Wall clock time and date at job start Tue Mar 31 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29415 * 125.69742 * 2 1 4 4 N 1.26392 * 116.47533 * 179.74562 * 3 2 1 5 5 C 1.29414 * 116.47943 * 0.54045 * 4 3 2 6 6 C 1.50697 * 125.70031 * 179.76536 * 5 4 3 7 7 N 1.46899 * 109.47137 * 89.69255 * 6 5 4 8 8 C 1.46905 * 110.99994 * 66.04681 * 7 6 5 9 9 C 1.46895 * 110.99952 * 190.00124 * 7 6 5 10 10 C 1.53001 * 109.47311 * 75.61702 * 9 7 6 11 11 H 1.08997 * 109.46998 * 304.88363 * 10 9 7 12 12 C 1.47195 * 109.47073 * 64.88619 * 10 9 7 13 13 N 6.95115 * 149.20709 * 60.80409 * 2 1 3 14 14 C 1.52998 * 109.47117 * 184.88438 * 10 9 7 15 15 C 1.50704 * 109.46926 * 174.99804 * 14 10 9 16 16 H 1.07992 * 120.00098 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99895 * 179.72657 * 15 14 10 18 18 N 1.31518 * 119.99759 * 0.27586 * 17 15 14 19 19 Si 1.86796 * 120.00051 * 180.27921 * 17 15 14 20 20 H 1.48502 * 109.47053 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47143 * 119.99662 * 19 17 15 22 22 H 1.48494 * 109.46899 * 239.99916 * 19 17 15 23 23 S 1.71220 * 125.69670 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47271 * 269.95256 * 1 2 3 25 25 H 1.08997 * 109.46808 * 29.95703 * 1 2 3 26 26 H 1.09004 * 109.46881 * 149.95442 * 1 2 3 27 27 H 1.08995 * 109.47067 * 329.69251 * 6 5 4 28 28 H 1.09002 * 109.47095 * 209.69005 * 6 5 4 29 29 H 1.09002 * 109.46703 * 187.77859 * 8 7 6 30 30 H 1.08997 * 109.46996 * 307.77138 * 8 7 6 31 31 H 1.08995 * 109.47325 * 67.77427 * 8 7 6 32 32 H 1.08998 * 109.47712 * 315.61362 * 9 7 6 33 33 H 1.09005 * 109.47397 * 195.61603 * 9 7 6 34 34 H 1.09001 * 109.47123 * 55.00427 * 14 10 9 35 35 H 1.09001 * 109.47491 * 294.99873 * 14 10 9 36 36 H 0.97000 * 119.99734 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5097 0.8484 0.0050 5 6 3.8937 -0.3874 -0.0013 6 6 5.3233 -0.8641 -0.0022 7 7 5.7885 -1.0196 1.3825 8 6 5.0608 -2.0983 2.0643 9 6 7.2382 -1.2520 1.4278 10 6 7.9741 0.0639 1.1673 11 1 7.6332 0.4903 0.2239 12 6 7.6942 1.0076 2.2618 13 7 7.4782 1.7359 3.1065 14 6 9.4794 -0.1995 1.0936 15 6 10.1940 1.0725 0.7158 16 1 9.6309 1.9781 0.5458 17 6 11.5674 1.0813 0.5933 18 7 12.2532 -0.0216 0.8007 19 14 12.4538 2.6597 0.1327 20 1 11.4620 3.7505 -0.0456 21 1 13.4049 3.0265 1.2126 22 1 13.1991 2.4568 -1.1355 23 16 2.5061 -1.3905 -0.0006 24 1 -0.3634 -0.0009 1.0276 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5146 27 1 5.9492 -0.1346 -0.5160 28 1 5.3862 -1.8231 -0.5164 29 1 5.3241 -2.1020 3.1221 30 1 3.9882 -1.9370 1.9575 31 1 5.3303 -3.0561 1.6194 32 1 7.5137 -1.9795 0.6644 33 1 7.5144 -1.6343 2.4105 34 1 9.6781 -0.9644 0.3429 35 1 9.8364 -0.5421 2.0648 36 1 13.2193 -0.0152 0.7149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595884092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:38 Heat of formation + Delta-G solvation = 86.448978 kcal Electronic energy + Delta-G solvation = -18898.180406 eV Core-core repulsion = 15930.785911 eV Total energy + Delta-G solvation = -2967.394495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41264 -38.30667 -35.79511 -33.74903 -33.29204 -31.75548 -30.21175 -27.54431 -27.11266 -25.23807 -24.14520 -21.87710 -21.69052 -19.75957 -19.45412 -16.96921 -16.59646 -16.09544 -15.69705 -15.27114 -14.77733 -14.66461 -14.32168 -13.63818 -13.52576 -13.31723 -13.14847 -12.85547 -12.74094 -12.42178 -12.01906 -11.94383 -11.87667 -11.55511 -11.21138 -11.04785 -10.70833 -10.61204 -10.50010 -10.30230 -10.19772 -9.82152 -9.77588 -9.53487 -9.21357 -8.46362 -8.41196 -6.09166 -4.11723 0.24625 0.69744 1.15691 2.43848 3.30105 3.38447 3.44262 3.69283 3.78439 3.89187 3.97092 4.30449 4.43172 4.64153 4.84349 4.91099 5.01318 5.11003 5.17289 5.26999 5.29441 5.36718 5.43114 5.52397 5.61563 5.70748 5.77627 5.91340 6.30890 6.45510 6.88630 6.93649 7.41214 7.52301 7.87103 8.24076 8.46024 8.64906 8.93606 9.54048 11.01776 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.003633 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.207422 B = 7704.846754 C = 8024.940495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 N -0.261 5.261 4 N -0.239 5.239 5 C 0.006 3.994 6 C 0.127 3.873 7 N -0.539 5.539 8 C 0.016 3.984 9 C 0.065 3.935 10 C 0.011 3.989 11 H 0.100 0.900 12 C 0.256 3.744 13 N -0.478 5.478 14 C 0.031 3.969 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 S 0.151 5.849 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 -10.180 -3.991 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.302 4.302 3 N -0.099 5.099 4 N -0.075 5.075 5 C -0.275 4.275 6 C -0.004 4.004 7 N -0.264 5.264 8 C -0.132 4.132 9 C -0.064 4.064 10 C -0.011 4.011 11 H 0.118 0.882 12 C -0.061 4.061 13 N -0.154 5.154 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 S 0.394 5.606 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.524 -8.341 -2.465 23.214 hybrid contribution 0.873 -0.037 -0.926 1.273 sum -20.651 -8.378 -3.390 22.542 Atomic orbital electron populations 1.20367 0.84081 1.04579 1.04288 1.29253 1.04235 0.91930 1.04752 1.71504 0.97114 1.26772 1.14513 1.71434 1.05937 1.17040 1.13137 1.29139 1.02451 0.92118 1.03746 1.20693 0.86766 1.01350 0.91610 1.61924 1.05695 1.45128 1.13638 1.22557 0.98550 0.91969 1.00164 1.22306 0.84073 0.96914 1.03063 1.19235 1.00366 0.89357 0.92166 0.88187 1.28768 0.90505 0.93190 0.93667 1.80981 1.11585 1.10787 1.12097 1.19183 0.84697 0.98191 0.98661 1.21191 0.91913 0.95710 1.47443 0.92359 1.24946 0.97636 0.96261 0.95119 1.69947 1.07091 1.26711 1.49385 0.86542 0.79795 0.83742 0.78086 1.19590 1.20982 1.20871 1.83596 0.98521 1.12508 1.65998 0.89184 0.88846 0.89800 0.86401 0.91614 0.90555 0.92115 0.94763 0.91962 0.89586 0.94409 0.95522 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.48 36.01 0.38 -0.06 16 2 C -0.02 -0.24 7.53 -13.29 -0.10 -0.34 16 3 N -0.26 -3.85 11.66 32.58 0.38 -3.47 16 4 N -0.24 -3.82 11.66 32.58 0.38 -3.44 16 5 C 0.01 0.07 6.31 -13.30 -0.08 -0.01 16 6 C 0.13 1.50 5.39 -4.98 -0.03 1.47 16 7 N -0.54 -7.09 4.38 -244.37 -1.07 -8.16 16 8 C 0.02 0.17 9.35 60.07 0.56 0.73 16 9 C 0.06 0.90 4.36 -3.83 -0.02 0.88 16 10 C 0.01 0.20 2.26 -93.41 -0.21 -0.01 16 11 H 0.10 1.74 6.66 -51.93 -0.35 1.40 16 12 C 0.26 5.52 13.67 -20.76 -0.28 5.24 16 13 N -0.48 -11.34 18.54 42.15 0.78 -10.56 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.52 -13.97 8.60 -34.44 -0.30 -14.27 16 16 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 S 0.15 1.37 21.38 -107.50 -2.30 -0.93 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.12 1.47 6.56 -51.93 -0.34 1.13 16 28 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 29 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.06 0.61 5.61 -51.93 -0.29 0.31 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.74 8.00 -51.93 -0.42 0.33 16 33 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -33.71 325.37 -6.23 -39.94 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -4.72 Total: -5.90 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.30 Total: -4.17 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 1.21 Total: -50.30 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.30 Total: -0.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.71 -6.23 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595884092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.390 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds