Wall clock time and date at job start Tue Mar 31 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47541 * 2 1 4 4 N 1.29412 * 125.69791 * 89.97468 * 3 2 1 5 5 N 1.26394 * 116.47358 * 180.02562 * 4 3 2 6 6 C 1.29410 * 116.48104 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.70067 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46661 * 90.02575 * 7 6 5 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47317 * 55.00605 * 10 9 8 12 12 C 1.47200 * 109.47506 * 294.99833 * 10 9 8 13 13 N 8.67467 * 136.99127 * 6.87757 * 2 1 3 14 14 C 1.53009 * 109.46984 * 175.00052 * 10 9 8 15 15 C 1.50697 * 109.47152 * 185.00255 * 14 10 9 16 16 H 1.08002 * 120.00031 * 359.97438 * 15 14 10 17 17 C 1.37878 * 119.99823 * 179.97438 * 15 14 10 18 18 N 1.31518 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99950 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46777 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46844 * 120.00258 * 19 17 15 22 22 H 1.48507 * 109.46924 * 240.00162 * 19 17 15 23 23 S 1.71221 * 108.60689 * 0.22744 * 6 5 4 24 24 H 1.09002 * 109.46888 * 300.00326 * 1 2 3 25 25 H 1.08997 * 109.46968 * 60.00102 * 1 2 3 26 26 H 1.09002 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46888 * 239.99674 * 2 1 3 28 28 H 1.09002 * 109.47396 * 120.00076 * 2 1 3 29 29 H 1.08995 * 109.47155 * 330.02624 * 7 6 5 30 30 H 1.08997 * 109.47111 * 210.02545 * 7 6 5 31 31 H 1.00902 * 111.00533 * 56.04452 * 8 7 6 32 32 H 1.09000 * 109.47033 * 300.00113 * 9 8 7 33 33 H 1.09001 * 109.46544 * 60.00058 * 9 8 7 34 34 H 1.09003 * 109.46685 * 305.00467 * 14 10 9 35 35 H 1.08996 * 109.46802 * 64.99886 * 14 10 9 36 36 H 0.96996 * 120.00202 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2837 2.1328 1.0510 5 7 2.6993 3.3092 0.8484 6 6 2.8279 3.6709 -0.3875 7 6 3.3037 5.0190 -0.8643 8 7 4.7643 4.9961 -1.0187 9 6 5.2651 6.2969 -1.4827 10 6 6.7866 6.2343 -1.6307 11 1 7.0541 5.4064 -2.2873 12 6 7.4003 6.0300 -0.3085 13 7 7.8733 5.8745 0.7086 14 6 7.2950 7.5464 -2.2316 15 6 8.7756 7.4395 -2.4915 16 1 9.3015 6.5272 -2.2516 17 6 9.4588 8.5065 -3.0354 18 7 8.8185 9.6176 -3.3271 19 14 11.2942 8.3743 -3.3569 20 1 11.7737 7.0312 -2.9427 21 1 11.5584 8.5701 -4.8050 22 1 12.0095 9.4167 -2.5777 23 16 2.3603 2.3644 -1.3906 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0273 5.7806 -0.1352 30 1 2.8404 5.2494 -1.8236 31 1 5.0507 4.2552 -1.6409 32 1 4.8155 6.5366 -2.4463 33 1 5.0023 7.0670 -0.7575 34 1 6.7747 7.7422 -3.1692 35 1 7.1065 8.3625 -1.5342 36 1 9.2991 10.3683 -3.7094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562232259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:40 Heat of formation + Delta-G solvation = 71.635814 kcal Electronic energy + Delta-G solvation = -18166.505641 eV Core-core repulsion = 15198.468800 eV Total energy + Delta-G solvation = -2968.036842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48579 -37.58766 -35.70591 -34.75369 -33.62876 -32.08890 -30.50203 -28.03295 -26.38728 -24.73649 -23.41473 -22.63649 -21.79223 -20.00350 -19.50099 -17.24205 -16.49938 -16.14591 -15.79199 -15.02111 -14.92718 -14.76073 -14.40478 -14.27420 -13.75531 -13.28908 -13.06410 -12.76466 -12.63545 -12.32161 -12.08154 -12.02718 -11.73545 -11.68382 -11.27540 -11.09101 -10.74610 -10.65168 -10.54362 -10.35845 -10.28649 -10.00774 -9.90091 -9.57365 -9.25028 -8.55952 -8.47470 -6.12477 -4.15566 0.18611 0.64651 1.11064 2.36643 3.26880 3.35450 3.40058 3.61860 3.75719 3.84824 4.07505 4.27469 4.40256 4.46549 4.69778 4.75820 4.86736 4.89928 5.19236 5.25844 5.26611 5.33573 5.38703 5.47577 5.53850 5.64659 5.69157 5.89987 6.28055 6.41827 6.80773 7.21183 7.37963 7.49193 7.83033 8.19849 8.38657 8.58189 8.89423 9.50233 10.98439 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.002813 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.717414 B = 9951.532936 C =10041.526708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.017 4.017 4 N -0.260 5.260 5 N -0.242 5.242 6 C -0.004 4.004 7 C 0.139 3.861 8 N -0.686 5.686 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.252 3.748 13 N -0.474 5.474 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 S 0.160 5.840 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.343 0.657 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 -16.373 -1.569 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.296 4.296 4 N -0.098 5.098 5 N -0.079 5.079 6 C -0.284 4.284 7 C 0.006 3.994 8 N -0.318 5.318 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.065 4.065 13 N -0.150 5.150 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 S 0.404 5.596 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.087 -16.219 0.928 24.312 hybrid contribution 0.704 0.125 -1.417 1.587 sum -17.383 -16.094 -0.489 23.694 Atomic orbital electron populations 1.21790 0.93150 1.02900 1.02820 1.20167 0.96899 0.86583 1.04813 1.29279 1.04332 1.04154 0.91824 1.71478 1.12539 0.98940 1.26797 1.71431 1.12342 1.07018 1.17120 1.29183 1.03831 1.03034 0.92352 1.20396 0.89276 0.89025 1.00683 1.60460 1.08268 1.07154 1.55935 1.22140 0.94259 0.89988 0.99838 1.19204 0.91159 1.04195 0.86624 0.88260 1.28661 0.92139 0.91626 0.94119 1.80844 1.10530 1.10465 1.13177 1.19179 0.96582 0.88563 0.96387 1.21171 0.93235 1.00039 1.41964 0.92428 1.24955 0.98459 0.95240 0.95341 1.69943 1.36062 1.03774 1.43232 0.86533 0.85376 0.78310 0.77858 1.19673 1.20847 1.20939 1.83667 1.57872 1.05898 1.12159 0.91813 0.92281 0.91007 0.89211 0.88314 0.87350 0.92132 0.83904 0.92636 0.89851 0.94363 0.95430 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.04 -0.27 6.54 -27.89 -0.18 -0.46 16 3 C -0.02 -0.17 6.78 -13.30 -0.09 -0.26 16 4 N -0.26 -3.59 11.66 32.58 0.38 -3.21 16 5 N -0.24 -3.59 11.66 32.58 0.38 -3.21 16 6 C 0.00 -0.05 7.04 -13.30 -0.09 -0.14 16 7 C 0.14 1.47 6.28 -4.97 -0.03 1.43 16 8 N -0.69 -8.61 6.19 -115.06 -0.71 -9.32 16 9 C 0.07 0.91 5.05 -3.82 -0.02 0.89 16 10 C 0.01 0.18 2.36 -93.40 -0.22 -0.04 16 11 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 12 C 0.25 5.29 13.66 -20.88 -0.29 5.01 16 13 N -0.47 -11.03 18.51 42.01 0.78 -10.25 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 15 C -0.53 -13.80 8.60 -34.44 -0.30 -14.10 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 S 0.16 1.38 23.04 -107.50 -2.48 -1.10 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.34 3.82 8.72 -39.29 -0.34 3.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -33.14 333.61 -6.93 -40.06 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.95 Total: -3.78 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.07 Total: -5.88 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 1.56 Total: -50.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.48 Total: -1.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.14 -6.93 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562232259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.700 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds