Wall clock time and date at job start Tue Mar 31 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50710 * 120.00211 * 2 1 4 4 N 1.46498 * 109.47276 * 124.69643 * 3 2 1 5 5 C 1.46498 * 120.00255 * 274.33553 * 4 3 2 6 6 C 1.50700 * 109.47030 * 269.99941 * 5 4 3 7 7 H 1.07994 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99819 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99922 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00273 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47409 * 89.99451 * 10 8 6 12 12 H 1.48502 * 109.47201 * 209.99768 * 10 8 6 13 13 H 1.48503 * 109.46970 * 329.99498 * 10 8 6 14 14 C 1.34784 * 119.99557 * 94.33522 * 4 3 2 15 15 O 1.21599 * 120.00255 * 355.26373 * 14 4 3 16 16 C 1.47402 * 119.99333 * 174.98759 * 14 4 3 17 17 C 1.37361 * 128.56297 * 83.89685 * 16 14 4 18 18 C 1.50704 * 126.82991 * 0.02562 * 17 16 14 19 19 O 1.33498 * 106.33805 * 179.85116 * 17 16 14 20 20 N 1.20654 * 113.15492 * 0.45419 * 19 17 16 21 21 C 1.30010 * 112.30329 * 359.71618 * 20 19 17 22 22 C 1.50702 * 127.33339 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.47294 * 272.34889 * 22 21 20 24 24 H 1.08000 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.00292 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00357 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46623 * 4.69436 * 3 2 1 28 28 H 1.08997 * 109.46631 * 244.69867 * 3 2 1 29 29 H 1.09004 * 109.46836 * 29.99844 * 5 4 3 30 30 H 1.09000 * 109.46985 * 149.99994 * 5 4 3 31 31 H 0.97000 * 120.00206 * 180.02562 * 9 8 6 32 32 H 1.08988 * 109.47258 * 89.99870 * 18 17 16 33 33 H 1.09006 * 109.46465 * 209.99957 * 18 17 16 34 34 H 1.08997 * 109.47004 * 329.99496 * 18 17 16 35 35 H 1.09005 * 109.47453 * 32.35284 * 22 21 20 36 36 H 1.09007 * 109.47230 * 152.35226 * 22 21 20 37 37 H 0.96696 * 114.00129 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9886 1.3350 1.1356 5 6 2.5210 1.7825 2.4498 6 6 2.7193 3.2713 2.5733 7 1 3.1501 3.8284 1.7545 8 6 2.3497 3.9223 3.7311 9 7 2.5223 5.2216 3.8387 10 14 1.6038 2.9588 5.1470 11 1 2.6850 2.4898 6.0505 12 1 0.6710 3.8325 5.9032 13 1 0.8624 1.7882 4.6129 14 6 4.2700 0.9505 0.9711 15 8 4.6368 0.4980 -0.0962 16 6 5.2280 1.0845 2.0834 17 6 5.4503 0.2235 3.1304 18 6 4.7499 -1.0858 3.3876 19 8 6.4129 0.7755 3.8726 20 7 6.7963 1.8349 3.4408 21 6 6.1773 2.1761 2.3495 22 6 6.3874 3.4243 1.5317 23 8 5.5568 4.4710 2.0382 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3582 2.1319 0.0841 28 1 2.6255 1.4001 -0.9291 29 1 1.4623 1.5467 2.5584 30 1 3.0883 1.2745 3.2297 31 1 2.2626 5.6796 4.6534 32 1 5.2938 -1.8917 2.8951 33 1 4.7143 -1.2741 4.4607 34 1 3.7348 -1.0385 2.9932 35 1 7.4326 3.7277 1.5937 36 1 6.1278 3.2255 0.4919 37 1 5.6401 5.3063 1.5582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584123384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:05 Heat of formation + Delta-G solvation = -14.835871 kcal Electronic energy + Delta-G solvation = -23112.802362 eV Core-core repulsion = 19665.970205 eV Total energy + Delta-G solvation = -3446.832157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.91906 -40.82797 -37.89010 -37.21168 -35.30724 -34.66171 -34.37987 -33.74728 -29.96587 -29.12669 -28.47894 -27.28359 -25.07726 -24.06149 -21.51001 -21.09046 -20.13969 -19.06156 -18.92097 -18.48585 -18.13513 -17.57766 -17.28407 -16.41016 -15.97578 -15.90523 -15.42245 -15.20831 -14.83299 -14.43558 -14.22049 -14.12276 -14.00553 -13.61747 -13.55673 -13.01823 -12.86943 -12.78638 -12.57313 -12.33837 -12.26591 -11.95003 -11.60241 -11.28458 -11.13127 -10.94005 -10.66593 -10.34230 -10.28644 -9.54670 -8.14082 -6.15157 0.33858 0.77994 1.30116 1.31610 1.36236 1.37339 1.44228 1.94981 2.38734 2.40456 2.94191 3.19128 3.24855 3.61982 3.86214 3.97702 4.08550 4.12283 4.19200 4.28903 4.46135 4.51576 4.58859 4.67202 4.70916 4.75144 4.78242 4.85806 5.05357 5.07950 5.51628 5.54925 5.70755 5.89203 6.24245 6.51077 6.88014 6.92292 7.08227 7.18714 7.45187 9.01078 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.010374 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.862176 B = 2698.365103 C = 3685.214750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.572 5.572 5 C 0.220 3.780 6 C -0.512 4.512 7 H 0.051 0.949 8 C 0.028 3.972 9 N -0.926 5.926 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.234 1.234 14 C 0.603 3.397 15 O -0.575 6.575 16 C -0.240 4.240 17 C 0.009 3.991 18 C -0.076 4.076 19 O 0.100 5.900 20 N -0.364 5.364 21 C 0.050 3.950 22 C 0.157 3.843 23 O -0.553 6.553 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.258 0.742 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -11.821 -3.226 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.019 3.981 4 N -0.300 5.300 5 C 0.098 3.902 6 C -0.550 4.550 7 H 0.069 0.931 8 C -0.171 4.171 9 N -0.566 5.566 10 Si 0.735 3.265 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.157 1.157 14 C 0.390 3.610 15 O -0.456 6.456 16 C -0.247 4.247 17 C -0.055 4.055 18 C -0.132 4.132 19 O 0.036 5.964 20 N -0.070 5.070 21 C -0.111 4.111 22 C 0.078 3.922 23 O -0.359 6.359 24 H 0.120 0.880 25 H 0.140 0.860 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.376 -11.775 -2.516 12.120 hybrid contribution -0.465 0.792 -0.106 0.925 sum 0.911 -10.983 -2.622 11.328 Atomic orbital electron populations 1.24070 0.95016 1.03192 0.97763 1.23142 0.96640 0.97707 1.02383 1.20634 0.91979 0.96791 0.88731 1.47872 1.08559 1.61407 1.12153 1.19629 0.95795 0.94534 0.80213 1.21354 1.40187 0.91649 1.01850 0.93053 1.25475 0.96030 0.95370 1.00230 1.70024 1.49162 1.09630 1.27827 0.86280 0.79140 0.80389 0.80677 1.20557 1.21242 1.15690 1.16933 0.81558 0.77001 0.85474 1.90700 1.78965 1.47986 1.27972 1.21846 1.03644 0.97996 1.01200 1.25250 0.91866 0.99008 0.89368 1.20704 0.99172 0.86874 1.06491 1.84428 1.42422 1.25360 1.44144 1.73463 1.22652 0.98824 1.12085 1.24579 0.94724 0.97787 0.94057 1.20126 0.95225 0.83212 0.93592 1.86922 1.65914 1.23080 1.60000 0.87988 0.86044 0.87360 0.89735 0.90321 0.93504 0.95482 0.93294 0.86259 0.86613 0.89156 0.89944 0.91682 0.75993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 14.32 67.79 0.97 -2.69 16 2 C -0.18 -4.96 9.85 25.66 0.25 -4.70 16 3 C 0.14 4.79 5.86 85.64 0.50 5.29 16 4 N -0.57 -22.74 2.44 -834.41 -2.04 -24.78 16 5 C 0.22 9.55 4.01 85.63 0.34 9.90 16 6 C -0.51 -27.04 9.65 25.60 0.25 -26.80 16 7 H 0.05 3.06 7.23 -2.91 -0.02 3.04 16 8 C 0.03 1.54 5.47 84.65 0.46 2.00 16 9 N -0.93 -55.31 13.96 21.45 0.30 -55.01 16 10 Si 0.91 41.33 27.47 68.60 1.88 43.22 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.23 -9.33 6.54 99.48 0.65 -8.68 16 14 C 0.60 24.80 7.45 86.66 0.65 25.45 16 15 O -0.57 -25.11 16.66 -4.03 -0.07 -25.18 16 16 C -0.24 -9.61 4.74 -18.75 -0.09 -9.70 16 17 C 0.01 0.29 6.78 25.48 0.17 0.46 16 18 C -0.08 -1.66 10.31 71.24 0.73 -0.92 16 19 O 0.10 3.65 11.06 76.95 0.85 4.50 16 20 N -0.36 -14.90 12.01 -44.79 -0.54 -15.44 16 21 C 0.05 2.10 7.22 45.16 0.33 2.43 16 22 C 0.16 5.91 7.65 71.24 0.55 6.45 16 23 O -0.55 -24.01 12.52 -148.98 -1.87 -25.88 16 24 H 0.10 2.26 7.84 -2.91 -0.02 2.23 16 25 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.08 2.89 7.75 -2.39 -0.02 2.87 16 28 H 0.08 2.75 7.36 -2.39 -0.02 2.73 16 29 H 0.05 1.94 7.13 -2.39 -0.02 1.92 16 30 H 0.03 1.18 5.82 -2.39 -0.01 1.16 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 35 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.39 13.21 9.12 -74.06 -0.68 12.54 16 Total: -1.00 -72.29 327.53 4.01 -68.28 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.36 Total: 23.15 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.11 Total: 7.16 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -2.27 Total: -95.23 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.08 Total: -46.56 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.22 kcal Total: -72.29 4.01 -68.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584123384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.445 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds