Wall clock time and date at job start Tue Mar 31 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50710 * 120.00211 * 2 1 4 4 N 1.46498 * 109.47276 * 124.69643 * 3 2 1 5 5 C 1.46498 * 120.00255 * 274.33553 * 4 3 2 6 6 C 1.50700 * 109.47030 * 269.99941 * 5 4 3 7 7 H 1.07994 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99819 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99922 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00273 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47409 * 89.99451 * 10 8 6 12 12 H 1.48502 * 109.47201 * 209.99768 * 10 8 6 13 13 H 1.48503 * 109.46970 * 329.99498 * 10 8 6 14 14 C 1.34784 * 119.99557 * 94.33522 * 4 3 2 15 15 O 1.21599 * 120.00255 * 355.26373 * 14 4 3 16 16 C 1.47402 * 119.99333 * 174.98759 * 14 4 3 17 17 C 1.37361 * 128.56297 * 83.89685 * 16 14 4 18 18 C 1.50704 * 126.82991 * 0.02562 * 17 16 14 19 19 O 1.33498 * 106.33805 * 179.85116 * 17 16 14 20 20 N 1.20654 * 113.15492 * 0.45419 * 19 17 16 21 21 C 1.30010 * 112.30329 * 359.71618 * 20 19 17 22 22 C 1.50702 * 127.33339 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.47294 * 272.34889 * 22 21 20 24 24 H 1.08000 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.00292 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00357 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46623 * 4.69436 * 3 2 1 28 28 H 1.08997 * 109.46631 * 244.69867 * 3 2 1 29 29 H 1.09004 * 109.46836 * 29.99844 * 5 4 3 30 30 H 1.09000 * 109.46985 * 149.99994 * 5 4 3 31 31 H 0.97000 * 120.00206 * 180.02562 * 9 8 6 32 32 H 1.08988 * 109.47258 * 89.99870 * 18 17 16 33 33 H 1.09006 * 109.46465 * 209.99957 * 18 17 16 34 34 H 1.08997 * 109.47004 * 329.99496 * 18 17 16 35 35 H 1.09005 * 109.47453 * 32.35284 * 22 21 20 36 36 H 1.09007 * 109.47230 * 152.35226 * 22 21 20 37 37 H 0.96696 * 114.00129 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9886 1.3350 1.1356 5 6 2.5210 1.7825 2.4498 6 6 2.7193 3.2713 2.5733 7 1 3.1501 3.8284 1.7545 8 6 2.3497 3.9223 3.7311 9 7 2.5223 5.2216 3.8387 10 14 1.6038 2.9588 5.1470 11 1 2.6850 2.4898 6.0505 12 1 0.6710 3.8325 5.9032 13 1 0.8624 1.7882 4.6129 14 6 4.2700 0.9505 0.9711 15 8 4.6368 0.4980 -0.0962 16 6 5.2280 1.0845 2.0834 17 6 5.4503 0.2235 3.1304 18 6 4.7499 -1.0858 3.3876 19 8 6.4129 0.7755 3.8726 20 7 6.7963 1.8349 3.4408 21 6 6.1773 2.1761 2.3495 22 6 6.3874 3.4243 1.5317 23 8 5.5568 4.4710 2.0382 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3582 2.1319 0.0841 28 1 2.6255 1.4001 -0.9291 29 1 1.4623 1.5467 2.5584 30 1 3.0883 1.2745 3.2297 31 1 2.2626 5.6796 4.6534 32 1 5.2938 -1.8917 2.8951 33 1 4.7143 -1.2741 4.4607 34 1 3.7348 -1.0385 2.9932 35 1 7.4326 3.7277 1.5937 36 1 6.1278 3.2255 0.4919 37 1 5.6401 5.3063 1.5582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584123384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:05 Heat of formation + Delta-G solvation = 9.180949 kcal Electronic energy + Delta-G solvation = -23111.760915 eV Core-core repulsion = 19665.970205 eV Total energy + Delta-G solvation = -3445.790710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.41276 -39.23321 -36.34077 -35.64995 -33.85612 -33.02227 -32.93399 -32.06508 -28.15058 -27.86913 -26.96981 -25.87361 -23.46472 -22.27518 -20.09870 -19.79660 -18.68096 -17.53650 -16.95916 -16.84446 -16.58230 -16.02266 -15.79046 -14.85297 -14.59215 -14.19988 -13.92309 -13.69270 -13.32880 -13.14683 -12.88468 -12.74020 -12.41142 -12.26621 -11.84154 -11.57541 -11.34575 -11.18362 -10.93668 -10.86609 -10.67477 -10.24484 -9.79415 -9.61685 -9.52113 -9.34388 -9.15379 -8.87555 -8.55551 -7.88990 -6.04842 -4.02668 1.75338 2.29920 2.46570 2.90624 3.23940 3.28793 3.31202 3.33137 3.89632 4.37743 4.40587 4.63861 5.08302 5.20385 5.23570 5.26591 5.38740 5.42623 5.48139 5.53214 5.59697 5.71522 5.83354 5.90426 6.05359 6.11695 6.21380 6.24553 6.41581 6.64904 6.79347 6.89851 7.25384 7.54915 7.98398 8.24557 8.48332 8.65738 8.68260 9.07567 9.54760 11.07953 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.010374 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.862176 B = 2698.365103 C = 3685.214750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.143 3.857 4 N -0.571 5.571 5 C 0.208 3.792 6 C -0.523 4.523 7 H 0.088 0.912 8 C 0.084 3.916 9 N -0.882 5.882 10 Si 0.855 3.145 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.599 3.401 15 O -0.557 6.557 16 C -0.200 4.200 17 C -0.010 4.010 18 C -0.073 4.073 19 O 0.097 5.903 20 N -0.345 5.345 21 C 0.073 3.927 22 C 0.157 3.843 23 O -0.520 6.520 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -9.189 -3.849 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C 0.088 3.912 6 C -0.561 4.561 7 H 0.106 0.894 8 C -0.119 4.119 9 N -0.519 5.519 10 Si 0.682 3.318 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.386 3.614 15 O -0.438 6.438 16 C -0.207 4.207 17 C -0.073 4.073 18 C -0.130 4.130 19 O 0.032 5.968 20 N -0.051 5.051 21 C -0.089 4.089 22 C 0.078 3.922 23 O -0.323 6.323 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.619 -9.129 -3.107 9.993 hybrid contribution -0.858 -0.036 0.168 0.875 sum 1.762 -9.165 -2.939 9.785 Atomic orbital electron populations 1.23816 0.95769 1.01744 1.01315 1.23369 0.96096 0.99194 0.99198 1.20516 0.92338 0.95089 0.89984 1.47869 1.08129 1.61808 1.12172 1.19886 0.95183 0.97236 0.78937 1.21249 1.41875 0.89754 1.03226 0.89368 1.24722 0.95144 0.94592 0.97480 1.69862 1.47114 1.07788 1.27180 0.87193 0.79870 0.80728 0.84012 1.20167 1.20995 1.19075 1.16897 0.81509 0.77434 0.85592 1.90725 1.78749 1.47044 1.27239 1.21705 1.02490 0.96723 0.99737 1.24369 0.93468 0.98403 0.91098 1.20367 0.99552 0.88928 1.04166 1.84461 1.42239 1.25838 1.44234 1.73493 1.21842 0.97943 1.11837 1.24132 0.94288 0.96837 0.93621 1.19987 0.94159 0.84170 0.93893 1.86994 1.64816 1.21662 1.58833 0.88272 0.88770 0.87684 0.89319 0.89603 0.94800 0.95885 0.92907 0.89219 0.89421 0.89204 0.92614 0.92000 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 29.02 0.42 -2.03 16 2 C -0.16 -2.38 9.85 -36.02 -0.35 -2.74 16 3 C 0.14 2.50 5.86 -5.19 -0.03 2.47 16 4 N -0.57 -11.58 2.44 -177.71 -0.43 -12.02 16 5 C 0.21 4.68 4.01 -5.19 -0.02 4.66 16 6 C -0.52 -13.75 9.65 -34.44 -0.33 -14.08 16 7 H 0.09 2.55 7.23 -52.49 -0.38 2.17 16 8 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 9 N -0.88 -25.76 13.96 55.43 0.77 -24.98 16 10 Si 0.85 20.54 27.47 -169.99 -4.67 15.87 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 14 C 0.60 12.45 7.45 -12.53 -0.09 12.36 16 15 O -0.56 -12.24 16.66 5.28 0.09 -12.15 16 16 C -0.20 -4.06 4.74 -102.89 -0.49 -4.55 16 17 C -0.01 -0.18 6.78 -34.63 -0.23 -0.42 16 18 C -0.07 -0.93 10.31 36.01 0.37 -0.56 16 19 O 0.10 1.82 11.06 18.64 0.21 2.02 16 20 N -0.35 -7.11 12.01 34.78 0.42 -6.69 16 21 C 0.07 1.53 7.22 -79.77 -0.58 0.95 16 22 C 0.16 2.89 7.65 36.01 0.28 3.17 16 23 O -0.52 -10.88 12.52 -35.23 -0.44 -11.32 16 24 H 0.10 1.26 7.84 -52.49 -0.41 0.84 16 25 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 27 H 0.09 1.54 7.75 -51.93 -0.40 1.13 16 28 H 0.09 1.49 7.36 -51.93 -0.38 1.11 16 29 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 30 H 0.02 0.53 5.82 -51.93 -0.30 0.23 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.09 0.93 8.14 -51.94 -0.42 0.51 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.38 6.01 9.12 45.56 0.42 6.42 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -33.16 327.53 -4.24 -37.40 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.96 Total: 5.48 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.16 Total: 1.45 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.76 Total: -43.69 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.15 Total: -21.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.16 -4.24 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584123384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.583 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds