Wall clock time and date at job start Tue Mar 31 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.50703 * 109.47045 * 120.00015 * 2 1 3 5 5 N 1.30015 * 127.33627 * 299.99799 * 4 2 1 6 6 O 1.20654 * 112.30570 * 179.97438 * 5 4 2 7 7 C 1.33494 * 113.15353 * 359.75861 * 6 5 4 8 8 C 1.37357 * 106.34359 * 0.38410 * 7 6 5 9 9 C 1.47398 * 128.56853 * 179.90882 * 8 7 6 10 10 O 1.21603 * 120.00340 * 179.67824 * 9 8 7 11 11 N 1.34781 * 119.99825 * 359.68284 * 9 8 7 12 12 C 1.47571 * 134.49423 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11996 * 155.35733 * 12 11 9 14 14 O 1.42904 * 113.73883 * 269.15369 * 13 12 11 15 15 C 1.50701 * 113.74318 * 137.95533 * 13 12 11 16 16 H 1.08002 * 119.99761 * 1.91855 * 15 13 12 17 17 C 1.37871 * 119.99694 * 182.20418 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 C 1.47807 * 134.45550 * 359.86262 * 11 9 8 24 24 H 1.09003 * 109.46978 * 60.00049 * 1 2 3 25 25 H 1.09003 * 109.47505 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47657 * 300.00062 * 1 2 3 27 27 H 1.09003 * 109.47006 * 239.99558 * 2 1 3 28 28 H 1.08993 * 109.47182 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46890 * 300.00428 * 3 2 1 30 30 H 1.09003 * 109.46795 * 59.99410 * 3 2 1 31 31 H 1.07998 * 126.83175 * 180.30297 * 7 6 5 32 32 H 1.09004 * 113.77444 * 41.05348 * 12 11 9 33 33 H 1.09004 * 113.87147 * 269.67091 * 12 11 9 34 34 H 0.96703 * 113.99734 * 178.06891 * 14 13 12 35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 36 36 H 1.08997 * 113.77160 * 90.37973 * 23 11 9 37 37 H 1.09008 * 113.84085 * 318.92046 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8078 -0.3930 2.4711 6 8 2.3433 -1.1512 3.2419 7 6 3.0246 -2.1244 2.6330 8 6 2.8805 -1.9112 1.2837 9 6 3.4339 -2.6955 0.1651 10 8 3.2008 -2.3665 -0.9821 11 7 4.1983 -3.7773 0.4139 12 6 4.8962 -4.7667 -0.4298 13 6 5.8313 -4.9787 0.7746 14 8 6.9816 -4.1308 0.7661 15 6 6.1691 -6.4244 1.0335 16 1 5.7868 -7.1938 0.3790 17 6 6.9613 -6.7652 2.1092 18 7 7.4268 -5.8283 2.9061 19 14 7.3735 -8.5579 2.4345 20 1 6.7318 -9.4089 1.4007 21 1 8.8461 -8.7440 2.3854 22 1 6.8702 -8.9459 3.7767 23 6 4.6755 -4.4474 1.6419 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.5798 -2.9203 3.1069 32 1 5.3906 -4.3324 -1.2988 33 1 4.2925 -5.6402 -0.6764 34 1 7.5564 -4.2401 1.5360 35 1 7.9838 -6.0682 3.6631 36 1 4.0055 -5.2263 2.0060 37 1 4.9939 -3.7586 2.4244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529070858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:14 Heat of formation + Delta-G solvation = 2.917116 kcal Electronic energy + Delta-G solvation = -22208.138526 eV Core-core repulsion = 18762.076196 eV Total energy + Delta-G solvation = -3446.062330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.74387 -39.57289 -37.48100 -36.10197 -34.08480 -32.51260 -32.31285 -31.51589 -28.71953 -27.19584 -25.80220 -25.53119 -23.75995 -23.48013 -20.37067 -19.87395 -18.93962 -17.66242 -17.50037 -17.01196 -16.31378 -15.59103 -15.19312 -14.85752 -14.67867 -14.35274 -14.18117 -13.43860 -13.34996 -13.20891 -12.68689 -12.46140 -12.26580 -12.11418 -11.69539 -11.66457 -11.35995 -11.33687 -11.17373 -11.09543 -10.75810 -10.58093 -10.39580 -9.82031 -9.81619 -9.55276 -9.36421 -8.86396 -8.55884 -7.99587 -6.48556 -4.59076 1.29138 1.93591 3.03311 3.08548 3.19035 3.22360 3.46113 3.61802 4.10659 4.12685 4.38046 4.74143 4.91298 5.05815 5.11333 5.16485 5.22593 5.47452 5.56634 5.57887 5.75799 5.77038 5.80725 5.91326 6.01873 6.09008 6.18405 6.22480 6.31397 6.40581 6.45755 6.54704 6.97285 7.54302 7.71305 8.27242 8.31876 8.45236 8.59455 9.12706 9.31968 10.58377 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.004359 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.889794 B = 6421.485866 C = 6807.676826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.141 4.141 4 C 0.073 3.927 5 N -0.361 5.361 6 O 0.090 5.910 7 C -0.010 4.010 8 C -0.239 4.239 9 C 0.606 3.394 10 O -0.553 6.553 11 N -0.626 5.626 12 C 0.116 3.884 13 C 0.241 3.759 14 O -0.571 6.571 15 C -0.538 4.538 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.068 3.932 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.229 0.771 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.088 0.912 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 6.187 0.388 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.199 4.199 4 C -0.090 4.090 5 N -0.068 5.068 6 O 0.031 5.969 7 C -0.092 4.092 8 C -0.246 4.246 9 C 0.396 3.604 10 O -0.434 6.434 11 N -0.359 5.359 12 C -0.005 4.005 13 C 0.199 3.801 14 O -0.383 6.383 15 C -0.576 4.576 16 H 0.091 0.909 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.055 4.055 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.219 7.703 -0.006 12.014 hybrid contribution 0.915 -1.737 0.530 2.033 sum -8.305 5.966 0.524 10.239 Atomic orbital electron populations 1.21799 0.93677 1.02167 1.02166 1.19788 0.95983 0.95647 0.93028 1.21800 1.01467 0.94464 1.02142 1.24774 0.96670 0.93799 0.93720 1.73556 1.17197 1.14212 1.01848 1.84549 1.48800 1.29597 1.33933 1.26881 0.95736 0.94050 0.92524 1.22420 1.07230 1.00657 0.94280 1.16449 0.77401 0.79922 0.86652 1.90696 1.60795 1.70227 1.21670 1.50073 1.47906 1.25021 1.12865 1.23490 0.91320 0.88825 0.96870 1.19817 0.82715 0.89100 0.88435 1.86080 1.37379 1.64029 1.50803 1.21527 1.32389 0.91489 1.12214 0.90869 1.25060 0.94301 0.98715 0.94863 1.69397 1.34652 1.33064 1.16669 0.86281 0.78446 0.83522 0.78314 1.19412 1.20597 1.20647 1.24567 0.97595 0.94220 0.89079 0.91679 0.92528 0.92376 0.86897 0.92414 0.91678 0.92377 0.75534 0.90792 0.89264 0.75282 0.91635 0.89411 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.17 37.16 0.34 -1.33 16 2 C -0.03 -0.36 3.33 -91.77 -0.31 -0.67 16 3 C -0.14 -1.73 9.18 37.16 0.34 -1.39 16 4 C 0.07 1.19 6.09 -79.76 -0.49 0.71 16 5 N -0.36 -5.72 12.01 34.78 0.42 -5.30 16 6 O 0.09 1.34 11.06 18.65 0.21 1.55 16 7 C -0.01 -0.15 11.42 30.41 0.35 0.20 16 8 C -0.24 -4.17 6.46 -102.89 -0.66 -4.83 16 9 C 0.61 12.25 8.04 -12.53 -0.10 12.15 16 10 O -0.55 -12.29 15.98 5.27 0.08 -12.21 16 11 N -0.63 -12.55 3.61 -179.39 -0.65 -13.20 16 12 C 0.12 2.39 8.23 -2.97 -0.02 2.37 16 13 C 0.24 5.40 1.40 -90.84 -0.13 5.27 16 14 O -0.57 -13.91 13.49 -35.23 -0.48 -14.38 16 15 C -0.54 -12.70 8.61 -34.44 -0.30 -12.99 16 16 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 17 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 18 N -0.90 -21.40 11.21 55.43 0.62 -20.78 16 19 Si 0.91 18.55 29.54 -169.99 -5.02 13.53 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 C 0.07 1.32 6.70 -2.83 -0.02 1.30 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 1.81 6.29 -51.93 -0.33 1.48 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.23 2.87 5.49 -52.49 -0.29 2.59 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 34 H 0.39 9.61 6.61 45.56 0.30 9.91 16 35 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 37 H 0.07 1.31 6.41 -51.92 -0.33 0.98 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -27.06 316.33 -5.13 -32.19 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.99 Total: 11.44 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.09 Total: 2.41 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.39 Total: -39.28 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.18 Total: -25.04 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.06 -5.13 -32.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529070858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.103 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds