Wall clock time and date at job start Tue Mar 31 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48501 * 109.46817 * 269.99816 * 3 2 1 5 5 H 1.48495 * 109.47138 * 29.99686 * 3 2 1 6 6 H 1.48501 * 109.46836 * 149.99596 * 3 2 1 7 7 C 1.37882 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99967 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.63874 * 298.31424 * 9 7 2 11 11 C 1.55157 * 110.87097 * 175.06652 * 9 7 2 12 12 C 1.55133 * 101.48578 * 205.89947 * 11 9 7 13 13 N 1.47427 * 104.72081 * 37.29249 * 12 11 9 14 14 C 1.34777 * 125.64523 * 155.82127 * 13 12 11 15 15 O 1.21593 * 119.99923 * 179.69095 * 14 13 12 16 16 N 1.34777 * 120.00128 * 359.69225 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 C 1.34510 * 125.79134 * 89.71785 * 18 17 16 20 20 C 1.41383 * 106.83981 * 179.88526 * 19 18 17 21 21 C 1.34514 * 106.84524 * 0.37050 * 20 19 18 22 22 O 1.34309 * 125.78560 * 270.01576 * 18 17 16 23 23 C 1.47021 * 108.70502 * 335.55275 * 13 12 11 24 24 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 25 25 H 0.96697 * 114.00773 * 61.69240 * 10 9 7 26 26 H 1.09000 * 111.00405 * 324.13253 * 11 9 7 27 27 H 1.08999 * 111.00708 * 87.98931 * 11 9 7 28 28 H 1.09006 * 110.49306 * 278.45607 * 12 11 9 29 29 H 1.09000 * 110.34508 * 156.05554 * 12 11 9 30 30 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 31 31 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 32 32 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 33 33 H 1.07999 * 126.57943 * 0.02562 * 19 18 17 34 34 H 1.08003 * 126.57566 * 180.11893 * 20 19 18 35 35 H 1.07997 * 125.79484 * 179.74717 * 21 20 19 36 36 H 1.08998 * 109.88345 * 120.70261 * 23 13 12 37 37 H 1.08997 * 109.88642 * 241.71452 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1775 11 6 2.2256 -3.7001 -0.1235 12 6 1.3110 -4.7747 -0.7681 13 7 0.4620 -4.0263 -1.7128 14 6 -0.1444 -4.5407 -2.8010 15 8 -0.8290 -3.8279 -3.5094 16 7 0.0079 -5.8451 -3.1040 17 6 -0.6463 -6.4027 -4.2903 18 6 -0.3133 -7.8679 -4.4054 19 6 -1.0139 -8.8790 -3.8612 20 6 -0.3520 -10.0757 -4.2199 21 6 0.7183 -9.7239 -4.9549 22 8 0.7366 -8.3854 -5.0641 23 6 0.3812 -2.6274 -1.2677 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2287 -1.9339 1.2624 26 1 3.0655 -3.4561 -0.7739 27 1 2.5740 -4.0235 0.8574 28 1 0.6974 -5.2592 -0.0085 29 1 1.9109 -5.5131 -1.3002 30 1 0.5543 -6.4136 -2.5391 31 1 -1.7259 -6.2814 -4.2006 32 1 -0.2944 -5.8792 -5.1792 33 1 -1.9114 -8.7933 -3.2665 34 1 -0.6466 -11.0795 -3.9515 35 1 1.4405 -10.4025 -5.3841 36 1 0.7626 -1.9678 -2.0471 37 1 -0.6530 -2.3705 -1.0383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591890779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:35 Heat of formation + Delta-G solvation = -78.374586 kcal Electronic energy + Delta-G solvation = -21790.925289 eV Core-core repulsion = 18341.337886 eV Total energy + Delta-G solvation = -3449.587403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54172 -41.27160 -39.19505 -36.11794 -36.07036 -34.22164 -33.91564 -32.10940 -30.96722 -29.53389 -27.49244 -26.16587 -24.16868 -22.69422 -21.63086 -21.44479 -21.07884 -19.42160 -18.98460 -18.14091 -17.52976 -17.16526 -16.85616 -16.57574 -16.25310 -15.72275 -15.39842 -14.93717 -14.75088 -14.64468 -14.36715 -13.76056 -13.74179 -13.54329 -13.48710 -13.33765 -12.95522 -12.83585 -12.53223 -12.33835 -12.28055 -12.09130 -11.43447 -11.16620 -10.88699 -10.65211 -10.36240 -10.29220 -9.54472 -9.44490 -8.25559 -6.41351 0.57773 1.41853 1.44005 1.53025 1.54688 1.81837 2.06173 2.10166 2.38855 3.01282 3.07119 3.61593 3.79386 4.04677 4.11507 4.13353 4.17263 4.36729 4.37184 4.49461 4.58266 4.72143 4.88758 5.01251 5.05427 5.12648 5.13266 5.22208 5.30175 5.36651 5.49624 5.57676 5.75134 6.00850 6.12772 6.17084 6.65326 6.98371 7.28344 7.35847 7.48260 8.80593 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.003586 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.299785 B = 7807.354891 C = 7986.783212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.233 3.767 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.713 3.287 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.224 3.776 18 C -0.053 4.053 19 C -0.183 4.183 20 C -0.228 4.228 21 C -0.026 4.026 22 O -0.190 6.190 23 C 0.142 3.858 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.409 0.591 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.241 0.759 36 H 0.030 0.970 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -19.666 -6.088 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.415 3.585 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.101 3.899 18 C -0.103 4.103 19 C -0.203 4.203 20 C -0.247 4.247 21 C -0.093 4.093 22 O -0.087 6.087 23 C 0.018 3.982 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.245 0.755 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.191 0.809 35 H 0.257 0.743 36 H 0.048 0.952 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.935 -19.412 -6.718 20.632 hybrid contribution -0.247 1.410 0.141 1.439 sum 1.689 -18.001 -6.577 19.239 Atomic orbital electron populations 1.69810 1.07094 1.28456 1.50052 1.25822 0.95811 1.02823 0.93108 0.85470 0.78846 0.78754 0.78055 1.20535 1.20718 1.18887 1.21835 0.93950 0.91369 1.52466 0.91451 1.19709 0.87062 0.93481 0.80441 1.86092 1.51676 1.56270 1.45366 1.22759 0.96884 0.93700 1.01480 1.22453 0.92428 0.94800 0.91775 1.47900 1.51619 1.11985 1.25580 1.15631 0.79985 0.82358 0.80480 1.90863 1.46699 1.60874 1.53778 1.45001 1.55852 1.07561 1.30260 1.19322 0.98139 0.84607 0.87853 1.22069 0.90884 0.95164 1.02188 1.22003 1.02890 0.91970 1.03398 1.22219 0.97798 1.00452 1.04241 1.24950 1.01691 0.80545 1.02128 1.84050 1.42365 1.22687 1.59559 1.22367 0.99249 0.78869 0.97707 0.92095 0.77574 0.89820 0.89042 0.90883 0.88411 0.75488 0.88379 0.90966 0.82242 0.80915 0.74327 0.95180 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 10.96 21.45 0.24 -49.99 16 2 C 0.03 1.34 5.28 84.66 0.45 1.79 16 3 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.56 -29.40 8.13 25.60 0.21 -29.19 16 8 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 9 C 0.23 11.32 0.85 -10.35 -0.01 11.31 16 10 O -0.59 -29.52 13.07 -148.98 -1.95 -31.47 16 11 C -0.11 -4.17 6.24 32.06 0.20 -3.97 16 12 C 0.11 3.50 6.58 86.93 0.57 4.07 16 13 N -0.63 -26.28 3.32 -829.29 -2.76 -29.03 16 14 C 0.71 28.99 8.49 179.05 1.52 30.51 16 15 O -0.64 -31.62 16.67 -4.01 -0.07 -31.69 16 16 N -0.73 -21.42 5.51 -482.30 -2.66 -24.08 16 17 C 0.22 5.75 6.20 85.63 0.53 6.28 16 18 C -0.05 -1.15 6.69 24.83 0.17 -0.98 16 19 C -0.18 -3.33 10.81 22.19 0.24 -3.09 16 20 C -0.23 -3.28 10.91 22.19 0.24 -3.04 16 21 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 22 O -0.19 -3.97 10.65 -2.62 -0.03 -4.00 16 23 C 0.14 7.16 5.23 86.73 0.45 7.61 16 24 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.38 19.78 7.45 -74.06 -0.55 19.23 16 26 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 27 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.10 2.40 7.29 -2.39 -0.02 2.38 16 30 H 0.41 9.94 6.94 -92.71 -0.64 9.30 16 31 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.24 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.03 1.68 7.81 -2.39 -0.02 1.67 16 37 H 0.03 1.67 7.92 -2.39 -0.02 1.66 16 Total: -1.00 -68.62 316.83 0.10 -68.52 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.09 Total: 35.62 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 5.38 Total: 21.75 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -5.18 Total: -103.10 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: -2.04 Total: -67.16 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.62 0.10 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591890779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds