Wall clock time and date at job start Tue Mar 31 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.50703 * 109.47045 * 120.00015 * 2 1 3 5 5 N 1.30015 * 127.33627 * 299.99799 * 4 2 1 6 6 O 1.20654 * 112.30570 * 179.97438 * 5 4 2 7 7 C 1.33494 * 113.15353 * 359.75861 * 6 5 4 8 8 C 1.37357 * 106.34359 * 0.38410 * 7 6 5 9 9 C 1.47398 * 128.56853 * 179.90882 * 8 7 6 10 10 O 1.21603 * 120.00340 * 179.67824 * 9 8 7 11 11 N 1.34781 * 119.99825 * 359.68284 * 9 8 7 12 12 C 1.47571 * 134.49423 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11996 * 155.35733 * 12 11 9 14 14 O 1.42904 * 113.73883 * 269.15369 * 13 12 11 15 15 C 1.50701 * 113.74318 * 137.95533 * 13 12 11 16 16 H 1.08002 * 119.99761 * 1.91855 * 15 13 12 17 17 C 1.37871 * 119.99694 * 182.20418 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 C 1.47807 * 134.45550 * 359.86262 * 11 9 8 24 24 H 1.09003 * 109.46978 * 60.00049 * 1 2 3 25 25 H 1.09003 * 109.47505 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47657 * 300.00062 * 1 2 3 27 27 H 1.09003 * 109.47006 * 239.99558 * 2 1 3 28 28 H 1.08993 * 109.47182 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46890 * 300.00428 * 3 2 1 30 30 H 1.09003 * 109.46795 * 59.99410 * 3 2 1 31 31 H 1.07998 * 126.83175 * 180.30297 * 7 6 5 32 32 H 1.09004 * 113.77444 * 41.05348 * 12 11 9 33 33 H 1.09004 * 113.87147 * 269.67091 * 12 11 9 34 34 H 0.96703 * 113.99734 * 178.06891 * 14 13 12 35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 36 36 H 1.08997 * 113.77160 * 90.37973 * 23 11 9 37 37 H 1.09008 * 113.84085 * 318.92046 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8078 -0.3930 2.4711 6 8 2.3433 -1.1512 3.2419 7 6 3.0246 -2.1244 2.6330 8 6 2.8805 -1.9112 1.2837 9 6 3.4339 -2.6955 0.1651 10 8 3.2008 -2.3665 -0.9821 11 7 4.1983 -3.7773 0.4139 12 6 4.8962 -4.7667 -0.4298 13 6 5.8313 -4.9787 0.7746 14 8 6.9816 -4.1308 0.7661 15 6 6.1691 -6.4244 1.0335 16 1 5.7868 -7.1938 0.3790 17 6 6.9613 -6.7652 2.1092 18 7 7.4268 -5.8283 2.9061 19 14 7.3735 -8.5579 2.4345 20 1 6.7318 -9.4089 1.4007 21 1 8.8461 -8.7440 2.3854 22 1 6.8702 -8.9459 3.7767 23 6 4.6755 -4.4474 1.6419 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.5798 -2.9203 3.1069 32 1 5.3906 -4.3324 -1.2988 33 1 4.2925 -5.6402 -0.6764 34 1 7.5564 -4.2401 1.5360 35 1 7.9838 -6.0682 3.6631 36 1 4.0055 -5.2263 2.0060 37 1 4.9939 -3.7586 2.4244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529070858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:14 Heat of formation + Delta-G solvation = -14.872786 kcal Electronic energy + Delta-G solvation = -22208.909954 eV Core-core repulsion = 18762.076196 eV Total energy + Delta-G solvation = -3446.833758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.99834 -41.19260 -39.09469 -37.25942 -35.84799 -34.14032 -33.80779 -32.73575 -30.36042 -28.14842 -27.47481 -27.14392 -25.17797 -24.63997 -21.95859 -21.07064 -20.47102 -19.37053 -18.75749 -18.47082 -17.75647 -17.21837 -16.85781 -16.33626 -16.07120 -15.78647 -15.48883 -14.94408 -14.71341 -14.37083 -14.25824 -14.01348 -13.77874 -13.41259 -13.17183 -12.87553 -12.84941 -12.76564 -12.35961 -12.35336 -12.23667 -12.18817 -11.93234 -11.44055 -11.04042 -11.02965 -10.84594 -10.64414 -10.28429 -9.63505 -8.25733 -6.41811 -0.00594 0.67050 1.47293 1.53364 1.61407 1.65234 2.07417 2.12778 2.42747 2.88156 2.97879 3.16862 3.47401 3.78030 3.84051 4.06916 4.09545 4.09761 4.13338 4.38146 4.48457 4.60444 4.65678 4.68800 4.75900 4.83079 4.84479 4.88672 4.95612 5.05440 5.22143 5.23557 5.32422 5.74743 5.93575 6.64228 6.69951 6.98949 7.10966 7.31806 7.45466 8.80533 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.004359 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.889794 B = 6421.485866 C = 6807.676826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 C -0.135 4.135 4 C 0.070 3.930 5 N -0.365 5.365 6 O 0.097 5.903 7 C 0.019 3.981 8 C -0.272 4.272 9 C 0.604 3.396 10 O -0.581 6.581 11 N -0.627 5.627 12 C 0.116 3.884 13 C 0.221 3.779 14 O -0.586 6.586 15 C -0.555 4.555 16 H 0.072 0.928 17 C 0.039 3.961 18 N -0.913 5.913 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.082 3.918 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.389 0.611 35 H 0.276 0.724 36 H 0.104 0.896 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 6.111 1.295 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 C -0.193 4.193 4 C -0.093 4.093 5 N -0.073 5.073 6 O 0.040 5.960 7 C -0.063 4.063 8 C -0.280 4.280 9 C 0.395 3.605 10 O -0.464 6.464 11 N -0.360 5.360 12 C -0.006 4.006 13 C 0.180 3.820 14 O -0.398 6.398 15 C -0.593 4.593 16 H 0.090 0.910 17 C -0.163 4.163 18 N -0.554 5.554 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.040 4.040 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.088 7.630 0.914 12.682 hybrid contribution 1.212 -1.704 0.238 2.105 sum -8.876 5.926 1.152 10.734 Atomic orbital electron populations 1.21765 0.91826 1.02044 1.03499 1.19887 0.97528 0.96265 0.91313 1.21774 1.00583 0.93412 1.03532 1.25108 0.96201 0.93481 0.94474 1.73554 1.17611 1.14491 1.01612 1.84554 1.48465 1.29385 1.33628 1.27162 0.94033 0.93523 0.91553 1.22279 1.09302 1.01851 0.94541 1.16766 0.76997 0.79731 0.87042 1.90673 1.61898 1.70865 1.23009 1.50065 1.47933 1.25073 1.12907 1.23518 0.91389 0.89644 0.96060 1.20078 0.82902 0.88737 0.90306 1.86071 1.38282 1.64611 1.50830 1.21721 1.33003 0.92069 1.12487 0.90969 1.25643 0.94170 1.01728 0.94711 1.69446 1.34801 1.34245 1.16861 0.85409 0.77658 0.79817 0.78143 1.19360 1.21106 1.20190 1.24437 0.96379 0.94488 0.88691 0.89411 0.93375 0.91945 0.89055 0.93749 0.89348 0.91905 0.73389 0.91985 0.87466 0.75729 0.91424 0.87834 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.17 71.98 0.66 -2.32 16 2 C -0.03 -0.85 3.33 -11.54 -0.04 -0.88 16 3 C -0.14 -3.15 9.18 71.98 0.66 -2.48 16 4 C 0.07 2.23 6.09 45.16 0.28 2.50 16 5 N -0.37 -11.01 12.01 -44.77 -0.54 -11.54 16 6 O 0.10 2.71 11.06 76.98 0.85 3.56 16 7 C 0.02 0.53 11.42 67.61 0.77 1.31 16 8 C -0.27 -9.28 6.46 -18.74 -0.12 -9.40 16 9 C 0.60 24.28 8.04 86.65 0.70 24.97 16 10 O -0.58 -26.20 15.98 -4.04 -0.06 -26.26 16 11 N -0.63 -24.79 3.61 -843.55 -3.05 -27.83 16 12 C 0.12 4.73 8.23 86.49 0.71 5.44 16 13 C 0.22 9.79 1.40 -10.88 -0.02 9.77 16 14 O -0.59 -28.66 13.49 -148.98 -2.01 -30.67 16 15 C -0.55 -25.75 8.61 25.60 0.22 -25.53 16 16 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 17 C 0.04 1.77 5.40 84.65 0.46 2.23 16 18 N -0.91 -42.72 11.21 21.45 0.24 -42.48 16 19 Si 0.96 37.19 29.54 68.60 2.03 39.22 16 20 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 23 C 0.08 3.07 6.70 86.45 0.58 3.65 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 2.95 6.29 -2.39 -0.02 2.94 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.25 5.63 5.49 -2.91 -0.02 5.61 16 32 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.11 3.94 8.09 -2.39 -0.02 3.92 16 34 H 0.39 19.13 6.61 -74.06 -0.49 18.64 16 35 H 0.28 12.27 8.31 -92.71 -0.77 11.50 16 36 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 37 H 0.08 2.81 6.41 -2.38 -0.02 2.80 16 Total: -1.00 -56.56 316.33 2.93 -53.63 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.62 Total: 33.13 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.86 Total: 9.25 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -3.34 Total: -81.86 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -1.22 Total: -53.37 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -56.56 2.93 -53.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529070858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.755 kcal (2) G-P(sol) polarization free energy of solvation -56.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds