Wall clock time and date at job start Tue Mar 31 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48494 * 109.47370 * 240.00394 * 3 2 1 5 5 H 1.48506 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46934 * 119.99937 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99727 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.64059 * 298.31134 * 9 7 2 11 11 C 1.55155 * 110.86773 * 175.06658 * 9 7 2 12 12 C 1.55129 * 101.48566 * 205.89788 * 11 9 7 13 13 N 1.47427 * 104.72250 * 37.29460 * 12 11 9 14 14 C 1.34778 * 125.64862 * 155.82268 * 13 12 11 15 15 O 1.21583 * 119.99865 * 179.69458 * 14 13 12 16 16 N 1.34773 * 119.99987 * 359.68676 * 14 13 12 17 17 C 1.46498 * 119.99733 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47062 * 180.02562 * 17 16 14 19 19 C 1.41388 * 126.57665 * 269.71036 * 18 17 16 20 20 C 1.34506 * 106.83998 * 180.26018 * 19 18 17 21 21 O 1.34305 * 108.42620 * 0.02562 * 20 19 18 22 22 C 1.34304 * 109.47208 * 359.97438 * 21 20 19 23 23 C 1.47028 * 108.70186 * 335.55513 * 13 12 11 24 24 H 0.97001 * 119.99671 * 359.97438 * 1 2 3 25 25 H 0.96704 * 114.00083 * 61.68970 * 10 9 7 26 26 H 1.09004 * 111.00739 * 324.13410 * 11 9 7 27 27 H 1.08997 * 111.00790 * 87.98989 * 11 9 7 28 28 H 1.09005 * 110.49477 * 278.45646 * 12 11 9 29 29 H 1.09003 * 110.35036 * 156.05882 * 12 11 9 30 30 H 0.97002 * 120.00311 * 0.02562 * 16 14 13 31 31 H 1.08998 * 109.47673 * 60.00463 * 17 16 14 32 32 H 1.09005 * 109.47380 * 300.00179 * 17 16 14 33 33 H 1.08000 * 126.57885 * 0.26682 * 19 18 17 34 34 H 1.08005 * 125.79272 * 179.97438 * 20 19 18 35 35 H 1.07998 * 125.79226 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.88187 * 120.70420 * 23 13 12 37 37 H 1.08995 * 109.88130 * 241.71393 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7000 -0.1259 12 6 1.3104 -4.7743 -0.7702 13 7 0.4606 -4.0256 -1.7140 14 6 -0.1467 -4.5395 -2.8019 15 8 -0.8317 -3.8264 -3.5094 16 7 0.0055 -5.8437 -3.1056 17 6 -0.6542 -6.4021 -4.2885 18 6 -0.3262 -7.8687 -4.4012 19 6 0.7659 -8.4368 -5.0966 20 6 0.6746 -9.7699 -4.9431 21 8 -0.4091 -10.0380 -4.1963 22 6 -1.0198 -8.8888 -3.8647 23 6 0.3802 -2.6268 -1.2682 24 1 -0.4850 0.8401 0.0004 25 1 -0.2277 -1.9343 1.2626 26 1 3.0649 -3.4557 -0.7768 27 1 2.5746 -4.0238 0.8546 28 1 0.6974 -5.2591 -0.0103 29 1 1.9098 -5.5126 -1.3031 30 1 0.5519 -6.4126 -2.5410 31 1 -0.3037 -5.8816 -5.1797 32 1 -1.7331 -6.2775 -4.1957 33 1 1.5274 -7.9028 -5.6455 34 1 1.3565 -10.5010 -5.3518 35 1 -1.9160 -8.7988 -3.2689 36 1 0.7610 -1.9669 -2.0476 37 1 -0.6538 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591931380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:10 Heat of formation + Delta-G solvation = -56.951145 kcal Electronic energy + Delta-G solvation = -21760.182967 eV Core-core repulsion = 18311.524554 eV Total energy + Delta-G solvation = -3448.658413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.79489 -39.60482 -37.45323 -35.17496 -34.23453 -32.65267 -32.20621 -30.26930 -29.64529 -27.80959 -26.37370 -24.59428 -22.54964 -21.82141 -20.66758 -19.68835 -19.43783 -18.04539 -17.22568 -16.95873 -16.24253 -15.70485 -15.31021 -14.97833 -14.87809 -14.42765 -13.94515 -13.91639 -13.11097 -13.02036 -12.87994 -12.83091 -12.43777 -12.15872 -11.84028 -11.63802 -11.37361 -11.01234 -10.80654 -10.66061 -10.49166 -10.16637 -10.13315 -9.57352 -9.29781 -8.84789 -8.80945 -8.65607 -8.30076 -7.73495 -6.25939 -4.34644 1.49500 2.23044 2.89318 3.24029 3.29936 3.31270 3.36449 3.75700 4.28738 4.52803 4.56479 4.63264 4.85843 5.01785 5.36750 5.39201 5.44207 5.65545 5.72431 5.80375 5.86337 5.98041 6.02888 6.12264 6.22572 6.52450 6.73530 6.75849 6.85634 6.91098 7.01338 7.28716 7.34367 7.66963 7.75280 8.05985 8.54921 8.68971 9.14424 9.31433 9.40131 10.81870 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036524 B = 0.003557 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.427485 B = 7869.794388 C = 8051.552175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.749 5.749 17 C 0.211 3.789 18 C -0.198 4.198 19 C -0.198 4.198 20 C -0.046 4.046 21 O -0.177 6.177 22 C -0.018 4.018 23 C 0.123 3.877 24 H 0.271 0.729 25 H 0.382 0.618 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.064 0.936 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -16.982 -6.457 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.407 5.407 17 C 0.087 3.913 18 C -0.200 4.200 19 C -0.217 4.217 20 C -0.113 4.113 21 O -0.073 6.073 22 C -0.087 4.087 23 C 0.001 3.999 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.219 0.781 35 H 0.221 0.779 36 H 0.082 0.918 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.660 -17.127 -6.874 18.467 hybrid contribution 0.430 1.290 -0.007 1.360 sum 1.091 -15.837 -6.881 17.302 Atomic orbital electron populations 1.69691 1.05980 1.28015 1.49503 1.25071 0.95052 0.99738 0.93386 0.86460 0.79536 0.82122 0.78772 1.20034 1.21082 1.20020 1.21455 0.93616 0.90122 1.52505 0.91618 1.19500 0.86561 0.91962 0.81214 1.86102 1.51822 1.56606 1.44857 1.22758 0.97359 0.95128 1.00130 1.22275 0.92772 0.95079 0.91865 1.47973 1.50906 1.12947 1.24912 1.15516 0.80413 0.81447 0.80953 1.90886 1.44878 1.59418 1.52482 1.45197 1.56115 1.09134 1.30219 1.19251 0.97344 0.86335 0.88400 1.20560 0.98575 0.96302 1.04529 1.21810 1.00947 0.94077 1.04889 1.24029 0.90982 0.97272 0.99054 1.84091 1.34260 1.33873 1.55028 1.24037 0.99960 0.82110 1.02556 1.22855 1.01445 0.77247 0.98329 0.91946 0.76771 0.90491 0.90640 0.92019 0.92683 0.77234 0.90945 0.91067 0.83262 0.78094 0.77855 0.91791 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 10.96 55.43 0.61 -23.34 16 2 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.13 8.13 -34.44 -0.28 -14.41 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16 10 O -0.59 -14.67 13.07 -35.23 -0.46 -15.13 16 11 C -0.12 -2.30 6.24 -24.46 -0.15 -2.45 16 12 C 0.10 1.82 6.58 -2.41 -0.02 1.80 16 13 N -0.63 -13.21 3.33 -176.10 -0.59 -13.79 16 14 C 0.71 14.66 8.49 -86.92 -0.74 13.93 16 15 O -0.60 -14.59 16.67 5.29 0.09 -14.51 16 16 N -0.75 -11.45 5.51 -66.41 -0.37 -11.82 16 17 C 0.21 2.77 6.19 -5.19 -0.03 2.74 16 18 C -0.20 -2.12 5.53 -104.74 -0.58 -2.70 16 19 C -0.20 -1.89 10.87 -39.70 -0.43 -2.32 16 20 C -0.05 -0.38 12.09 29.41 0.36 -0.02 16 21 O -0.18 -1.70 10.65 5.70 0.06 -1.64 16 22 C -0.02 -0.17 12.01 29.42 0.35 0.19 16 23 C 0.12 3.03 5.23 -3.06 -0.02 3.02 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.38 9.82 7.45 45.56 0.34 10.16 16 26 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.79 7.29 -51.93 -0.38 0.41 16 30 H 0.39 5.24 6.94 -40.82 -0.28 4.96 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.20 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.06 1.73 7.81 -51.93 -0.41 1.32 16 37 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -31.35 316.82 -6.67 -38.01 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -4.06 Total: 14.45 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.71 Total: 7.47 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.34 Total: -48.96 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.31 Total: -31.27 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.35 -6.67 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591931380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.937 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds