Wall clock time and date at job start Tue Mar 31 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47347 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99536 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00199 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99824 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00283 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99792 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00121 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00023 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46932 * 90.00239 * 18 16 14 20 20 H 1.48502 * 109.47185 * 210.00234 * 18 16 14 21 21 H 1.48501 * 109.47155 * 330.00226 * 18 16 14 22 22 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 23 23 C 1.50706 * 127.02111 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 27 27 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 29 29 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 30 30 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 31 31 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 32 32 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 33 33 H 0.97008 * 120.00016 * 359.97438 * 13 11 10 34 34 H 0.97003 * 120.00381 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.47359 * 270.03118 * 23 22 2 36 36 H 1.09003 * 109.46910 * 30.02795 * 23 22 2 37 37 H 1.08995 * 109.46868 * 150.02195 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1083 -2.8649 -2.5880 12 8 6.4493 -2.4324 -3.5098 13 7 8.2153 -3.5929 -2.8343 14 6 8.5963 -3.8450 -4.1269 15 1 8.0091 -3.4607 -4.9477 16 6 9.7375 -4.5961 -4.3809 17 7 10.1024 -4.8382 -5.6198 18 14 10.7528 -5.2616 -2.9611 19 1 10.2525 -6.6076 -2.5830 20 1 12.1759 -5.3604 -3.3739 21 1 10.6372 -4.3458 -1.7979 22 6 2.2850 -1.0931 0.0005 23 6 1.8309 -2.5301 0.0017 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5142 -0.8898 26 1 -0.3634 -0.5135 0.8902 27 1 4.3626 2.7433 0.0008 28 1 5.3460 1.5568 0.8918 29 1 5.3473 1.5567 -0.8882 30 1 5.0597 -1.5169 -2.0070 31 1 7.4819 -2.0443 -0.6534 32 1 6.5035 -3.5313 -0.6532 33 1 8.7426 -3.9385 -2.0970 34 1 10.8993 -5.3622 -5.7972 35 1 1.7212 -2.8757 1.0296 36 1 0.8728 -2.6088 -0.5122 37 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:09 Heat of formation + Delta-G solvation = -68.431116 kcal Electronic energy + Delta-G solvation = -21290.469066 eV Core-core repulsion = 17841.312845 eV Total energy + Delta-G solvation = -3449.156222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.67244 -39.47538 -38.22777 -34.52504 -34.36356 -33.75290 -33.11942 -31.81855 -29.93415 -28.66368 -27.66226 -24.96130 -24.26880 -22.69143 -20.12695 -19.70567 -19.29697 -18.54504 -17.28030 -16.62612 -16.04342 -15.65680 -15.29200 -15.26162 -14.81771 -14.27651 -14.06683 -13.70685 -13.53868 -13.40885 -13.10111 -13.07905 -12.87661 -12.86145 -12.60651 -12.49217 -12.33310 -12.20079 -12.09737 -11.34722 -11.24521 -10.65908 -10.09953 -10.03504 -9.71743 -9.44849 -8.92989 -8.79553 -8.38091 -8.32439 -6.42466 -3.95167 1.51341 2.11488 2.61150 2.64861 2.98123 3.02870 3.11035 3.37511 3.53937 4.01978 4.32486 4.51911 4.72444 4.74909 4.96125 5.05534 5.12110 5.15705 5.19663 5.30661 5.38440 5.54046 5.56546 5.62191 5.65328 5.73812 5.77040 5.78036 5.84351 6.06951 6.35609 6.52063 7.00704 7.42141 7.70837 7.98332 8.31894 8.44189 8.79894 9.27874 9.61348 10.69676 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.003445 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.838750 B = 8124.769266 C = 8216.073650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 O -0.172 6.172 4 C 0.043 3.957 5 C -0.081 4.081 6 C -0.222 4.222 7 C 0.592 3.408 8 O -0.541 6.541 9 N -0.698 5.698 10 C 0.105 3.895 11 C 0.438 3.562 12 O -0.577 6.577 13 N -0.576 5.576 14 C -0.311 4.311 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.267 1.267 22 C -0.144 4.144 23 C -0.085 4.085 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.414 0.586 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.374 0.626 34 H 0.276 0.724 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 8.824 12.868 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 O -0.070 6.070 4 C -0.009 4.009 5 C -0.137 4.137 6 C -0.226 4.226 7 C 0.377 3.623 8 O -0.419 6.419 9 N -0.352 5.352 10 C -0.023 4.023 11 C 0.224 3.776 12 O -0.462 6.462 13 N -0.213 5.213 14 C -0.439 4.439 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.252 0.748 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.610 9.031 12.804 21.424 hybrid contribution 0.929 -0.691 0.561 1.286 sum -13.682 8.341 13.366 20.866 Atomic orbital electron populations 1.20287 0.84792 1.03914 1.03580 1.21938 0.93717 0.83237 1.07848 1.83653 1.15960 1.35189 1.72171 1.22453 0.83220 0.93324 1.01902 1.20466 0.91687 0.97007 1.04553 1.20933 0.93866 0.93179 1.14634 1.17240 0.82443 0.79029 0.83594 1.90781 1.63736 1.55920 1.31473 1.45720 1.26855 1.53300 1.09298 1.21024 0.87710 0.96676 0.96877 1.19610 0.83892 0.84564 0.89567 1.90547 1.54956 1.55321 1.45348 1.42119 1.23386 1.47305 1.08526 1.19444 1.09769 1.31792 0.82906 0.86072 1.25065 0.97005 0.97062 0.96729 1.69615 1.25322 1.38150 1.18198 0.86673 0.80879 0.80034 0.81922 1.19374 1.19964 1.19214 1.21037 0.90024 0.96503 1.06982 1.20200 1.01429 0.90142 1.02367 0.90563 0.89606 0.89745 0.89957 0.89058 0.88893 0.74767 0.89556 0.89593 0.79233 0.91359 0.91089 0.91170 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.93 36.01 0.36 -0.13 16 2 C -0.02 -0.22 7.28 -35.74 -0.26 -0.48 16 3 O -0.17 -2.17 10.52 7.65 0.08 -2.09 16 4 C 0.04 0.56 7.37 -34.96 -0.26 0.30 16 5 C -0.08 -0.80 10.18 36.01 0.37 -0.44 16 6 C -0.22 -3.29 6.07 -103.28 -0.63 -3.91 16 7 C 0.59 9.90 7.41 -12.54 -0.09 9.80 16 8 O -0.54 -10.48 17.11 5.27 0.09 -10.39 16 9 N -0.70 -11.70 5.52 -62.57 -0.35 -12.04 16 10 C 0.10 1.83 6.15 -5.19 -0.03 1.80 16 11 C 0.44 9.61 7.85 -10.99 -0.09 9.52 16 12 O -0.58 -14.61 15.24 5.55 0.08 -14.53 16 13 N -0.58 -13.32 5.09 -10.96 -0.06 -13.38 16 14 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 15 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 16 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 17 N -0.87 -24.87 13.96 55.50 0.77 -24.10 16 18 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 22 C -0.14 -1.87 6.37 -102.50 -0.65 -2.53 16 23 C -0.08 -0.92 10.15 36.01 0.37 -0.56 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.41 7.04 7.42 -40.82 -0.30 6.74 16 31 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 34 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -33.62 328.55 -5.03 -38.65 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.73 Total: 12.93 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.17 Total: 5.82 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.37 Total: -49.52 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.26 Total: -27.01 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.62 -5.03 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.781 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds