Wall clock time and date at job start Tue Mar 31 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99543 * 2 1 4 4 C 1.38619 * 120.01985 * 0.25745 * 3 2 1 5 5 C 1.38790 * 119.87020 * 180.23414 * 4 3 2 6 6 N 1.39671 * 120.04204 * 179.74438 * 5 4 3 7 7 C 1.46496 * 120.00180 * 5.76383 * 6 5 4 8 8 C 1.53004 * 109.46877 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46740 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00066 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99697 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00155 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99930 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47059 * 89.99577 * 13 11 9 15 15 H 1.48496 * 109.47013 * 209.99688 * 13 11 9 16 16 H 1.48505 * 109.46937 * 330.00001 * 13 11 9 17 17 C 1.38975 * 119.90883 * 359.76562 * 5 4 3 18 18 N 1.48001 * 119.98249 * 180.02562 * 17 5 4 19 19 O 1.21803 * 120.00193 * 173.85859 * 18 17 5 20 20 O 1.21803 * 119.99986 * 353.85126 * 18 17 5 21 21 C 1.38108 * 120.03434 * 0.02562 * 17 5 4 22 22 C 1.38223 * 120.13078 * 359.97438 * 21 17 5 23 23 C 1.50698 * 119.95369 * 179.97438 * 22 21 17 24 24 H 1.09000 * 109.47317 * 299.99462 * 1 2 3 25 25 H 1.08996 * 109.47839 * 60.00254 * 1 2 3 26 26 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.05843 * 359.97438 * 4 3 2 28 28 H 0.96997 * 119.99390 * 185.75987 * 6 5 4 29 29 H 1.08996 * 109.46999 * 299.99470 * 7 6 5 30 30 H 1.08994 * 109.47417 * 59.99537 * 7 6 5 31 31 H 1.08996 * 109.46833 * 299.99522 * 8 7 6 32 32 H 1.09002 * 109.47352 * 59.99776 * 8 7 6 33 33 H 0.96997 * 119.99693 * 180.02562 * 12 11 9 34 34 H 1.08003 * 119.93751 * 180.02562 * 21 17 5 35 35 H 1.09003 * 109.47238 * 90.00547 * 23 22 21 36 36 H 1.09000 * 109.47222 * 210.00027 * 23 22 21 37 37 H 1.09003 * 109.47426 * 330.00681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3737 0.0054 5 6 1.9244 3.6087 0.0005 6 7 1.1675 4.7826 0.0005 7 6 -0.2898 4.7145 0.1331 8 6 -0.8713 6.1294 0.1032 9 6 -2.3704 6.0594 0.2403 10 1 -2.8595 5.1015 0.3384 11 6 -3.1176 7.2182 0.2393 12 7 -2.5220 8.3846 0.1193 13 14 -4.9760 7.1313 0.4085 14 1 -5.3454 7.1887 1.8457 15 1 -5.5922 8.2773 -0.3071 16 1 -5.4675 5.8589 -0.1786 17 6 3.3125 3.6758 -0.0049 18 7 3.9895 4.9919 -0.0096 19 8 5.2011 5.0540 0.0985 20 8 3.3349 6.0130 -0.1218 21 6 4.0607 2.5149 -0.0059 22 6 3.4316 1.2841 -0.0010 23 6 4.2519 0.0198 -0.0027 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2126 2.3186 0.0092 28 1 1.6069 5.6429 -0.0873 29 1 -0.7030 4.1348 -0.6923 30 1 -0.5467 4.2355 1.0778 31 1 -0.4581 6.7094 0.9284 32 1 -0.6144 6.6080 -0.8418 33 1 -3.0477 9.1997 0.1190 34 1 5.1393 2.5688 -0.0097 35 1 4.4543 -0.2833 1.0246 36 1 3.7007 -0.7702 -0.5127 37 1 5.1940 0.1986 -0.5211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596191383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:31 Heat of formation + Delta-G solvation = -24.638022 kcal Electronic energy + Delta-G solvation = -21654.487031 eV Core-core repulsion = 18207.229820 eV Total energy + Delta-G solvation = -3447.257210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96278 -40.49276 -38.18295 -36.65957 -35.75518 -33.47609 -32.04073 -30.97111 -29.49224 -28.01469 -26.68934 -25.55326 -24.19150 -22.64377 -21.71016 -20.77294 -18.60649 -18.49476 -18.38476 -17.25974 -16.71284 -16.29152 -16.09860 -15.60809 -14.78072 -14.50568 -14.47393 -14.39168 -13.70089 -13.69183 -13.25718 -12.55923 -12.44535 -12.29367 -12.07594 -11.70074 -11.60392 -11.29100 -11.16781 -11.14016 -10.92095 -10.76207 -10.65309 -10.60562 -9.76187 -9.74331 -9.40973 -8.88418 -8.52379 -7.58177 -6.16483 -4.21969 0.20086 1.22836 1.58433 1.76755 2.88829 3.22261 3.28415 3.30578 3.36226 3.49891 4.33089 4.37475 4.64252 4.73475 4.87104 4.95504 5.03692 5.16905 5.19900 5.29523 5.38314 5.53530 5.63885 5.70715 5.78580 5.92472 5.97894 6.05173 6.26788 6.46589 6.65333 6.89135 7.15772 7.47266 7.49476 7.76144 7.82275 8.05692 8.17408 8.83132 9.43231 10.94796 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.004579 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.558509 B = 6113.156787 C = 7720.179679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.225 3.775 4 C -0.297 4.297 5 C 0.321 3.679 6 N -0.697 5.697 7 C 0.110 3.890 8 C 0.013 3.987 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.888 5.888 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.168 4.168 18 N 0.061 4.939 19 O -0.180 6.180 20 O -0.205 6.205 21 C 0.024 3.976 22 C -0.185 4.185 23 C -0.092 4.092 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.421 0.579 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.153 0.847 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.370 -17.597 -0.424 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.215 6.215 3 C 0.177 3.823 4 C -0.321 4.321 5 C 0.201 3.799 6 N -0.330 5.330 7 C -0.012 4.012 8 C -0.025 4.025 9 C -0.566 4.566 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.526 5.526 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.260 4.260 18 N 0.566 4.434 19 O -0.392 6.392 20 O -0.403 6.403 21 C 0.004 3.996 22 C -0.189 4.189 23 C -0.149 4.149 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.168 0.832 28 H 0.271 0.729 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.836 -17.994 -0.429 20.051 hybrid contribution -1.082 0.956 0.074 1.446 sum 7.754 -17.038 -0.355 18.722 Atomic orbital electron populations 1.23233 0.77341 1.04405 1.02483 1.86080 1.22267 1.26320 1.86874 1.18809 0.91469 0.83945 0.88120 1.20678 1.01161 0.89382 1.20913 1.17370 0.87293 0.88897 0.86324 1.46806 1.08741 1.06922 1.70534 1.22035 0.76111 1.03144 0.99934 1.19303 0.96019 0.88588 0.98556 1.20948 0.90917 0.92960 1.51823 0.92353 1.25009 0.98969 0.95347 0.94849 1.69963 1.35885 0.97583 1.49126 0.86507 0.84963 0.77762 0.78255 1.20511 1.21039 1.19808 1.20331 0.90816 0.83050 1.31786 1.43336 1.00814 1.02550 0.96723 1.94464 0.96626 1.93836 1.54284 1.94229 1.64534 1.24962 1.56526 1.20358 1.00604 0.88378 0.90229 1.18792 0.90415 0.95283 1.14371 1.20466 0.98522 0.93627 1.02269 0.91815 0.91840 0.87761 0.83150 0.72942 0.92372 0.92339 0.95539 0.95514 0.92625 0.82938 0.91583 0.91139 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.18 9.53 -19.43 -0.19 -3.37 16 3 C 0.23 2.74 6.66 -39.24 -0.26 2.48 16 4 C -0.30 -4.06 8.30 -39.24 -0.33 -4.39 16 5 C 0.32 5.18 6.63 -83.81 -0.56 4.63 16 6 N -0.70 -12.76 5.61 -58.65 -0.33 -13.09 16 7 C 0.11 2.13 4.89 -4.04 -0.02 2.11 16 8 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 9 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 13 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C -0.17 -2.64 6.86 -79.73 -0.55 -3.19 16 18 N 0.06 1.09 4.45 34.07 0.15 1.24 16 19 O -0.18 -3.12 18.46 -29.46 -0.54 -3.66 16 20 O -0.21 -4.01 15.70 -29.46 -0.46 -4.47 16 21 C 0.02 0.30 9.20 -39.63 -0.36 -0.06 16 22 C -0.18 -2.12 5.90 -104.43 -0.62 -2.73 16 23 C -0.09 -0.78 9.79 36.00 0.35 -0.43 16 24 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 25 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.15 1.91 4.97 -52.49 -0.26 1.65 16 28 H 0.42 8.25 4.91 -41.23 -0.20 8.05 16 29 H 0.06 1.06 7.73 -51.93 -0.40 0.66 16 30 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 34 H 0.15 1.61 7.62 -52.48 -0.40 1.21 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 37 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -30.20 318.48 -7.28 -37.47 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.52 Total: 3.57 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.90 Total: -13.06 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.56 Total: -36.96 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.19 Total: -11.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.20 -7.28 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596191383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.834 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds