Wall clock time and date at job start Tue Mar 31 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48494 * 109.47370 * 240.00394 * 3 2 1 5 5 H 1.48506 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46934 * 119.99937 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99727 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.64059 * 298.31134 * 9 7 2 11 11 C 1.55155 * 110.86773 * 175.06658 * 9 7 2 12 12 C 1.55129 * 101.48566 * 205.89788 * 11 9 7 13 13 N 1.47427 * 104.72250 * 37.29460 * 12 11 9 14 14 C 1.34778 * 125.64862 * 155.82268 * 13 12 11 15 15 O 1.21583 * 119.99865 * 179.69458 * 14 13 12 16 16 N 1.34773 * 119.99987 * 359.68676 * 14 13 12 17 17 C 1.46498 * 119.99733 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47062 * 180.02562 * 17 16 14 19 19 C 1.41388 * 126.57665 * 269.71036 * 18 17 16 20 20 C 1.34506 * 106.83998 * 180.26018 * 19 18 17 21 21 O 1.34305 * 108.42620 * 0.02562 * 20 19 18 22 22 C 1.34304 * 109.47208 * 359.97438 * 21 20 19 23 23 C 1.47028 * 108.70186 * 335.55513 * 13 12 11 24 24 H 0.97001 * 119.99671 * 359.97438 * 1 2 3 25 25 H 0.96704 * 114.00083 * 61.68970 * 10 9 7 26 26 H 1.09004 * 111.00739 * 324.13410 * 11 9 7 27 27 H 1.08997 * 111.00790 * 87.98989 * 11 9 7 28 28 H 1.09005 * 110.49477 * 278.45646 * 12 11 9 29 29 H 1.09003 * 110.35036 * 156.05882 * 12 11 9 30 30 H 0.97002 * 120.00311 * 0.02562 * 16 14 13 31 31 H 1.08998 * 109.47673 * 60.00463 * 17 16 14 32 32 H 1.09005 * 109.47380 * 300.00179 * 17 16 14 33 33 H 1.08000 * 126.57885 * 0.26682 * 19 18 17 34 34 H 1.08005 * 125.79272 * 179.97438 * 20 19 18 35 35 H 1.07998 * 125.79226 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.88187 * 120.70420 * 23 13 12 37 37 H 1.08995 * 109.88130 * 241.71393 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7000 -0.1259 12 6 1.3104 -4.7743 -0.7702 13 7 0.4606 -4.0256 -1.7140 14 6 -0.1467 -4.5395 -2.8019 15 8 -0.8317 -3.8264 -3.5094 16 7 0.0055 -5.8437 -3.1056 17 6 -0.6542 -6.4021 -4.2885 18 6 -0.3262 -7.8687 -4.4012 19 6 0.7659 -8.4368 -5.0966 20 6 0.6746 -9.7699 -4.9431 21 8 -0.4091 -10.0380 -4.1963 22 6 -1.0198 -8.8888 -3.8647 23 6 0.3802 -2.6268 -1.2682 24 1 -0.4850 0.8401 0.0004 25 1 -0.2277 -1.9343 1.2626 26 1 3.0649 -3.4557 -0.7768 27 1 2.5746 -4.0238 0.8546 28 1 0.6974 -5.2591 -0.0103 29 1 1.9098 -5.5126 -1.3031 30 1 0.5519 -6.4126 -2.5410 31 1 -0.3037 -5.8816 -5.1797 32 1 -1.7331 -6.2775 -4.1957 33 1 1.5274 -7.9028 -5.6455 34 1 1.3565 -10.5010 -5.3518 35 1 -1.9160 -8.7988 -3.2689 36 1 0.7610 -1.9669 -2.0476 37 1 -0.6538 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591931380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:09 Heat of formation + Delta-G solvation = -80.719685 kcal Electronic energy + Delta-G solvation = -21761.213648 eV Core-core repulsion = 18311.524554 eV Total energy + Delta-G solvation = -3449.689094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.50198 -41.23875 -39.18417 -36.40762 -36.06655 -34.22403 -33.69465 -31.73103 -30.63438 -29.56019 -27.74410 -26.28881 -24.15618 -22.49112 -21.56766 -21.39684 -20.99611 -19.35847 -18.96816 -18.18874 -17.43983 -17.03644 -16.81726 -16.63991 -16.21450 -15.68346 -15.36665 -15.20865 -14.77076 -14.63455 -14.45902 -13.87244 -13.68033 -13.52288 -13.37329 -13.13864 -12.82970 -12.81268 -12.53192 -12.33315 -12.31229 -12.09087 -11.43934 -11.16328 -10.77489 -10.64231 -10.29603 -10.26133 -9.52087 -9.40542 -8.25429 -6.41511 0.77880 1.37457 1.43815 1.44113 1.52066 1.96077 2.12425 2.27591 2.38884 3.01286 3.15337 3.75139 3.80009 3.91318 4.05521 4.12870 4.18948 4.38253 4.57050 4.58477 4.66485 4.72516 4.73551 5.05716 5.11098 5.13177 5.24058 5.25914 5.35899 5.43723 5.50151 5.52123 5.75070 6.03621 6.15941 6.17835 6.65116 7.04507 7.28130 7.35637 7.54412 8.80525 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036524 B = 0.003557 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.427485 B = 7869.794388 C = 8051.552175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.636 5.636 14 C 0.710 3.290 15 O -0.644 6.644 16 N -0.725 5.725 17 C 0.213 3.787 18 C -0.215 4.215 19 C -0.218 4.218 20 C -0.034 4.034 21 O -0.184 6.184 22 C -0.011 4.011 23 C 0.142 3.858 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.407 0.593 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.155 0.845 34 H 0.238 0.762 35 H 0.225 0.775 36 H 0.028 0.972 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -19.234 -6.461 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.372 5.372 14 C 0.412 3.588 15 O -0.527 6.527 16 N -0.382 5.382 17 C 0.090 3.910 18 C -0.217 4.217 19 C -0.237 4.237 20 C -0.101 4.101 21 O -0.079 6.079 22 C -0.080 4.080 23 C 0.019 3.981 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.244 0.756 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.254 0.746 35 H 0.242 0.758 36 H 0.047 0.953 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.088 -19.458 -6.868 20.740 hybrid contribution -0.019 1.926 -0.047 1.927 sum 2.069 -17.531 -6.916 18.959 Atomic orbital electron populations 1.69805 1.07124 1.28518 1.49990 1.25825 0.95803 1.02840 0.93084 0.85524 0.78347 0.78380 0.78888 1.19808 1.21008 1.19207 1.21817 0.93961 0.91404 1.52593 0.91427 1.19705 0.87070 0.93491 0.80417 1.86091 1.51723 1.56249 1.45355 1.22757 0.96880 0.93716 1.01464 1.22435 0.92377 0.94769 0.91769 1.47910 1.51703 1.11912 1.25715 1.15739 0.79960 0.82726 0.80398 1.90849 1.46854 1.61047 1.53947 1.45048 1.55417 1.07121 1.30633 1.19250 0.96884 0.87972 0.86903 1.20366 1.00094 0.94840 1.06424 1.21980 1.01154 0.94936 1.05648 1.24694 0.90386 0.97506 0.97506 1.84125 1.34713 1.33833 1.55179 1.24407 1.00110 0.81677 1.01827 1.22339 0.99119 0.79034 0.97657 0.92098 0.77600 0.89832 0.89066 0.91006 0.88330 0.75613 0.92035 0.91415 0.82730 0.74571 0.75831 0.95328 0.95381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 10.96 21.45 0.24 -50.25 16 2 C 0.03 1.35 5.28 84.66 0.45 1.80 16 3 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.56 -29.57 8.13 25.60 0.21 -29.37 16 8 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 9 C 0.23 11.37 0.85 -10.35 -0.01 11.36 16 10 O -0.59 -29.66 13.07 -148.98 -1.95 -31.61 16 11 C -0.11 -4.18 6.24 32.06 0.20 -3.98 16 12 C 0.11 3.54 6.58 86.93 0.57 4.11 16 13 N -0.64 -26.49 3.33 -829.31 -2.76 -29.25 16 14 C 0.71 29.12 8.49 179.05 1.52 30.64 16 15 O -0.64 -32.41 16.67 -3.98 -0.07 -32.48 16 16 N -0.72 -21.20 5.51 -482.30 -2.66 -23.85 16 17 C 0.21 5.45 6.19 85.63 0.53 5.98 16 18 C -0.22 -4.21 5.53 -19.94 -0.11 -4.32 16 19 C -0.22 -3.66 10.87 22.19 0.24 -3.42 16 20 C -0.03 -0.45 12.09 66.97 0.81 0.36 16 21 O -0.18 -2.96 10.65 -2.51 -0.03 -2.99 16 22 C -0.01 -0.18 12.01 66.97 0.80 0.62 16 23 C 0.14 7.24 5.23 86.73 0.45 7.69 16 24 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.37 19.87 7.45 -74.05 -0.55 19.31 16 26 H 0.08 3.04 8.05 -2.38 -0.02 3.02 16 27 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.10 2.40 7.29 -2.39 -0.02 2.38 16 30 H 0.41 9.72 6.94 -92.71 -0.64 9.08 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.24 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.03 1.61 7.81 -2.39 -0.02 1.59 16 37 H 0.03 1.58 7.92 -2.39 -0.02 1.56 16 Total: -1.00 -69.79 316.82 0.38 -69.41 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.09 Total: 35.13 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.67 Total: 21.49 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.18 Total: -103.36 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -2.04 Total: -67.08 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.79 0.38 -69.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591931380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.314 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds