Wall clock time and date at job start Tue Mar 31 2020 01:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00590 * 3 2 1 6 6 H 1.48496 * 109.47076 * 60.00309 * 3 2 1 7 7 C 1.37877 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99715 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64049 * 56.86323 * 9 7 2 11 11 C 1.55160 * 110.71813 * 180.02562 * 9 7 2 12 12 C 1.54909 * 101.57866 * 154.04536 * 11 9 7 13 13 N 1.47425 * 104.83267 * 322.98913 * 12 11 9 14 14 C 1.34775 * 125.64587 * 204.09504 * 13 12 11 15 15 O 1.21591 * 119.99561 * 180.02562 * 14 13 12 16 16 N 1.34775 * 120.00344 * 0.02562 * 14 13 12 17 17 C 1.46502 * 120.00055 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47054 * 180.02562 * 17 16 14 19 19 C 1.34507 * 125.78834 * 89.71223 * 18 17 16 20 20 C 1.41386 * 106.84010 * 180.26118 * 19 18 17 21 21 C 1.34511 * 106.84141 * 0.02562 * 20 19 18 22 22 O 1.34304 * 125.78797 * 270.02402 * 18 17 16 23 23 C 1.47015 * 108.70210 * 24.35861 * 13 12 11 24 24 H 0.96998 * 120.00285 * 359.97438 * 1 2 3 25 25 H 0.96703 * 114.00171 * 303.14306 * 10 9 7 26 26 H 1.09000 * 111.00331 * 35.96885 * 11 9 7 27 27 H 1.08994 * 111.03832 * 272.13498 * 11 9 7 28 28 H 1.09000 * 110.36554 * 204.15501 * 12 11 9 29 29 H 1.08998 * 110.37184 * 81.83279 * 12 11 9 30 30 H 0.97001 * 119.99698 * 0.02562 * 16 14 13 31 31 H 1.09000 * 109.47474 * 60.00246 * 17 16 14 32 32 H 1.09004 * 109.47079 * 300.00224 * 17 16 14 33 33 H 1.08004 * 126.58507 * 0.26980 * 19 18 17 34 34 H 1.08000 * 126.57862 * 179.97438 * 20 19 18 35 35 H 1.08000 * 125.79502 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.88123 * 118.12913 * 23 13 12 37 37 H 1.09004 * 109.88324 * 239.29287 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3657 -2.5696 -1.1200 11 6 2.2334 -3.7002 -0.0005 12 6 1.3741 -4.8047 0.6636 13 7 0.5905 -4.1032 1.6968 14 6 0.0656 -4.6674 2.8025 15 8 -0.5662 -3.9892 3.5895 16 7 0.2408 -5.9832 3.0358 17 6 -0.3304 -6.5964 4.2375 18 6 0.0075 -8.0649 4.2610 19 6 1.1039 -8.6110 4.8168 20 6 1.0196 -10.0061 4.6037 21 6 -0.1231 -10.2291 3.9299 22 8 -0.7322 -9.0497 3.7255 23 6 0.4713 -2.6878 1.3179 24 1 -0.4850 0.8400 0.0004 25 1 -0.2689 -1.8414 -1.1660 26 1 3.1182 -3.4812 0.5971 27 1 2.5105 -3.9790 -1.0171 28 1 2.0139 -5.5599 1.1204 29 1 0.7106 -5.2621 -0.0704 30 1 0.7451 -6.5241 2.4081 31 1 -1.4133 -6.4725 4.2291 32 1 0.0836 -6.1144 5.1232 33 1 1.8966 -8.0848 5.3280 34 1 1.7356 -10.7500 4.9203 35 1 -0.4892 -11.1930 3.6087 36 1 -0.5776 -2.4305 1.1705 37 1 0.9038 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591890778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:32 Heat of formation + Delta-G solvation = -78.467413 kcal Electronic energy + Delta-G solvation = -21777.142387 eV Core-core repulsion = 18327.550959 eV Total energy + Delta-G solvation = -3449.591428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54301 -41.27529 -39.19494 -36.12262 -36.10142 -34.16352 -33.91542 -32.12303 -30.97212 -29.57137 -27.49713 -26.17045 -24.16090 -22.69355 -21.62822 -21.43391 -21.07867 -19.43511 -19.02913 -18.14425 -17.51257 -17.17213 -16.86231 -16.59715 -16.20343 -15.74779 -15.41959 -14.89989 -14.77615 -14.66398 -14.24810 -13.89363 -13.75328 -13.53865 -13.47498 -13.28393 -12.96333 -12.86864 -12.54640 -12.30667 -12.24709 -12.09379 -11.44190 -11.20117 -10.88468 -10.64192 -10.36891 -10.29482 -9.54471 -9.45169 -8.26591 -6.42518 0.57786 1.41161 1.44546 1.53695 1.55656 1.81990 2.04407 2.11556 2.38601 2.99958 3.06807 3.61487 3.80422 4.07339 4.11938 4.13756 4.16789 4.35157 4.38229 4.49357 4.58680 4.71224 4.88849 5.01426 5.03085 5.12737 5.13380 5.21949 5.30100 5.37173 5.48410 5.58019 5.76196 5.99095 6.11173 6.17349 6.64562 6.97872 7.29625 7.38937 7.47695 8.79928 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.003556 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.668020 B = 7871.415541 C = 8044.766167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.714 3.286 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.224 3.776 18 C -0.054 4.054 19 C -0.181 4.181 20 C -0.228 4.228 21 C -0.026 4.026 22 O -0.191 6.191 23 C 0.138 3.862 24 H 0.271 0.729 25 H 0.378 0.622 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.409 0.591 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.240 0.760 36 H 0.026 0.974 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -19.549 5.938 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.416 3.584 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.101 3.899 18 C -0.104 4.104 19 C -0.201 4.201 20 C -0.247 4.247 21 C -0.094 4.094 22 O -0.088 6.088 23 C 0.014 3.986 24 H 0.080 0.920 25 H 0.229 0.771 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.256 0.744 36 H 0.044 0.956 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.083 -19.474 6.306 20.700 hybrid contribution -0.008 1.488 0.029 1.488 sum 3.075 -17.986 6.334 19.315 Atomic orbital electron populations 1.69688 1.07174 1.28514 1.50397 1.25845 0.95814 1.02937 0.93068 0.85383 0.79143 0.78852 0.77515 1.18777 1.20318 1.21003 1.21890 0.94039 0.91283 1.52198 0.91250 1.19726 0.86370 0.93645 0.81022 1.86058 1.51448 1.53039 1.49368 1.22729 0.97100 0.93399 1.01580 1.22405 0.93807 0.95470 0.89792 1.47864 1.55911 1.11223 1.21965 1.15628 0.79630 0.82273 0.80903 1.90861 1.48502 1.63508 1.49332 1.45000 1.59910 1.06603 1.27149 1.19328 0.99331 0.83245 0.88025 1.22080 0.94302 0.89687 1.04304 1.22004 0.98839 0.95365 1.03919 1.22222 1.00661 0.96313 1.05479 1.24946 0.94177 0.88636 1.01642 1.84049 1.46307 1.16009 1.62406 1.22427 0.98912 0.78577 0.98686 0.91951 0.77089 0.89661 0.89095 0.88147 0.91271 0.75488 0.91106 0.88217 0.82097 0.80880 0.74397 0.95552 0.94862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.26 10.97 21.45 0.24 -50.02 16 2 C 0.02 1.25 5.28 84.65 0.45 1.70 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.56 -29.15 8.12 25.60 0.21 -28.95 16 8 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 9 C 0.23 11.33 0.86 -10.35 -0.01 11.32 16 10 O -0.59 -30.27 13.07 -148.98 -1.95 -32.22 16 11 C -0.11 -4.16 6.23 31.99 0.20 -3.96 16 12 C 0.11 3.51 6.56 86.85 0.57 4.08 16 13 N -0.63 -26.22 3.33 -829.75 -2.76 -28.98 16 14 C 0.71 28.93 8.49 179.06 1.52 30.45 16 15 O -0.64 -31.49 16.67 -4.00 -0.07 -31.55 16 16 N -0.73 -21.37 5.51 -482.28 -2.66 -24.02 16 17 C 0.22 5.73 6.20 85.63 0.53 6.26 16 18 C -0.05 -1.16 6.69 24.83 0.17 -0.99 16 19 C -0.18 -3.25 10.81 22.19 0.24 -3.01 16 20 C -0.23 -3.24 10.91 22.19 0.24 -3.00 16 21 C -0.03 -0.37 12.09 66.97 0.81 0.44 16 22 O -0.19 -4.04 10.65 -2.51 -0.03 -4.06 16 23 C 0.14 6.96 5.54 86.73 0.48 7.44 16 24 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.38 20.46 6.98 -74.06 -0.52 19.94 16 26 H 0.08 3.05 8.03 -2.39 -0.02 3.03 16 27 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.10 2.42 7.30 -2.39 -0.02 2.41 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.41 9.92 6.94 -92.71 -0.64 9.28 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.24 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.03 1.84 7.82 -2.39 -0.02 1.82 16 Total: -1.00 -68.62 316.78 0.15 -68.46 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.06 Total: 36.51 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 5.40 Total: 21.77 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -5.18 Total: -103.03 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -2.04 Total: -67.83 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -68.62 0.15 -68.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591890778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.005 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds