Wall clock time and date at job start Tue Mar 31 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 120.03346 * 2 1 4 4 F 1.35109 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.38663 * 120.00475 * 180.27576 * 3 2 1 6 6 F 1.35104 * 119.95995 * 179.76475 * 5 3 2 7 7 C 1.38411 * 120.07700 * 359.49258 * 5 3 2 8 8 C 1.38131 * 120.07508 * 0.25108 * 7 5 3 9 9 C 1.38834 * 120.03853 * 179.76982 * 2 1 3 10 10 N 1.39812 * 120.04127 * 359.95050 * 9 2 1 11 11 C 1.46500 * 120.00046 * 180.02562 * 10 9 2 12 12 C 1.52995 * 109.47343 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46963 * 305.00409 * 12 11 10 14 14 C 1.47206 * 109.46951 * 64.99890 * 12 11 10 15 15 N 5.56205 * 73.10698 * 204.48751 * 2 1 3 16 16 C 1.52998 * 109.47290 * 184.99828 * 12 11 10 17 17 C 1.50700 * 109.47028 * 175.00044 * 16 12 11 18 18 H 1.08001 * 120.00259 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99940 * 180.02562 * 17 16 12 20 20 N 1.31508 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47430 * 59.99447 * 21 19 17 23 23 H 1.48502 * 109.47305 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46939 * 299.99438 * 21 19 17 25 25 H 1.08999 * 109.47283 * 270.22924 * 1 2 3 26 26 H 1.09003 * 109.47575 * 30.23663 * 1 2 3 27 27 H 1.09005 * 109.46746 * 150.23627 * 1 2 3 28 28 H 1.08001 * 119.96053 * 180.23170 * 7 5 3 29 29 H 1.07999 * 120.00411 * 180.02562 * 8 7 5 30 30 H 0.96995 * 119.99996 * 0.02770 * 10 9 2 31 31 H 1.09000 * 109.47305 * 300.00487 * 11 10 9 32 32 H 1.09002 * 109.46982 * 59.99693 * 11 10 9 33 33 H 1.08995 * 109.47527 * 295.00078 * 16 12 11 34 34 H 1.08999 * 109.46912 * 55.00501 * 16 12 11 35 35 H 0.96999 * 120.00920 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1976 0.0000 4 9 1.5244 2.3680 0.0005 5 6 3.5860 1.1969 -0.0058 6 9 4.2613 2.3671 -0.0106 7 6 4.2791 -0.0012 -0.0009 8 6 3.5910 -1.1989 0.0044 9 6 2.2020 -1.2019 0.0048 10 7 1.5046 -2.4136 0.0107 11 6 2.2389 -3.6813 0.0164 12 6 1.2463 -4.8456 0.0216 13 1 0.5620 -4.7359 0.8628 14 6 0.4817 -4.8441 -1.2363 15 7 -0.1092 -4.8433 -2.2060 16 6 2.0090 -6.1654 0.1531 17 6 1.0277 -7.3019 0.2817 18 1 -0.0337 -7.1028 0.2710 19 6 1.4850 -8.5959 0.4139 20 7 2.7775 -8.8384 0.4273 21 14 0.2687 -10.0048 0.5725 22 1 -0.5953 -10.0511 -0.6344 23 1 1.0089 -11.2858 0.7003 24 1 -0.5745 -9.7975 1.7772 25 1 -0.3634 0.0041 1.0276 26 1 -0.3634 0.8879 -0.5175 27 1 -0.3633 -0.8922 -0.5102 28 1 5.3591 0.0005 -0.0017 29 1 4.1330 -2.1331 0.0086 30 1 0.5347 -2.4150 0.0111 31 1 2.8654 -3.7424 -0.8735 32 1 2.8660 -3.7340 0.9064 33 1 2.6273 -6.3176 -0.7315 34 1 2.6437 -6.1315 1.0386 35 1 3.0993 -9.7488 0.5200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569353278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:12 Heat of formation + Delta-G solvation = -54.390000 kcal Electronic energy + Delta-G solvation = -20577.366059 eV Core-core repulsion = 17017.731191 eV Total energy + Delta-G solvation = -3559.634869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.41964 -48.47334 -39.74230 -37.28275 -35.13180 -33.76892 -32.86844 -31.69280 -29.00677 -27.39074 -26.44064 -24.08684 -22.25699 -21.81129 -21.66038 -18.30777 -17.57383 -17.11149 -16.90286 -16.52024 -16.33371 -15.85122 -15.00413 -14.93496 -14.54767 -14.46191 -14.17694 -13.71709 -13.64304 -13.21991 -13.11691 -12.88639 -12.72992 -12.42583 -12.19586 -12.00516 -11.78145 -11.53330 -11.28888 -11.18135 -10.88739 -10.70418 -10.48980 -9.97019 -9.78579 -9.41942 -8.90927 -8.57072 -7.51418 -6.21534 -4.25998 0.91200 1.11359 3.16130 3.23167 3.28480 3.31832 3.35870 3.38131 3.44803 3.87629 4.30711 4.35332 4.49732 4.52805 4.70345 4.88758 5.11611 5.16871 5.17976 5.36040 5.40659 5.44216 5.60158 5.77470 5.79774 5.91400 6.00226 6.04664 6.07462 6.23021 6.62285 7.07519 7.24687 7.33389 7.50974 7.71843 8.07121 8.19786 8.77624 9.40503 10.89094 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.003288 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.833909 B = 8512.837761 C = 9055.007943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.179 4.179 3 C 0.113 3.887 4 F -0.130 7.130 5 C -0.002 4.002 6 F -0.140 7.140 7 C -0.078 4.078 8 C -0.177 4.177 9 C 0.244 3.756 10 N -0.736 5.736 11 C 0.126 3.874 12 C -0.003 4.003 13 H 0.109 0.891 14 C 0.235 3.765 15 N -0.463 5.463 16 C 0.035 3.965 17 C -0.533 4.533 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.402 0.598 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 16.773 2.360 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.092 3.908 4 F -0.109 7.109 5 C -0.024 4.024 6 F -0.119 7.119 7 C -0.097 4.097 8 C -0.200 4.200 9 C 0.138 3.862 10 N -0.364 5.364 11 C 0.001 3.999 12 C -0.025 4.025 13 H 0.127 0.873 14 C -0.082 4.082 15 N -0.139 5.139 16 C -0.004 4.004 17 C -0.571 4.571 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.239 0.761 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.988 16.501 0.907 16.555 hybrid contribution -0.726 -0.542 0.418 0.998 sum 0.262 15.959 1.325 16.016 Atomic orbital electron populations 1.20544 0.89777 1.03187 1.02759 1.19124 0.96944 0.89995 1.12391 1.17139 0.88044 0.81428 1.04155 1.91484 1.80106 1.45482 1.93814 1.17335 0.88038 0.82534 1.14508 1.91472 1.79793 1.45669 1.94933 1.20776 1.00715 0.89824 0.98412 1.20635 0.91855 0.98688 1.08779 1.17396 0.91136 0.85404 0.92310 1.45103 1.08708 1.02548 1.80078 1.21675 0.94677 0.80570 1.02970 1.19484 0.95757 0.98702 0.88514 0.87306 1.29085 0.93057 0.91552 0.94543 1.81045 1.10546 1.10239 1.12105 1.19154 0.95355 0.86817 0.99076 1.21044 0.92797 0.91464 1.51746 0.92524 1.24934 0.95191 0.98926 0.94722 1.69906 1.12560 1.21009 1.49242 0.86637 0.81157 0.81364 0.78839 1.20217 1.21090 1.19988 0.90772 0.91009 0.91325 0.83897 0.83911 0.76098 0.91099 0.89567 0.95253 0.93900 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.39 36.01 0.34 -0.69 16 2 C -0.18 -2.04 5.90 -104.37 -0.62 -2.66 16 3 C 0.11 1.40 7.24 -39.39 -0.29 1.12 16 4 F -0.13 -1.69 16.39 2.25 0.04 -1.66 16 5 C 0.00 -0.02 7.30 -39.36 -0.29 -0.31 16 6 F -0.14 -1.82 17.18 2.25 0.04 -1.78 16 7 C -0.08 -0.79 10.01 -39.56 -0.40 -1.19 16 8 C -0.18 -1.83 9.31 -39.37 -0.37 -2.20 16 9 C 0.24 2.75 6.63 -83.75 -0.56 2.20 16 10 N -0.74 -8.20 5.42 -58.62 -0.32 -8.52 16 11 C 0.13 1.51 4.28 -4.04 -0.02 1.50 16 12 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 13 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.23 4.26 13.45 -20.77 -0.28 3.98 16 15 N -0.46 -9.37 18.53 42.13 0.78 -8.59 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.22 8.60 -34.44 -0.30 -13.51 16 18 H 0.06 1.40 7.59 -52.49 -0.40 1.00 16 19 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -24.20 13.28 55.43 0.74 -23.47 16 21 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 28 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.14 1.28 6.73 -52.49 -0.35 0.92 16 30 H 0.40 4.29 6.21 -40.82 -0.25 4.04 16 31 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 32 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -28.71 315.49 -6.00 -34.71 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.82 Total: -0.98 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.19 Total: -9.82 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 1.20 Total: -40.58 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.71 -6.00 -34.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569353278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.681 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds