Wall clock time and date at job start Tue Mar 31 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29415 * 125.69742 * 2 1 4 4 N 1.26392 * 116.47533 * 179.74562 * 3 2 1 5 5 C 1.29414 * 116.47943 * 0.54045 * 4 3 2 6 6 C 1.50697 * 125.70031 * 179.76536 * 5 4 3 7 7 N 1.46899 * 109.47137 * 89.69255 * 6 5 4 8 8 C 1.46905 * 110.99994 * 66.04681 * 7 6 5 9 9 C 1.46895 * 110.99952 * 190.00124 * 7 6 5 10 10 C 1.53001 * 109.47311 * 75.61702 * 9 7 6 11 11 H 1.08997 * 109.46998 * 304.88363 * 10 9 7 12 12 C 1.47195 * 109.47073 * 64.88619 * 10 9 7 13 13 N 6.95115 * 149.20709 * 60.80409 * 2 1 3 14 14 C 1.52998 * 109.47117 * 184.88438 * 10 9 7 15 15 C 1.50704 * 109.46926 * 174.99804 * 14 10 9 16 16 H 1.07992 * 120.00098 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99895 * 179.72657 * 15 14 10 18 18 N 1.31518 * 119.99759 * 0.27586 * 17 15 14 19 19 Si 1.86796 * 120.00051 * 180.27921 * 17 15 14 20 20 H 1.48502 * 109.47053 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47143 * 119.99662 * 19 17 15 22 22 H 1.48494 * 109.46899 * 239.99916 * 19 17 15 23 23 S 1.71220 * 125.69670 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47271 * 269.95256 * 1 2 3 25 25 H 1.08997 * 109.46808 * 29.95703 * 1 2 3 26 26 H 1.09004 * 109.46881 * 149.95442 * 1 2 3 27 27 H 1.08995 * 109.47067 * 329.69251 * 6 5 4 28 28 H 1.09002 * 109.47095 * 209.69005 * 6 5 4 29 29 H 1.09002 * 109.46703 * 187.77859 * 8 7 6 30 30 H 1.08997 * 109.46996 * 307.77138 * 8 7 6 31 31 H 1.08995 * 109.47325 * 67.77427 * 8 7 6 32 32 H 1.08998 * 109.47712 * 315.61362 * 9 7 6 33 33 H 1.09005 * 109.47397 * 195.61603 * 9 7 6 34 34 H 1.09001 * 109.47123 * 55.00427 * 14 10 9 35 35 H 1.09001 * 109.47491 * 294.99873 * 14 10 9 36 36 H 0.97000 * 119.99734 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5097 0.8484 0.0050 5 6 3.8937 -0.3874 -0.0013 6 6 5.3233 -0.8641 -0.0022 7 7 5.7885 -1.0196 1.3825 8 6 5.0608 -2.0983 2.0643 9 6 7.2382 -1.2520 1.4278 10 6 7.9741 0.0639 1.1673 11 1 7.6332 0.4903 0.2239 12 6 7.6942 1.0076 2.2618 13 7 7.4782 1.7359 3.1065 14 6 9.4794 -0.1995 1.0936 15 6 10.1940 1.0725 0.7158 16 1 9.6309 1.9781 0.5458 17 6 11.5674 1.0813 0.5933 18 7 12.2532 -0.0216 0.8007 19 14 12.4538 2.6597 0.1327 20 1 11.4620 3.7505 -0.0456 21 1 13.4049 3.0265 1.2126 22 1 13.1991 2.4568 -1.1355 23 16 2.5061 -1.3905 -0.0006 24 1 -0.3634 -0.0009 1.0276 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5146 27 1 5.9492 -0.1346 -0.5160 28 1 5.3862 -1.8231 -0.5164 29 1 5.3241 -2.1020 3.1221 30 1 3.9882 -1.9370 1.9575 31 1 5.3303 -3.0561 1.6194 32 1 7.5137 -1.9795 0.6644 33 1 7.5144 -1.6343 2.4105 34 1 9.6781 -0.9644 0.3429 35 1 9.8364 -0.5421 2.0648 36 1 13.2193 -0.0152 0.7149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595884092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:38 Heat of formation + Delta-G solvation = 62.858814 kcal Electronic energy + Delta-G solvation = -18899.203352 eV Core-core repulsion = 15930.785911 eV Total energy + Delta-G solvation = -2968.417441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32068 -39.45586 -37.34293 -35.51740 -34.30182 -33.38972 -31.05155 -29.02491 -27.98832 -26.41292 -25.28545 -23.58242 -22.85458 -20.62153 -20.29570 -18.57097 -18.28016 -17.17017 -16.81969 -16.55573 -16.06383 -15.82320 -15.40198 -14.82456 -14.58221 -14.32490 -14.17632 -14.00185 -13.88407 -13.72228 -13.35112 -13.18709 -13.03144 -12.94665 -12.80358 -12.70011 -12.49682 -12.33671 -11.84253 -11.46288 -11.38777 -11.16000 -11.07849 -10.70039 -10.54020 -10.52545 -9.33229 -8.19263 -6.26129 -0.55516 -0.06243 0.33054 1.38067 1.41773 1.51914 1.52556 2.08099 2.15997 2.41853 2.83568 3.08690 3.16481 3.37042 3.58664 3.90791 4.07463 4.17166 4.33525 4.34783 4.49071 4.61549 4.65159 4.66589 4.74476 4.79644 4.86121 4.97136 4.99826 5.06793 5.48982 5.64314 5.80025 5.91658 6.00768 6.23510 6.84630 6.95282 7.42149 7.58874 8.91580 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.003633 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.207422 B = 7704.846754 C = 8024.940495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.027 4.027 3 N -0.310 5.310 4 N -0.291 5.291 5 C -0.019 4.019 6 C 0.126 3.874 7 N -0.563 5.563 8 C 0.017 3.983 9 C 0.077 3.923 10 C 0.018 3.982 11 H 0.111 0.889 12 C 0.267 3.733 13 N -0.522 5.522 14 C 0.040 3.960 15 C -0.538 4.538 16 H 0.048 0.952 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.271 1.271 23 S 0.235 5.765 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.004 0.996 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.848 -12.117 -4.832 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.306 4.306 3 N -0.149 5.149 4 N -0.128 5.128 5 C -0.299 4.299 6 C -0.005 4.005 7 N -0.288 5.288 8 C -0.131 4.131 9 C -0.052 4.052 10 C -0.003 4.003 11 H 0.129 0.871 12 C -0.049 4.049 13 N -0.199 5.199 14 C 0.001 3.999 15 C -0.577 4.577 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.770 3.230 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.196 1.196 23 S 0.479 5.521 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.060 -10.288 -3.313 25.467 hybrid contribution 1.244 0.504 -0.666 1.498 sum -21.816 -9.784 -3.979 24.238 Atomic orbital electron populations 1.20635 0.81181 1.06111 1.05628 1.29996 1.06133 0.92145 1.02351 1.71457 0.97267 1.28958 1.17174 1.71382 1.07065 1.19372 1.14981 1.29305 1.04201 0.92540 1.03900 1.20765 0.86233 1.02531 0.90998 1.61746 1.05154 1.46964 1.14964 1.22581 0.98356 0.92332 0.99799 1.22121 0.84571 0.94362 1.04102 1.19271 0.98257 0.91225 0.91594 0.87113 1.29457 0.89336 0.92652 0.93475 1.80970 1.12987 1.12287 1.13686 1.18995 0.87141 0.96512 0.97254 1.21575 0.92389 0.96860 1.46843 0.93387 1.25631 0.98564 0.98799 0.95430 1.70017 1.07396 1.28146 1.50468 0.85719 0.78635 0.80527 0.78151 1.19888 1.21083 1.19585 1.83161 0.95216 1.09608 1.64113 0.87739 0.88793 0.86795 0.87920 0.88188 0.91092 0.91766 0.92051 0.89086 0.89508 0.93898 0.97712 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.48 71.24 0.75 0.03 16 2 C -0.03 -0.53 7.53 88.47 0.67 0.13 16 3 N -0.31 -9.17 11.66 -50.84 -0.59 -9.76 16 4 N -0.29 -9.40 11.66 -50.85 -0.59 -9.99 16 5 C -0.02 -0.46 6.31 88.46 0.56 0.09 16 6 C 0.13 2.72 5.39 85.56 0.46 3.19 16 7 N -0.56 -13.78 4.38 -927.06 -4.06 -17.84 16 8 C 0.02 0.31 9.35 127.69 1.19 1.50 16 9 C 0.08 2.00 4.36 86.30 0.38 2.37 16 10 C 0.02 0.67 2.26 -12.60 -0.03 0.64 16 11 H 0.11 3.81 6.66 -2.39 -0.02 3.79 16 12 C 0.27 11.63 13.67 89.44 1.22 12.85 16 13 N -0.52 -25.22 18.54 20.00 0.37 -24.85 16 14 C 0.04 1.80 4.42 29.85 0.13 1.93 16 15 C -0.54 -28.83 8.60 25.60 0.22 -28.61 16 16 H 0.05 2.61 7.59 -2.91 -0.02 2.59 16 17 C 0.01 0.82 5.46 84.66 0.46 1.28 16 18 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 19 Si 0.94 44.12 29.54 68.60 2.03 46.14 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 S 0.24 3.61 21.38 -56.49 -1.21 2.40 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.10 2.49 6.56 -2.39 -0.02 2.47 16 28 H 0.10 1.42 8.12 -2.39 -0.02 1.40 16 29 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.06 1.10 5.61 -2.39 -0.01 1.09 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 33 H 0.09 2.26 7.94 -2.38 -0.02 2.24 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -74.82 325.37 3.33 -71.49 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.09 Total: -0.89 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.01 Total: -4.59 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -4.59 Total: -114.55 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.21 Total: 2.40 kcal Total: -74.82 3.33 -71.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595884092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.346 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds