Wall clock time and date at job start Tue Mar 31 2020 01:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47131 * 271.58562 * 3 2 1 5 5 H 1.48496 * 109.47121 * 31.58829 * 3 2 1 6 6 H 1.48504 * 109.46847 * 151.58593 * 3 2 1 7 7 C 1.37872 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99907 * 353.60931 * 7 2 1 9 9 C 1.50704 * 120.00040 * 173.61425 * 7 2 1 10 10 C 1.53004 * 115.54997 * 90.15208 * 9 7 2 11 11 S 1.80997 * 109.47244 * 40.12991 * 10 9 7 12 12 C 1.76205 * 100.00110 * 184.49701 * 11 10 9 13 13 N 1.29968 * 125.41809 * 0.02562 * 12 11 10 14 14 N 1.40113 * 108.68772 * 179.97438 * 13 12 11 15 15 H 0.96997 * 126.34725 * 180.02562 * 14 13 12 16 16 C 1.36721 * 107.30469 * 0.02562 * 14 13 12 17 17 N 1.31044 * 126.55916 * 180.02562 * 16 14 13 18 18 N 1.37310 * 106.87641 * 359.76045 * 16 14 13 19 19 C 1.46501 * 126.01167 * 180.25784 * 18 16 14 20 20 C 1.53001 * 117.50052 * 8.89635 * 19 18 16 21 21 C 1.53004 * 117.49661 * 300.23801 * 19 18 16 22 22 C 1.52995 * 117.51795 * 235.84814 * 9 7 2 23 23 C 1.52993 * 60.00042 * 107.48073 * 22 9 7 24 24 H 0.96997 * 120.00110 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47126 * 160.13119 * 10 9 7 26 26 H 1.09004 * 109.46462 * 280.12825 * 10 9 7 27 27 H 0.96997 * 120.00618 * 359.97109 * 17 16 14 28 28 H 1.08998 * 115.55132 * 154.56882 * 19 18 16 29 29 H 1.09003 * 117.49520 * 0.02562 * 20 19 18 30 30 H 1.08994 * 117.49730 * 145.02085 * 20 19 18 31 31 H 1.08997 * 117.49126 * 214.98200 * 21 19 18 32 32 H 1.08996 * 117.49603 * 359.97438 * 21 19 18 33 33 H 1.09002 * 117.50042 * 214.97537 * 22 9 7 34 34 H 1.09002 * 117.50259 * 359.97438 * 22 9 7 35 35 H 1.09001 * 117.50290 * 252.51197 * 23 22 9 36 36 H 1.09005 * 117.51783 * 107.48108 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4631 2.0659 -1.3995 5 1 1.4638 2.6428 0.7334 6 1 3.5631 1.4308 0.6662 7 6 2.0046 -1.1940 -0.0005 8 1 1.4696 -2.1265 0.1032 9 6 3.5046 -1.1979 -0.1457 10 6 4.2944 -1.1272 1.1628 11 16 3.4911 -2.1649 2.4093 12 6 4.4986 -1.7987 3.8078 13 7 5.5130 -0.9864 3.8133 14 7 6.0575 -0.9568 5.1039 15 1 6.8218 -0.4345 5.3936 16 6 5.3119 -1.8006 5.8793 17 7 5.4932 -2.0564 7.1517 18 7 4.3331 -2.3242 5.0711 19 6 3.2968 -3.2759 5.4793 20 6 3.1624 -3.5763 6.9735 21 6 3.7562 -4.6268 6.0317 22 6 4.1021 -2.0223 -1.2877 23 6 4.0979 -0.4945 -1.3679 24 1 -0.4850 0.8400 -0.0004 25 1 5.3106 -1.4833 0.9936 26 1 4.3246 -0.0955 1.5135 27 1 6.2171 -1.6275 7.6343 28 1 2.3831 -3.2596 4.8852 29 1 3.8449 -3.0654 7.6529 30 1 2.1605 -3.7578 7.3622 31 1 3.1445 -5.4990 5.8011 32 1 4.8295 -4.8075 6.0909 33 1 5.0578 -2.5142 -1.1068 34 1 3.4103 -2.5624 -1.9341 35 1 3.4033 -0.0291 -2.0672 36 1 5.0507 0.0192 -1.2398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594889589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:37 Heat of formation + Delta-G solvation = 159.594296 kcal Electronic energy + Delta-G solvation = -19489.826675 eV Core-core repulsion = 16525.603999 eV Total energy + Delta-G solvation = -2964.222676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56370 -37.19890 -37.07134 -33.97415 -32.39477 -32.21084 -29.29652 -27.97860 -25.51427 -23.81048 -22.89427 -22.18909 -21.72967 -20.19840 -19.30777 -18.47329 -16.60437 -16.10698 -15.95721 -15.65805 -15.43305 -14.96038 -14.62181 -13.92697 -13.73830 -13.24798 -13.09312 -12.71612 -12.20615 -11.75091 -11.67923 -11.38626 -11.23523 -11.18107 -10.80689 -10.55361 -10.40532 -10.30415 -10.15686 -9.77169 -9.74098 -9.26477 -9.16224 -8.70284 -8.54659 -7.86586 -7.06098 -6.22839 -4.26479 1.47324 2.08704 2.12039 2.68262 2.83637 3.23122 3.33934 3.36542 3.70666 3.88554 4.33241 4.60891 4.77482 4.84648 4.92158 5.05002 5.07344 5.54595 5.62578 5.65991 5.74833 5.78051 5.97122 6.01149 6.05150 6.19072 6.30262 6.39001 6.60000 6.60636 6.83826 6.89697 7.02219 7.04563 7.58157 7.90465 8.33728 8.47824 8.79753 9.40118 10.87872 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.005364 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.906281 B = 5218.353162 C = 5389.798415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.089 3.911 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.085 0.915 9 C 0.005 3.995 10 C -0.075 4.075 11 S 0.078 5.922 12 C 0.257 3.743 13 N -0.314 5.314 14 N -0.583 5.583 15 H 0.443 0.557 16 C 0.585 3.415 17 N -0.801 5.801 18 N -0.491 5.491 19 C 0.080 3.920 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.175 4.175 23 C -0.189 4.189 24 H 0.267 0.733 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.339 0.661 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -4.640 8.347 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.103 0.897 9 C 0.002 3.998 10 C -0.224 4.224 11 S 0.308 5.692 12 C -0.127 4.127 13 N -0.141 5.141 14 N -0.321 5.321 15 H 0.290 0.710 16 C 0.216 3.784 17 N -0.456 5.456 18 N -0.204 5.204 19 C -0.023 4.023 20 C -0.216 4.216 21 C -0.218 4.218 22 C -0.212 4.212 23 C -0.229 4.229 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.815 -5.238 8.311 12.553 hybrid contribution 2.294 2.425 0.438 3.367 sum 10.109 -2.813 8.748 13.662 Atomic orbital electron populations 1.69881 1.06377 1.27403 1.48371 1.24916 0.94472 0.98901 0.93266 0.86958 0.80837 0.83602 0.78517 1.20262 1.21877 1.18175 1.20164 0.86227 0.94967 1.51603 0.89716 1.19088 0.95290 1.01385 0.84023 1.23634 0.99903 1.01722 0.97165 1.86569 1.32651 1.55813 0.94158 1.27306 0.98087 0.94715 0.92593 1.77195 1.11997 1.23354 1.01572 1.46784 1.32741 1.45683 1.06914 0.71008 1.20033 0.84808 0.85793 0.87720 1.69936 1.34014 1.41390 1.00300 1.44000 1.27926 1.42320 1.06120 1.21734 0.90859 0.90524 0.99205 1.23899 1.03724 1.01566 0.92361 1.23330 1.02092 0.92470 1.03888 1.22927 1.00938 0.92915 1.04399 1.22998 1.01301 0.95192 1.03385 0.92306 0.90778 0.89075 0.84329 0.83773 0.83551 0.88373 0.87854 0.88633 0.90660 0.89083 0.88955 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.09 2.37 5.46 -17.82 -0.10 2.28 16 3 Si 0.87 20.57 25.13 -169.99 -4.27 16.30 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -5.78 5.34 56.52 0.30 -5.48 16 7 C -0.49 -12.38 8.14 -34.44 -0.28 -12.66 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.00 0.10 1.12 -155.66 -0.17 -0.07 16 10 C -0.08 -1.46 5.11 37.16 0.19 -1.27 16 11 S 0.08 1.45 20.60 -107.50 -2.21 -0.77 16 12 C 0.26 4.54 8.02 -88.21 -0.71 3.84 16 13 N -0.31 -5.54 11.90 30.71 0.37 -5.18 16 14 N -0.58 -8.68 7.47 30.07 0.22 -8.46 16 15 H 0.44 5.09 8.96 -182.59 -1.64 3.46 16 16 C 0.58 9.08 8.94 -320.54 -2.87 6.22 16 17 N -0.80 -11.38 11.14 30.08 0.34 -11.05 16 18 N -0.49 -7.92 3.15 -110.73 -0.35 -8.27 16 19 C 0.08 1.11 6.59 -67.93 -0.45 0.66 16 20 C -0.18 -2.16 9.86 -26.69 -0.26 -2.43 16 21 C -0.18 -2.11 10.40 -26.69 -0.28 -2.39 16 22 C -0.17 -3.24 9.88 -26.74 -0.26 -3.50 16 23 C -0.19 -3.72 7.67 -26.74 -0.21 -3.92 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.07 1.31 7.95 -51.92 -0.41 0.89 16 26 H 0.09 1.89 6.27 -51.91 -0.33 1.57 16 27 H 0.34 4.14 8.92 -40.82 -0.36 3.78 16 28 H 0.14 1.91 7.93 -51.93 -0.41 1.50 16 29 H 0.15 2.02 5.33 -51.93 -0.28 1.74 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 35 H 0.09 1.91 7.24 -51.93 -0.38 1.54 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -28.48 311.90 -11.82 -40.31 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.00 Total: 10.11 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -5.39 Total: -13.25 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 1.35 Total: -57.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.27 Total: 16.30 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.21 Total: -0.77 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.48 -11.82 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594889589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.900 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds