Wall clock time and date at job start Tue Mar 31 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00016 * 2 1 4 4 C 1.52997 * 109.47056 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47194 * 64.99811 * 4 3 2 6 6 C 1.36796 * 120.00346 * 265.84676 * 5 4 3 7 7 H 1.07998 * 120.00291 * 138.88865 * 6 5 4 8 8 C 1.39103 * 119.99919 * 318.88649 * 6 5 4 9 9 N 1.31326 * 120.00090 * 343.62669 * 8 6 5 10 10 Si 1.86806 * 119.99956 * 163.62014 * 8 6 5 11 11 H 1.48502 * 109.47071 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47068 * 120.00260 * 10 8 6 13 13 H 1.48503 * 109.46930 * 240.00433 * 10 8 6 14 14 C 1.34774 * 119.99791 * 85.84800 * 5 4 3 15 15 O 1.21563 * 120.00172 * 3.99453 * 14 5 4 16 16 C 1.48015 * 119.99989 * 183.99615 * 14 5 4 17 17 C 1.40057 * 120.89969 * 150.81800 * 16 14 5 18 18 C 1.37926 * 119.12566 * 180.27938 * 17 16 14 19 19 C 1.50700 * 119.51040 * 179.74842 * 18 17 16 20 20 N 1.31942 * 120.98440 * 359.76780 * 18 17 16 21 21 C 1.32190 * 121.98759 * 359.97438 * 20 18 17 22 22 O 1.35685 * 119.62008 * 179.97438 * 21 20 18 23 23 C 1.38853 * 120.76507 * 359.97438 * 21 20 18 24 24 H 1.09000 * 109.47670 * 300.00201 * 1 2 3 25 25 H 1.09008 * 109.46789 * 60.00265 * 1 2 3 26 26 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47134 * 59.99951 * 3 2 1 28 28 H 1.08998 * 109.47022 * 299.99951 * 3 2 1 29 29 H 1.09008 * 109.47299 * 305.00360 * 4 3 2 30 30 H 1.08992 * 109.47252 * 184.99972 * 4 3 2 31 31 H 0.97004 * 119.99897 * 179.97438 * 9 8 6 32 32 H 1.08005 * 120.43916 * 0.02749 * 17 16 14 33 33 H 1.08999 * 109.46699 * 270.02014 * 19 18 17 34 34 H 1.08994 * 109.47526 * 30.01906 * 19 18 17 35 35 H 1.09002 * 109.47476 * 150.02441 * 19 18 17 36 36 H 0.96705 * 113.99370 * 270.02266 * 22 21 20 37 37 H 1.07998 * 120.53506 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.1795 -0.7876 -1.3097 7 1 3.8579 -1.3447 -2.1772 8 6 4.8000 -1.4445 -0.2522 9 7 5.4727 -0.7584 0.6430 10 14 4.6762 -3.3027 -0.1052 11 1 3.8682 -3.8356 -1.2314 12 1 6.0376 -3.8944 -0.1484 13 1 4.0240 -3.6550 1.1816 14 6 4.1827 1.3245 -2.3442 15 8 4.0731 2.5331 -2.2734 16 6 4.5426 0.6882 -3.6313 17 6 4.1874 1.2797 -4.8501 18 6 4.5363 0.6521 -6.0277 19 6 4.1536 1.2780 -7.3441 20 7 5.1998 -0.4883 -6.0190 21 6 5.5602 -1.0801 -4.8932 22 8 6.2411 -2.2528 -4.9402 23 6 5.2500 -0.5156 -3.6631 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5684 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.9051 -1.2164 1.3807 32 1 3.6440 2.2129 -4.8677 33 1 3.1730 0.9122 -7.6488 34 1 4.1190 2.3619 -7.2347 35 1 4.8917 1.0125 -8.1010 36 1 5.6746 -3.0366 -4.9431 37 1 5.5459 -1.0026 -2.7457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:47 Heat of formation + Delta-G solvation = -70.807917 kcal Electronic energy + Delta-G solvation = -22562.980863 eV Core-core repulsion = 19113.721575 eV Total energy + Delta-G solvation = -3449.259287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15854 -38.57805 -37.08579 -36.61243 -34.93282 -32.51726 -31.78394 -31.09687 -29.23580 -27.04319 -25.92389 -25.12434 -23.74898 -22.16988 -21.53791 -19.39103 -18.33739 -17.20384 -16.42484 -15.92559 -15.62401 -15.25987 -15.10092 -15.06634 -14.51007 -14.42816 -13.98772 -13.68145 -13.42464 -12.98331 -12.76956 -12.21344 -12.08126 -11.81543 -11.69393 -11.52657 -11.28170 -11.20495 -11.14214 -11.04605 -10.78740 -10.44137 -10.19713 -9.30043 -9.25978 -9.13483 -9.06772 -8.51559 -8.23019 -7.61799 -6.49993 -4.19065 1.43141 1.58160 3.07615 3.18122 3.20716 3.60833 3.99451 4.06498 4.34279 4.38813 4.54116 4.91162 5.02812 5.39224 5.54713 5.59222 5.64997 5.72155 5.77671 5.80676 5.90689 5.96587 5.97576 6.04446 6.07486 6.20494 6.40231 6.48030 6.64935 6.88536 7.05514 7.14969 7.31546 7.67873 7.85675 7.93128 8.20204 8.37396 8.90908 9.28541 9.71390 10.52004 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.007639 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.783426 B = 3664.700758 C = 4772.612409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.052 3.948 4 C 0.114 3.886 5 N -0.410 5.410 6 C -0.332 4.332 7 H 0.093 0.907 8 C 0.050 3.950 9 N -0.855 5.855 10 Si 0.916 3.084 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.502 3.498 15 O -0.599 6.599 16 C -0.035 4.035 17 C -0.144 4.144 18 C 0.124 3.876 19 C -0.096 4.096 20 N -0.506 5.506 21 C 0.287 3.713 22 O -0.482 6.482 23 C -0.142 4.142 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.273 0.727 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.394 0.606 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 -0.900 -4.932 7.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.126 5.126 6 C -0.460 4.460 7 H 0.111 0.889 8 C -0.157 4.157 9 N -0.490 5.490 10 Si 0.741 3.259 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.292 3.708 15 O -0.486 6.486 16 C -0.046 4.046 17 C -0.165 4.165 18 C -0.013 4.013 19 C -0.154 4.154 20 N -0.227 5.227 21 C 0.109 3.891 22 O -0.288 6.288 23 C -0.163 4.163 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.873 -0.595 -5.398 7.296 hybrid contribution -0.909 -0.752 1.033 1.568 sum -5.782 -1.347 -4.365 7.368 Atomic orbital electron populations 1.22652 0.83268 1.01817 0.98907 1.88126 1.17515 1.27669 1.95062 1.23032 0.96279 0.84422 0.98856 1.21511 0.89303 0.99380 0.90707 1.43152 1.54676 1.07081 1.07703 1.19459 1.37987 0.81953 1.06566 0.88917 1.25383 0.93910 1.00267 0.96161 1.69826 1.28566 1.36884 1.13753 0.86052 0.78159 0.82617 0.79024 1.19006 1.20490 1.20265 1.18174 0.81788 0.86119 0.84759 1.90621 1.58226 1.13853 1.85919 1.20352 0.96001 0.93747 0.94454 1.21972 1.01782 1.01153 0.91560 1.20700 0.94799 0.90611 0.95223 1.20640 1.01921 0.99896 0.92917 1.66662 1.12324 1.11401 1.32359 1.19149 0.93136 0.89004 0.87854 1.84775 1.34488 1.13633 1.95926 1.23560 0.96323 0.96306 1.00160 0.95058 0.94965 0.90362 0.93954 0.94091 0.86785 0.90692 0.91669 0.84491 0.90831 0.90801 0.90830 0.75027 0.79834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.44 10.37 -35.23 -0.37 -7.80 16 3 C 0.05 1.03 6.26 37.16 0.23 1.26 16 4 C 0.11 2.62 5.33 -4.04 -0.02 2.60 16 5 N -0.41 -9.99 2.46 -115.83 -0.28 -10.28 16 6 C -0.33 -7.99 5.86 -15.02 -0.09 -8.07 16 7 H 0.09 2.19 6.07 -52.49 -0.32 1.87 16 8 C 0.05 1.20 4.98 -17.45 -0.09 1.11 16 9 N -0.85 -21.50 11.47 55.50 0.64 -20.87 16 10 Si 0.92 18.85 29.58 -169.99 -5.03 13.82 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.50 12.28 7.45 -12.25 -0.09 12.18 16 15 O -0.60 -15.59 16.40 5.31 0.09 -15.50 16 16 C -0.03 -0.76 5.61 -104.67 -0.59 -1.35 16 17 C -0.14 -2.73 9.32 -39.01 -0.36 -3.09 16 18 C 0.12 2.14 6.77 -82.66 -0.56 1.58 16 19 C -0.10 -1.21 10.16 36.01 0.37 -0.84 16 20 N -0.51 -9.53 10.27 -9.61 -0.10 -9.63 16 21 C 0.29 5.53 7.74 -17.17 -0.13 5.40 16 22 O -0.48 -8.19 13.56 -18.76 -0.25 -8.45 16 23 C -0.14 -2.98 7.80 -38.82 -0.30 -3.29 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.11 2.78 5.65 -51.92 -0.29 2.48 16 30 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 31 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.14 2.42 7.98 -52.48 -0.42 2.00 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.39 4.67 9.06 45.56 0.41 5.08 16 37 H 0.18 4.10 5.22 -52.49 -0.27 3.83 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -30.29 318.57 -4.82 -35.11 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.79 Total: 9.71 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -0.52 Total: 9.08 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.25 Total: -40.77 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.53 Total: -31.75 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.29 -4.82 -35.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.697 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds