Wall clock time and date at job start Tue Mar 31 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47095 * 269.99709 * 3 2 1 5 5 H 1.48503 * 109.47257 * 29.99674 * 3 2 1 6 6 H 1.48499 * 109.46959 * 149.99215 * 3 2 1 7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00238 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99954 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46804 * 179.97438 * 11 10 9 13 13 C 1.48243 * 110.99945 * 69.88084 * 12 11 10 14 14 C 1.51309 * 104.86433 * 267.45624 * 13 12 11 15 15 O 1.21274 * 125.75030 * 163.19958 * 14 13 12 16 16 N 1.34851 * 108.50002 * 343.17958 * 14 13 12 17 17 C 1.46504 * 125.20649 * 179.53424 * 16 14 13 18 18 C 1.53004 * 109.46730 * 90.02741 * 17 16 14 19 19 F 1.39893 * 109.47141 * 60.00222 * 18 17 16 20 20 F 1.39895 * 109.46989 * 180.02562 * 18 17 16 21 21 F 1.39900 * 109.47007 * 300.00265 * 18 17 16 22 22 C 1.46809 * 109.58976 * 359.57585 * 16 14 13 23 23 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47195 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.46696 * 299.99905 * 9 7 2 26 26 H 1.09003 * 109.46923 * 60.00311 * 10 9 7 27 27 H 1.08993 * 109.47350 * 300.00090 * 10 9 7 28 28 H 1.09003 * 109.46588 * 60.00619 * 11 10 9 29 29 H 1.08992 * 109.47186 * 300.00079 * 11 10 9 30 30 H 1.09002 * 110.38139 * 148.57623 * 13 12 11 31 31 H 1.09002 * 110.38001 * 26.33313 * 13 12 11 32 32 H 1.09000 * 109.47238 * 210.02051 * 17 16 14 33 33 H 1.08993 * 109.47270 * 330.02718 * 17 16 14 34 34 H 1.08997 * 110.11653 * 136.76971 * 22 16 14 35 35 H 1.08998 * 110.11505 * 258.35993 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0411 -4.0215 0.0014 13 6 5.7693 -4.6815 -1.2978 14 6 4.4325 -5.3658 -1.1134 15 8 3.7160 -5.7727 -2.0033 16 7 4.1721 -5.4474 0.2072 17 6 2.9667 -6.0366 0.7957 18 6 3.1997 -7.5272 1.0502 19 9 4.2747 -7.6873 1.9310 20 9 2.0485 -8.0899 1.6116 21 9 3.4888 -8.1673 -0.1597 22 6 5.2810 -4.8547 0.9651 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1501 -0.8893 27 1 3.6578 -3.1505 0.8906 28 1 5.9148 -2.1228 0.8911 29 1 5.9148 -2.1226 -0.8889 30 1 6.5440 -5.4154 -1.5202 31 1 5.7096 -3.9404 -2.0949 32 1 2.7416 -5.5379 1.7384 33 1 2.1292 -5.9117 0.1095 34 1 4.8935 -4.2339 1.7728 35 1 5.9203 -5.6395 1.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488245375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:05 Heat of formation + Delta-G solvation = -168.269440 kcal Electronic energy + Delta-G solvation = -23116.762720 eV Core-core repulsion = 19121.420444 eV Total energy + Delta-G solvation = -3995.342276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.17434 -47.71847 -47.63776 -41.10560 -37.41223 -35.12993 -33.66498 -31.77761 -29.65782 -28.36784 -26.92481 -24.43926 -23.45850 -21.63464 -20.56420 -20.02090 -18.65094 -18.57131 -17.91560 -16.87650 -16.65868 -16.20516 -15.52688 -15.38850 -14.57209 -14.56744 -14.32775 -14.10628 -14.04069 -13.89701 -13.81809 -13.79746 -13.27257 -13.16864 -12.71505 -12.67384 -12.59604 -12.11684 -11.89400 -11.57012 -11.19970 -10.84259 -10.61575 -10.13001 -9.88496 -9.87227 -9.33889 -9.10468 -8.66020 -8.61728 -6.11790 -4.10966 2.26351 2.41087 2.82528 3.24724 3.32562 3.34209 3.67931 3.68499 3.86905 4.14884 4.31199 4.37727 4.71421 4.90735 4.99081 5.15850 5.22087 5.28378 5.37019 5.46491 5.56563 5.83529 5.88375 5.98273 6.31112 6.36994 6.62799 6.82058 6.87388 7.12202 7.26037 7.69558 7.94160 8.44344 8.91477 9.50040 11.01564 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.005134 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.217695 B = 5452.619340 C = 6088.873301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.068 0.932 9 C -0.010 4.010 10 C -0.136 4.136 11 C 0.028 3.972 12 N -0.497 5.497 13 C 0.006 3.994 14 C 0.504 3.496 15 O -0.506 6.506 16 N -0.639 5.639 17 C 0.096 3.904 18 C 0.433 3.567 19 F -0.184 7.184 20 F -0.181 7.181 21 F -0.177 7.177 22 C 0.250 3.750 23 H 0.264 0.736 24 H 0.017 0.983 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.061 -12.186 3.590 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.048 4.048 10 C -0.175 4.175 11 C -0.100 4.100 12 N -0.220 5.220 13 C -0.124 4.124 14 C 0.291 3.709 15 O -0.378 6.378 16 N -0.377 5.377 17 C -0.030 4.030 18 C 0.377 3.623 19 F -0.166 7.166 20 F -0.162 7.162 21 F -0.159 7.159 22 C 0.038 3.962 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.081 -12.288 3.259 17.537 hybrid contribution -0.648 0.691 -0.047 0.949 sum 11.433 -11.596 3.212 16.598 Atomic orbital electron populations 1.69913 1.06339 1.26979 1.50799 1.25043 0.94740 0.99232 0.94450 0.86763 0.80292 0.83570 0.78545 1.20280 1.21348 1.19004 1.21076 0.89403 0.94355 1.51238 0.91342 1.19498 0.97345 0.91601 0.96319 1.22220 0.93029 1.01024 1.01206 1.22850 0.95869 0.87517 1.03745 1.65911 1.49189 1.03111 1.03764 1.23144 0.94468 1.00470 0.94368 1.21605 0.88800 0.78406 0.82066 1.90771 1.53743 1.48536 1.44770 1.48666 1.20060 1.60650 1.08302 1.22395 0.89884 0.86235 1.04482 1.21367 0.74029 0.92657 0.74220 1.93170 1.56906 1.96662 1.69823 1.93196 1.50124 1.87301 1.85584 1.93227 1.93355 1.84309 1.44980 1.23275 0.84489 0.94959 0.93433 0.92666 0.96460 0.97057 0.92958 0.92279 0.89563 0.90049 0.86241 0.86955 0.85290 0.85224 0.88749 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 10 C -0.14 -2.40 3.79 -26.73 -0.10 -2.50 16 11 C 0.03 0.37 5.37 -3.82 -0.02 0.35 16 12 N -0.50 -5.74 5.85 -236.96 -1.39 -7.12 16 13 C 0.01 0.08 6.49 -3.94 -0.03 0.05 16 14 C 0.50 7.49 5.94 -10.65 -0.06 7.43 16 15 O -0.51 -9.42 17.74 5.56 0.10 -9.32 16 16 N -0.64 -8.12 1.81 -175.86 -0.32 -8.44 16 17 C 0.10 1.12 6.01 -4.04 -0.02 1.09 16 18 C 0.43 5.11 3.29 37.16 0.12 5.23 16 19 F -0.18 -2.08 17.17 2.25 0.04 -2.04 16 20 F -0.18 -2.15 17.32 2.25 0.04 -2.11 16 21 F -0.18 -2.49 17.00 2.25 0.04 -2.45 16 22 C 0.25 2.68 6.44 -61.38 -0.40 2.28 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 26 H 0.05 1.01 6.15 -51.93 -0.32 0.69 16 27 H 0.06 1.01 5.95 -51.93 -0.31 0.70 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 30 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 1.31 7.61 -51.93 -0.40 0.92 16 32 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.13 1.65 8.02 -51.93 -0.42 1.24 16 34 H 0.09 0.97 6.68 -51.93 -0.35 0.62 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -32.58 301.46 -6.13 -38.71 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.24 Total: -2.22 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.05 Total: 0.62 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.93 Total: -42.25 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.10 Total: -9.32 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.12 Total: -6.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.58 -6.13 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488245375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.559 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds