Wall clock time and date at job start Tue Mar 31 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47347 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99536 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00199 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99824 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00283 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99792 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00121 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00023 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46932 * 90.00239 * 18 16 14 20 20 H 1.48502 * 109.47185 * 210.00234 * 18 16 14 21 21 H 1.48501 * 109.47155 * 330.00226 * 18 16 14 22 22 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 23 23 C 1.50706 * 127.02111 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 26 26 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 27 27 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 29 29 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 30 30 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 31 31 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 32 32 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 33 33 H 0.97008 * 120.00016 * 359.97438 * 13 11 10 34 34 H 0.97003 * 120.00381 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.47359 * 270.03118 * 23 22 2 36 36 H 1.09003 * 109.46910 * 30.02795 * 23 22 2 37 37 H 1.08995 * 109.46868 * 150.02195 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1083 -2.8649 -2.5880 12 8 6.4493 -2.4324 -3.5098 13 7 8.2153 -3.5929 -2.8343 14 6 8.5963 -3.8450 -4.1269 15 1 8.0091 -3.4607 -4.9477 16 6 9.7375 -4.5961 -4.3809 17 7 10.1024 -4.8382 -5.6198 18 14 10.7528 -5.2616 -2.9611 19 1 10.2525 -6.6076 -2.5830 20 1 12.1759 -5.3604 -3.3739 21 1 10.6372 -4.3458 -1.7979 22 6 2.2850 -1.0931 0.0005 23 6 1.8309 -2.5301 0.0017 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5142 -0.8898 26 1 -0.3634 -0.5135 0.8902 27 1 4.3626 2.7433 0.0008 28 1 5.3460 1.5568 0.8918 29 1 5.3473 1.5567 -0.8882 30 1 5.0597 -1.5169 -2.0070 31 1 7.4819 -2.0443 -0.6534 32 1 6.5035 -3.5313 -0.6532 33 1 8.7426 -3.9385 -2.0970 34 1 10.8993 -5.3622 -5.7972 35 1 1.7212 -2.8757 1.0296 36 1 0.8728 -2.6088 -0.5122 37 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:08 Heat of formation + Delta-G solvation = -93.460416 kcal Electronic energy + Delta-G solvation = -21291.554418 eV Core-core repulsion = 17841.312845 eV Total energy + Delta-G solvation = -3450.241573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.61959 -40.98887 -39.92347 -36.32145 -35.40202 -35.22019 -34.06524 -33.83597 -30.63730 -29.92498 -28.85892 -26.54908 -25.36964 -23.89614 -21.51411 -21.28799 -20.65094 -20.17480 -18.51945 -17.69056 -17.45511 -17.01349 -16.84544 -16.72490 -16.40672 -15.56608 -15.43528 -14.91337 -14.62759 -14.43461 -14.41082 -14.23449 -14.02673 -13.88716 -13.74233 -13.58824 -13.48768 -13.32837 -13.03248 -12.97878 -12.45875 -12.23150 -12.01098 -11.59781 -11.39164 -10.70007 -10.46869 -10.37187 -10.28303 -9.27613 -8.46775 -6.09144 0.55383 1.14476 1.30208 1.32574 1.34295 1.43517 1.73885 1.76874 2.06815 2.19797 2.83375 3.09277 3.46827 3.66234 3.87935 3.96367 4.09464 4.30251 4.35165 4.37051 4.39327 4.53088 4.64681 4.67684 4.78269 4.84296 4.86542 4.96920 5.04537 5.12513 5.20484 5.46637 5.51699 5.86278 6.07313 6.34578 6.46794 6.76402 6.98607 7.27066 7.75831 8.69663 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.003445 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.838750 B = 8124.769266 C = 8216.073650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.014 4.014 3 O -0.176 6.176 4 C 0.042 3.958 5 C -0.082 4.082 6 C -0.257 4.257 7 C 0.601 3.399 8 O -0.569 6.569 9 N -0.698 5.698 10 C 0.116 3.884 11 C 0.445 3.555 12 O -0.614 6.614 13 N -0.576 5.576 14 C -0.333 4.333 15 H 0.063 0.937 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.959 3.041 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.232 1.232 22 C -0.169 4.169 23 C -0.082 4.082 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.412 0.588 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.392 0.608 34 H 0.282 0.718 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 9.076 15.461 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 O -0.073 6.073 4 C -0.009 4.009 5 C -0.138 4.138 6 C -0.261 4.261 7 C 0.388 3.612 8 O -0.449 6.449 9 N -0.351 5.351 10 C -0.012 4.012 11 C 0.233 3.767 12 O -0.500 6.500 13 N -0.216 5.216 14 C -0.462 4.462 15 H 0.081 0.919 16 C -0.207 4.207 17 N -0.565 5.565 18 Si 0.779 3.221 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.155 1.155 22 C -0.171 4.171 23 C -0.139 4.139 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.250 0.750 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.183 9.297 15.409 23.546 hybrid contribution 0.968 -0.689 -0.330 1.233 sum -14.215 8.609 15.080 22.440 Atomic orbital electron populations 1.20524 0.81568 1.05303 1.05139 1.22730 0.95389 0.82371 1.05745 1.83685 1.15892 1.35772 1.71998 1.22914 0.84056 0.93292 1.00679 1.20592 0.90808 0.97755 1.04615 1.21005 0.93928 0.94056 1.17153 1.17413 0.82565 0.78421 0.82783 1.90753 1.64727 1.57197 1.32237 1.45747 1.26674 1.53259 1.09433 1.20977 0.88683 0.98207 0.93292 1.20426 0.82614 0.82537 0.91153 1.90537 1.55895 1.56218 1.47376 1.41906 1.24186 1.48058 1.07405 1.19032 1.10320 1.33284 0.83527 0.91885 1.26067 0.97830 0.96554 1.00231 1.69776 1.26288 1.39161 1.21266 0.85447 0.78148 0.80084 0.78465 1.18081 1.19787 1.15508 1.21352 0.89480 0.97917 1.08373 1.20228 1.02062 0.88755 1.02814 0.89300 0.88046 0.87975 0.87596 0.88793 0.88852 0.74967 0.87254 0.87568 0.77155 0.90865 0.90553 0.88605 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.93 71.24 0.71 -0.06 16 2 C -0.01 -0.29 7.28 24.76 0.18 -0.11 16 3 O -0.18 -4.18 10.52 4.45 0.05 -4.13 16 4 C 0.04 1.07 7.37 25.26 0.19 1.25 16 5 C -0.08 -1.52 10.18 71.24 0.72 -0.79 16 6 C -0.26 -7.48 6.07 -18.99 -0.12 -7.60 16 7 C 0.60 19.74 7.41 86.65 0.64 20.39 16 8 O -0.57 -21.51 17.11 -4.06 -0.07 -21.58 16 9 N -0.70 -22.99 5.52 -470.13 -2.60 -25.58 16 10 C 0.12 3.85 6.15 85.63 0.53 4.37 16 11 C 0.45 19.47 7.85 87.66 0.69 20.16 16 12 O -0.61 -31.95 15.24 -3.05 -0.05 -31.99 16 13 N -0.58 -26.37 5.09 -306.99 -1.56 -27.93 16 14 C -0.33 -18.85 10.16 84.04 0.85 -17.99 16 15 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 16 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 17 N -0.93 -54.21 13.96 21.66 0.30 -53.91 16 18 Si 0.96 37.81 27.74 68.60 1.90 39.71 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 22 C -0.17 -4.24 6.37 -18.49 -0.12 -4.36 16 23 C -0.08 -1.70 10.15 71.24 0.72 -0.97 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.41 14.12 7.42 -92.71 -0.69 13.43 16 31 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.39 15.01 5.76 -92.70 -0.53 14.47 16 34 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.41 7.90 -2.39 -0.02 1.39 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.36 328.55 3.28 -73.08 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.16 Total: 37.96 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.47 Total: 14.38 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.86 Total: -107.42 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -0.07 Total: -57.71 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Total: -76.36 3.28 -73.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.382 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds