95.67377 * 13 12 11 16 16 C 1.34775 * 119.99876 * 87.83856 * 15 13 12 17 17 O 1.21583 * 120.00144 * 359.97438 * 16 15 13 18 18 N 1.34777 * 119.99585 * 179.97438 * 16 15 13 19 19 C 1.46499 * 119.99665 * 179.72218 * 18 16 15 20 20 C 1.53004 * 109.47198 * 180.27868 * 19 18 16 21 21 F 1.39906 * 109.47024 * 60.00093 * 20 19 18 22 22 F 1.39898 * 109.47292 * 179.97438 * 20 19 18 23 23 F 1.39897 * 109.46821 * 299.99881 * 20 19 18 24 24 C 1.53872 * 106.59676 * 336.39275 * 13 12 11 25 25 H 0.96999 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.75489 * 321.68889 * 11 9 7 27 27 H 1.08997 * 110.76066 * 84.87518 * 11 9 7 28 28 H 1.09001 * 110.48870 * 279.25643 * 12 11 9 29 29 H 1.09008 * 110.48496 * 156.62016 * 12 11 9 30 30 H 0.97000 * 119.99601 * 267.83195 * 15 13 12 31 31 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 32 32 H 1.09009 * 109.47454 * 300.27637 * 19 18 16 33 33 H 1.08998 * 109.47492 * 60.27932 * 19 18 16 34 34 H 1.08994 * 110.03407 * 119.28505 * 24 13 12 35 35 H 1.09006 * 110.03030 * 240.71372 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5832 -2.5551 -0.8601 11 6 0.4540 -2.6649 1.3171 12 6 0.2761 -4.2002 1.4181 13 6 1.6127 -4.7708 0.9008 14 1 1.4342 -5.6792 0.3256 15 7 2.5052 -5.0574 2.0268 16 6 2.4505 -6.2553 2.6420 17 8 1.6602 -7.0979 2.2629 18 7 3.2719 -6.5191 3.6774 19 6 3.2083 -7.8190 4.3501 20 6 4.2327 -7.8561 5.4860 21 9 3.9467 -6.8409 6.4052 22 9 4.1715 -9.0972 6.1287 23 9 5.5159 -7.6640 4.9631 24 6 2.2327 -3.6892 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.0252 -2.2856 2.1645 27 1 -0.5122 -2.1648 1.2496 28 1 -0.5493 -4.5309 0.7877 29 1 0.1095 -4.4976 2.4534 30 1 3.1355 -4.3850 2.3293 31 1 3.9022 -5.8468 3.9801 32 1 2.2084 -7.9688 4.7575 33 1 3.4311 -8.6100 3.6340 34 1 3.1976 -3.3776 0.3988 35 1 2.3542 -4.0725 -1.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454205460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:48 Heat of formation + Delta-G solvation = -219.322871 kcal Electronic energy + Delta-G solvation = -21984.659883 eV Core-core repulsion = 17987.103764 eV Total energy + Delta-G solvation = -3997.556119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.19518 -48.70745 -48.67386 -41.24028 -38.91831 -36.08214 -35.22712 -33.73388 -30.50241 -29.84783 -28.39020 -25.76417 -24.35646 -22.48728 -21.15341 -20.95342 -19.92339 -19.65511 -19.43996 -18.48871 -18.14855 -17.14265 -16.69311 -16.49981 -16.02067 -15.66577 -15.54414 -15.46435 -15.11037 -15.09929 -14.82095 -14.80354 -14.57939 -14.31676 -13.96439 -13.53126 -12.96376 -12.91685 -12.74620 -12.49013 -12.35502 -12.16021 -11.64189 -11.40795 -11.36892 -11.03982 -10.77861 -10.53213 -10.41874 -9.82737 -8.07592 -6.16845 1.28372 1.44359 1.46005 1.54787 1.73075 2.07687 2.46863 2.64474 2.97110 2.98201 3.23976 3.36188 3.98344 4.06619 4.17385 4.27032 4.30860 4.74618 4.79392 4.96142 5.04602 5.08799 5.15575 5.23138 5.28532 5.47093 5.69103 5.69670 5.86949 5.95939 6.04129 6.41621 6.94212 6.97904 7.48711 7.50911 9.01206 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.003456 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.626686 B = 8099.003641 C = 8605.830409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.038 3.962 10 H 0.000 1.000 11 C -0.089 4.089 12 C -0.126 4.126 13 C 0.171 3.829 14 H 0.079 0.921 15 N -0.720 5.720 16 C 0.711 3.289 17 O -0.625 6.625 18 N -0.738 5.738 19 C 0.100 3.900 20 C 0.459 3.541 21 F -0.182 7.182 22 F -0.174 7.174 23 F -0.181 7.181 24 C -0.110 4.110 25 H 0.258 0.742 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.408 0.592 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.263 -14.743 10.742 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.128 4.128 12 C -0.165 4.165 13 C 0.065 3.935 14 H 0.097 0.903 15 N -0.374 5.374 16 C 0.410 3.590 17 O -0.505 6.505 18 N -0.397 5.397 19 C -0.026 4.026 20 C 0.404 3.596 21 F -0.164 7.164 22 F -0.156 7.156 23 F -0.162 7.162 24 C -0.148 4.148 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.251 0.749 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.435 -15.393 10.412 20.409 hybrid contribution 0.730 1.746 0.382 1.931 sum 9.165 -13.647 10.794 19.665 Atomic orbital electron populations 1.70098 1.07316 1.27021 1.51625 1.25756 0.95555 1.02390 0.95094 0.85668 0.78895 0.79721 0.78016 1.20529 1.21535 1.18823 1.21575 0.93077 0.91675 1.50056 0.92236 1.19458 0.93041 0.92287 0.93308 0.98139 1.22221 0.99248 0.92724 0.98563 1.22750 0.97101 0.96508 1.00143 1.21360 0.88677 0.97651 0.85767 0.90259 1.45253 1.42151 1.14642 1.35372 1.15832 0.80688 0.82753 0.79679 1.90909 1.42811 1.48224 1.68587 1.44562 1.42817 1.17359 1.35011 1.22326 0.99229 0.88259 0.92825 1.20424 0.81696 0.73777 0.83677 1.93234 1.93315 1.60614 1.69229 1.93225 1.96345 1.42798 1.83187 1.93229 1.41881 1.94831 1.86298 1.22431 0.99583 0.94468 0.98353 0.93304 0.94175 0.94713 0.91949 0.92462 0.75528 0.74930 0.86433 0.86096 0.90942 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.67 12.29 21.45 0.26 -52.41 16 2 C 0.01 0.57 5.35 84.65 0.45 1.02 16 3 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.53 -27.32 8.46 25.60 0.22 -27.10 16 8 H 0.06 2.97 7.54 -2.91 -0.02 2.94 16 9 C 0.04 1.78 2.72 -10.46 -0.03 1.75 16 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 11 C -0.09 -4.00 5.75 31.89 0.18 -3.82 16 12 C -0.13 -4.67 6.54 31.67 0.21 -4.46 16 13 C 0.17 5.66 3.25 45.71 0.15 5.81 16 14 H 0.08 2.69 7.56 -2.39 -0.02 2.67 16 15 N -0.72 -19.63 5.03 -454.36 -2.29 -21.92 16 16 C 0.71 19.23 8.56 179.05 1.53 20.76 16 17 O -0.62 -21.50 16.00 -3.98 -0.06 -21.57 16 18 N -0.74 -13.78 5.42 -478.53 -2.59 -16.37 16 19 C 0.10 1.50 5.64 86.38 0.49 1.99 16 20 C 0.46 6.54 3.11 71.98 0.22 6.76 16 21 F -0.18 -2.97 17.18 44.97 0.77 -2.20 16 22 F -0.17 -2.60 17.32 44.97 0.78 -1.82 16 23 F -0.18 -2.82 17.18 44.97 0.77 -2.05 16 24 C -0.11 -4.03 6.13 31.32 0.19 -3.84 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.04 1.81 8.05 -2.39 -0.02 1.79 16 27 H 0.03 1.75 7.55 -2.39 -0.02 1.73 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 30 H 0.41 9.47 8.33 -92.71 -0.77 8.70 16 31 H 0.41 6.01 8.37 -92.71 -0.78 5.23 16 32 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.50 7.13 -2.39 -0.02 2.48 16 35 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -63.35 308.38 2.88 -60.47 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.41 Total: 14.68 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 3.62 Total: -1.11 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -4.62 Total: -90.70 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 2.32 Total: -6.06 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -63.35 2.88 -60.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454205460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.849 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds