Wall clock time and date at job start Tue Mar 31 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00067 * 2 1 4 4 C 1.53002 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47098 * 65.00339 * 4 3 2 6 6 C 1.36912 * 119.99744 * 269.99961 * 5 4 3 7 7 H 1.07999 * 119.99825 * 17.12149 * 6 5 4 8 8 C 1.39018 * 119.99582 * 197.11492 * 6 5 4 9 9 N 1.31380 * 120.00366 * 17.95041 * 8 6 5 10 10 Si 1.86801 * 119.99882 * 197.95219 * 8 6 5 11 11 H 1.48507 * 109.47147 * 65.00063 * 10 8 6 12 12 H 1.48495 * 109.47144 * 184.99791 * 10 8 6 13 13 H 1.48502 * 109.47201 * 304.99981 * 10 8 6 14 14 C 1.34776 * 119.99840 * 89.99793 * 5 4 3 15 15 O 1.21614 * 120.00060 * 241.63531 * 14 5 4 16 16 C 1.47506 * 119.99657 * 61.64113 * 14 5 4 17 17 C 1.40318 * 120.50269 * 28.97424 * 16 14 5 18 18 C 1.36956 * 118.46567 * 180.29790 * 17 16 14 19 19 C 1.39158 * 119.39993 * 359.95247 * 18 17 16 20 20 O 1.35513 * 119.51056 * 180.02562 * 19 18 17 21 21 N 1.32420 * 120.97952 * 0.04534 * 19 18 17 22 22 C 1.31695 * 121.66716 * 359.97438 * 21 19 18 23 23 C 1.50707 * 119.75708 * 180.02562 * 22 21 19 24 24 H 1.08999 * 109.46739 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47340 * 299.99599 * 1 2 3 26 26 H 1.09007 * 109.47035 * 59.99653 * 1 2 3 27 27 H 1.08999 * 109.46985 * 60.00226 * 3 2 1 28 28 H 1.08998 * 109.47250 * 300.00080 * 3 2 1 29 29 H 1.09003 * 109.47379 * 305.00337 * 4 3 2 30 30 H 1.09000 * 109.46976 * 185.00688 * 4 3 2 31 31 H 0.96999 * 120.00131 * 184.96133 * 9 8 6 32 32 H 1.07991 * 120.76631 * 0.27348 * 17 16 14 33 33 H 1.08003 * 120.29884 * 180.02562 * 18 17 16 34 34 H 0.96695 * 113.99544 * 270.02434 * 20 19 18 35 35 H 1.09000 * 109.47065 * 263.97904 * 23 22 21 36 36 H 1.09002 * 109.46989 * 23.98014 * 23 22 21 37 37 H 1.09001 * 109.47000 * 143.97749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7972 -1.3345 7 1 3.6185 -1.4280 -0.6005 8 6 4.8376 -1.3672 -2.3642 9 7 5.6972 -0.6369 -3.0379 10 14 4.6094 -3.1717 -2.7902 11 1 3.2322 -3.3893 -3.3014 12 1 5.5919 -3.5622 -3.8329 13 1 4.8226 -3.9980 -1.5749 14 6 4.2634 1.3330 -2.3200 15 8 3.6241 1.2092 -3.3471 16 6 5.3527 2.3247 -2.2442 17 6 6.4502 2.1137 -1.3958 18 6 7.4349 3.0647 -1.3535 19 6 7.3205 4.2023 -2.1468 20 8 8.2937 5.1444 -2.1071 21 7 6.2744 4.3781 -2.9395 22 6 5.3045 3.4902 -3.0114 23 6 4.1339 3.7337 -3.9289 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8509 0.5684 0.8427 30 1 3.9785 2.1765 0.0903 31 1 6.1604 -1.0144 -3.8020 32 1 6.5167 1.2223 -0.7898 33 1 8.2931 2.9323 -0.7113 34 1 8.1498 5.8307 -1.4414 35 1 3.3146 4.1767 -3.3627 36 1 4.4331 4.4131 -4.7270 37 1 3.8075 2.7875 -4.3604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457205013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:43 Heat of formation + Delta-G solvation = -56.089896 kcal Electronic energy + Delta-G solvation = -22750.812229 eV Core-core repulsion = 19302.191163 eV Total energy + Delta-G solvation = -3448.621066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16398 -38.49327 -37.24544 -36.49815 -34.54198 -32.42013 -31.95872 -30.80968 -28.89405 -27.19917 -25.93004 -24.69105 -23.29832 -22.15329 -21.64385 -19.68455 -18.29681 -17.26862 -16.33496 -16.03209 -15.77014 -15.43671 -15.29600 -14.77127 -14.35500 -14.03059 -13.78715 -13.55096 -13.19880 -12.73472 -12.42732 -12.24799 -11.97240 -11.71520 -11.56125 -11.46122 -11.37092 -11.31117 -11.07737 -10.90721 -10.64994 -10.42997 -10.13481 -9.26716 -9.18687 -9.09812 -8.97947 -8.37739 -8.11719 -7.42736 -6.18305 -3.55343 1.27618 1.81714 3.29926 3.39905 3.42519 3.61083 3.97537 4.27380 4.31198 4.42190 4.83940 5.08860 5.26487 5.46735 5.48733 5.54456 5.63796 5.66574 5.77455 5.81117 5.90145 5.94062 6.03186 6.05549 6.10545 6.23309 6.33692 6.49817 6.60326 6.77408 6.93377 7.07611 7.66064 7.68713 7.77045 8.09781 8.38575 8.98840 9.22993 9.51476 9.96413 10.95260 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.007088 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.666481 B = 3949.359501 C = 4875.190087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.046 3.954 4 C 0.131 3.869 5 N -0.533 5.533 6 C -0.273 4.273 7 H 0.090 0.910 8 C 0.023 3.977 9 N -0.883 5.883 10 Si 0.916 3.084 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.619 3.381 15 O -0.514 6.514 16 C -0.149 4.149 17 C 0.001 3.999 18 C -0.206 4.206 19 C 0.302 3.698 20 O -0.486 6.486 21 N -0.515 5.515 22 C 0.176 3.824 23 C -0.122 4.122 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.269 0.731 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 7.585 7.480 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.006 3.994 5 N -0.260 5.260 6 C -0.399 4.399 7 H 0.108 0.892 8 C -0.179 4.179 9 N -0.525 5.525 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.410 3.590 15 O -0.390 6.390 16 C -0.155 4.155 17 C -0.025 4.025 18 C -0.227 4.227 19 C 0.123 3.877 20 O -0.292 6.292 21 N -0.235 5.235 22 C 0.038 3.962 23 C -0.179 4.179 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.184 7.723 5.873 9.946 hybrid contribution -0.081 -1.086 0.537 1.214 sum -2.265 6.637 6.410 9.501 Atomic orbital electron populations 1.22651 0.82839 1.02028 0.98928 1.88073 1.17959 1.27294 1.95048 1.23204 0.96318 0.84999 0.98713 1.21117 0.90971 0.97670 0.89662 1.42492 1.70393 1.05455 1.07692 1.19283 1.26929 0.79964 1.13759 0.89184 1.25015 0.94566 0.99449 0.98820 1.69384 1.24388 1.38537 1.20205 0.86158 0.77921 0.83493 0.78006 1.20510 1.21534 1.20394 1.16974 0.81008 0.77659 0.83396 1.90396 1.49315 1.65756 1.33498 1.21470 0.99518 0.95870 0.98687 1.21417 0.90583 0.96678 0.93786 1.21703 1.01606 0.96545 1.02890 1.19219 0.86966 0.89220 0.92312 1.84740 1.42323 1.39869 1.62293 1.66943 1.01930 1.33560 1.21092 1.21201 0.93026 0.88269 0.93727 1.21165 0.93387 1.05631 0.97709 0.90253 0.95154 0.94648 0.94155 0.93877 0.90799 0.91795 0.91978 0.83549 0.84880 0.75172 0.91350 0.91600 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.93 10.06 -35.23 -0.35 -7.28 16 3 C 0.05 0.79 6.28 37.16 0.23 1.03 16 4 C 0.13 2.43 5.89 -4.04 -0.02 2.40 16 5 N -0.53 -12.53 2.13 -116.00 -0.25 -12.78 16 6 C -0.27 -7.08 9.13 -14.99 -0.14 -7.22 16 7 H 0.09 2.32 7.77 -52.49 -0.41 1.91 16 8 C 0.02 0.63 5.05 -17.46 -0.09 0.54 16 9 N -0.88 -24.64 11.14 55.50 0.62 -24.02 16 10 Si 0.92 21.66 29.59 -169.99 -5.03 16.63 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.62 15.12 3.64 -12.48 -0.05 15.08 16 15 O -0.51 -14.01 14.08 5.26 0.07 -13.94 16 16 C -0.15 -3.25 5.13 -104.82 -0.54 -3.79 16 17 C 0.00 0.02 9.50 -39.26 -0.37 -0.35 16 18 C -0.21 -3.53 9.97 -39.70 -0.40 -3.93 16 19 C 0.30 5.36 7.74 -16.96 -0.13 5.22 16 20 O -0.49 -7.15 13.55 -18.23 -0.25 -7.39 16 21 N -0.52 -10.16 10.30 -9.17 -0.09 -10.25 16 22 C 0.18 3.63 6.82 -82.13 -0.56 3.07 16 23 C -0.12 -2.29 9.50 36.01 0.34 -1.95 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 30 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.15 2.99 7.92 -52.49 -0.42 2.57 16 33 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.39 3.49 9.06 45.56 0.41 3.90 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.12 2.52 5.25 -51.93 -0.27 2.24 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -32.92 320.81 -5.06 -37.98 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.01 Total: 4.53 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.60 Total: 11.69 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.28 Total: -47.05 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.53 Total: -28.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.92 -5.06 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457205013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.110 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds