Wall clock time and date at job start Tue Mar 31 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47095 * 269.99709 * 3 2 1 5 5 H 1.48503 * 109.47257 * 29.99674 * 3 2 1 6 6 H 1.48499 * 109.46959 * 149.99215 * 3 2 1 7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00238 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99954 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46804 * 179.97438 * 11 10 9 13 13 C 1.48243 * 110.99945 * 69.88084 * 12 11 10 14 14 C 1.51309 * 104.86433 * 267.45624 * 13 12 11 15 15 O 1.21274 * 125.75030 * 163.19958 * 14 13 12 16 16 N 1.34851 * 108.50002 * 343.17958 * 14 13 12 17 17 C 1.46504 * 125.20649 * 179.53424 * 16 14 13 18 18 C 1.53004 * 109.46730 * 90.02741 * 17 16 14 19 19 F 1.39893 * 109.47141 * 60.00222 * 18 17 16 20 20 F 1.39895 * 109.46989 * 180.02562 * 18 17 16 21 21 F 1.39900 * 109.47007 * 300.00265 * 18 17 16 22 22 C 1.46809 * 109.58976 * 359.57585 * 16 14 13 23 23 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47195 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.46696 * 299.99905 * 9 7 2 26 26 H 1.09003 * 109.46923 * 60.00311 * 10 9 7 27 27 H 1.08993 * 109.47350 * 300.00090 * 10 9 7 28 28 H 1.09003 * 109.46588 * 60.00619 * 11 10 9 29 29 H 1.08992 * 109.47186 * 300.00079 * 11 10 9 30 30 H 1.09002 * 110.38139 * 148.57623 * 13 12 11 31 31 H 1.09002 * 110.38001 * 26.33313 * 13 12 11 32 32 H 1.09000 * 109.47238 * 210.02051 * 17 16 14 33 33 H 1.08993 * 109.47270 * 330.02718 * 17 16 14 34 34 H 1.08997 * 110.11653 * 136.76971 * 22 16 14 35 35 H 1.08998 * 110.11505 * 258.35993 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0411 -4.0215 0.0014 13 6 5.7693 -4.6815 -1.2978 14 6 4.4325 -5.3658 -1.1134 15 8 3.7160 -5.7727 -2.0033 16 7 4.1721 -5.4474 0.2072 17 6 2.9667 -6.0366 0.7957 18 6 3.1997 -7.5272 1.0502 19 9 4.2747 -7.6873 1.9310 20 9 2.0485 -8.0899 1.6116 21 9 3.4888 -8.1673 -0.1597 22 6 5.2810 -4.8547 0.9651 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1501 -0.8893 27 1 3.6578 -3.1505 0.8906 28 1 5.9148 -2.1228 0.8911 29 1 5.9148 -2.1226 -0.8889 30 1 6.5440 -5.4154 -1.5202 31 1 5.7096 -3.9404 -2.0949 32 1 2.7416 -5.5379 1.7384 33 1 2.1292 -5.9117 0.1095 34 1 4.8935 -4.2339 1.7728 35 1 5.9203 -5.6395 1.3696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488245375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:05 Heat of formation + Delta-G solvation = -191.128149 kcal Electronic energy + Delta-G solvation = -23117.753948 eV Core-core repulsion = 19121.420444 eV Total energy + Delta-G solvation = -3996.333504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.16971 -48.69727 -48.65707 -42.15530 -38.60844 -36.35444 -35.32999 -33.54106 -30.86109 -29.43036 -28.33478 -25.74427 -24.52370 -23.07147 -21.86599 -21.19463 -19.65338 -19.56557 -19.02792 -18.82975 -17.71448 -17.32256 -16.64072 -16.55294 -16.16953 -15.60703 -15.55318 -15.21167 -15.12945 -15.09619 -14.87569 -14.82824 -14.81371 -14.40313 -14.28887 -13.69910 -13.65382 -13.33256 -13.19568 -12.99145 -12.59778 -12.35586 -12.16835 -11.79324 -11.54519 -11.39667 -11.25685 -10.77468 -10.15909 -9.77953 -8.30266 -6.35108 1.18664 1.36924 1.38165 1.41283 1.50006 1.82212 2.35698 2.71090 2.71621 2.90076 3.05880 3.17064 3.32109 3.73918 3.95124 4.00400 4.18867 4.30529 4.40853 4.48349 4.51343 4.55942 4.71757 4.90171 5.05390 5.12296 5.19470 5.45936 5.54621 5.65121 5.73794 5.87165 6.26237 6.73431 6.83229 7.30017 8.86680 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.005134 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.217695 B = 5452.619340 C = 6088.873301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.532 4.532 8 H 0.023 0.977 9 C -0.009 4.009 10 C -0.125 4.125 11 C 0.037 3.963 12 N -0.481 5.481 13 C 0.011 3.989 14 C 0.492 3.508 15 O -0.556 6.556 16 N -0.639 5.639 17 C 0.092 3.908 18 C 0.441 3.559 19 F -0.176 7.176 20 F -0.181 7.181 21 F -0.192 7.192 22 C 0.245 3.755 23 H 0.265 0.735 24 H 0.031 0.969 25 H 0.016 0.984 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.075 -11.310 4.682 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.570 4.570 8 H 0.041 0.959 9 C -0.047 4.047 10 C -0.164 4.164 11 C -0.091 4.091 12 N -0.203 5.203 13 C -0.119 4.119 14 C 0.280 3.720 15 O -0.433 6.433 16 N -0.376 5.376 17 C -0.033 4.033 18 C 0.386 3.614 19 F -0.158 7.158 20 F -0.163 7.163 21 F -0.173 7.173 22 C 0.035 3.965 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.136 -11.430 4.390 19.468 hybrid contribution -1.671 0.316 -0.356 1.738 sum 13.464 -11.114 4.034 17.919 Atomic orbital electron populations 1.70089 1.08551 1.28139 1.52766 1.26102 0.95611 1.03831 0.94106 0.85608 0.79815 0.77839 0.79057 1.19639 1.21319 1.15884 1.21495 0.92522 0.92639 1.50331 0.95864 1.19467 0.93476 0.94863 0.96862 1.22077 0.96433 0.97716 1.00199 1.22765 0.92119 0.89037 1.05150 1.66006 1.48398 1.02226 1.03686 1.23265 0.93272 1.00861 0.94532 1.22269 0.89553 0.77946 0.82220 1.90737 1.55432 1.50866 1.46265 1.48839 1.20585 1.60033 1.08110 1.22469 0.89248 0.86522 1.05097 1.21245 0.74091 0.92328 0.73786 1.93180 1.56532 1.96620 1.69456 1.93195 1.50236 1.87310 1.85512 1.93202 1.93475 1.84608 1.46044 1.23571 0.84198 0.95723 0.93043 0.92629 0.95117 0.96565 0.95392 0.92118 0.87687 0.89206 0.83469 0.86800 0.82818 0.87109 0.87725 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 3 Si 0.95 42.90 27.47 68.60 1.88 44.78 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.02 1.46 7.99 -2.91 -0.02 1.43 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.13 -4.22 3.79 30.60 0.12 -4.11 16 11 C 0.04 0.86 5.37 86.30 0.46 1.33 16 12 N -0.48 -9.41 5.85 -903.62 -5.29 -14.70 16 13 C 0.01 0.24 6.49 85.49 0.55 0.80 16 14 C 0.49 14.40 5.94 87.84 0.52 14.92 16 15 O -0.56 -21.42 17.74 -3.01 -0.05 -21.47 16 16 N -0.64 -15.53 1.81 -828.65 -1.50 -17.03 16 17 C 0.09 2.13 6.01 86.38 0.52 2.65 16 18 C 0.44 10.13 3.29 71.98 0.24 10.37 16 19 F -0.18 -3.66 17.17 44.97 0.77 -2.88 16 20 F -0.18 -4.24 17.32 44.97 0.78 -3.46 16 21 F -0.19 -5.40 17.00 44.97 0.76 -4.64 16 22 C 0.24 4.49 6.44 170.13 1.10 5.58 16 23 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 25 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 26 H 0.03 1.07 6.15 -2.39 -0.01 1.05 16 27 H 0.06 1.99 5.95 -2.39 -0.01 1.98 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.00 7.83 -2.39 -0.02 1.98 16 30 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.11 2.43 7.61 -2.39 -0.02 2.41 16 32 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.11 3.00 8.02 -2.39 -0.02 2.99 16 34 H 0.10 1.77 6.68 -2.39 -0.02 1.75 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.85 301.46 3.05 -69.80 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.06 Total: 6.98 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 4.34 Total: 2.12 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -6.49 Total: -91.22 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 2.32 Total: -10.99 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -72.85 3.05 -69.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488245375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.328 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds