Wall clock time and date at job start Tue Mar 31 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99543 * 2 1 4 4 C 1.38619 * 120.01985 * 0.25745 * 3 2 1 5 5 C 1.38790 * 119.87020 * 180.23414 * 4 3 2 6 6 N 1.39671 * 120.04204 * 179.74438 * 5 4 3 7 7 C 1.46496 * 120.00180 * 5.76383 * 6 5 4 8 8 C 1.53004 * 109.46877 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46740 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00066 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99697 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00155 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99930 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47059 * 89.99577 * 13 11 9 15 15 H 1.48496 * 109.47013 * 209.99688 * 13 11 9 16 16 H 1.48505 * 109.46937 * 330.00001 * 13 11 9 17 17 C 1.38975 * 119.90883 * 359.76562 * 5 4 3 18 18 N 1.48001 * 119.98249 * 180.02562 * 17 5 4 19 19 O 1.21803 * 120.00193 * 173.85859 * 18 17 5 20 20 O 1.21803 * 119.99986 * 353.85126 * 18 17 5 21 21 C 1.38108 * 120.03434 * 0.02562 * 17 5 4 22 22 C 1.38223 * 120.13078 * 359.97438 * 21 17 5 23 23 C 1.50698 * 119.95369 * 179.97438 * 22 21 17 24 24 H 1.09000 * 109.47317 * 299.99462 * 1 2 3 25 25 H 1.08996 * 109.47839 * 60.00254 * 1 2 3 26 26 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.05843 * 359.97438 * 4 3 2 28 28 H 0.96997 * 119.99390 * 185.75987 * 6 5 4 29 29 H 1.08996 * 109.46999 * 299.99470 * 7 6 5 30 30 H 1.08994 * 109.47417 * 59.99537 * 7 6 5 31 31 H 1.08996 * 109.46833 * 299.99522 * 8 7 6 32 32 H 1.09002 * 109.47352 * 59.99776 * 8 7 6 33 33 H 0.96997 * 119.99693 * 180.02562 * 12 11 9 34 34 H 1.08003 * 119.93751 * 180.02562 * 21 17 5 35 35 H 1.09003 * 109.47238 * 90.00547 * 23 22 21 36 36 H 1.09000 * 109.47222 * 210.00027 * 23 22 21 37 37 H 1.09003 * 109.47426 * 330.00681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3737 0.0054 5 6 1.9244 3.6087 0.0005 6 7 1.1675 4.7826 0.0005 7 6 -0.2898 4.7145 0.1331 8 6 -0.8713 6.1294 0.1032 9 6 -2.3704 6.0594 0.2403 10 1 -2.8595 5.1015 0.3384 11 6 -3.1176 7.2182 0.2393 12 7 -2.5220 8.3846 0.1193 13 14 -4.9760 7.1313 0.4085 14 1 -5.3454 7.1887 1.8457 15 1 -5.5922 8.2773 -0.3071 16 1 -5.4675 5.8589 -0.1786 17 6 3.3125 3.6758 -0.0049 18 7 3.9895 4.9919 -0.0096 19 8 5.2011 5.0540 0.0985 20 8 3.3349 6.0130 -0.1218 21 6 4.0607 2.5149 -0.0059 22 6 3.4316 1.2841 -0.0010 23 6 4.2519 0.0198 -0.0027 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2126 2.3186 0.0092 28 1 1.6069 5.6429 -0.0873 29 1 -0.7030 4.1348 -0.6923 30 1 -0.5467 4.2355 1.0778 31 1 -0.4581 6.7094 0.9284 32 1 -0.6144 6.6080 -0.8418 33 1 -3.0477 9.1997 0.1190 34 1 5.1393 2.5688 -0.0097 35 1 4.4543 -0.2833 1.0246 36 1 3.7007 -0.7702 -0.5127 37 1 5.1940 0.1986 -0.5211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596191383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:30 Heat of formation + Delta-G solvation = -42.546368 kcal Electronic energy + Delta-G solvation = -21655.263595 eV Core-core repulsion = 18207.229820 eV Total energy + Delta-G solvation = -3448.033775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.26416 -41.50886 -39.26389 -37.92662 -37.12401 -35.27429 -33.41528 -32.10541 -31.05212 -28.76863 -27.79703 -27.10839 -25.52721 -24.05080 -22.86580 -22.27779 -19.86858 -19.65188 -19.55984 -18.59449 -18.48405 -17.57644 -16.92568 -16.82672 -16.41013 -16.00126 -15.82415 -15.57702 -14.62955 -14.56883 -14.34885 -14.19651 -13.69319 -13.43340 -13.11693 -12.94536 -12.76339 -12.61266 -12.55267 -12.50893 -12.34201 -12.25313 -12.19389 -12.04910 -11.64070 -11.42395 -11.01542 -10.61433 -9.89016 -8.80175 -8.25874 -6.39268 -1.05190 0.15755 0.39009 0.53069 1.40894 1.42409 1.53330 2.03283 2.17107 2.29586 2.42013 3.09080 3.28735 3.67895 3.73714 3.87235 4.23743 4.27539 4.33412 4.35797 4.37301 4.48537 4.61301 4.72423 4.77950 4.79186 4.93145 4.93682 5.24540 5.29210 5.34399 5.46821 5.49013 5.66112 5.86531 6.06228 6.12249 6.39623 6.64452 6.76671 7.31379 8.86766 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.004579 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.558509 B = 6113.156787 C = 7720.179679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.300 6.300 3 C 0.234 3.766 4 C -0.300 4.300 5 C 0.303 3.697 6 N -0.716 5.716 7 C 0.132 3.868 8 C 0.017 3.983 9 C -0.542 4.542 10 H 0.075 0.925 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.256 1.256 17 C -0.180 4.180 18 N 0.062 4.938 19 O -0.161 6.161 20 O -0.267 6.267 21 C 0.023 3.977 22 C -0.170 4.170 23 C -0.092 4.092 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.160 0.840 28 H 0.412 0.588 29 H 0.071 0.929 30 H 0.068 0.932 31 H -0.006 1.006 32 H -0.003 1.003 33 H 0.265 0.735 34 H 0.176 0.824 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.084 -21.347 -0.264 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.210 6.210 3 C 0.185 3.815 4 C -0.325 4.325 5 C 0.186 3.814 6 N -0.351 5.351 7 C 0.009 3.991 8 C -0.020 4.020 9 C -0.580 4.580 10 H 0.093 0.907 11 C -0.198 4.198 12 N -0.572 5.572 13 Si 0.796 3.204 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.180 1.180 17 C -0.273 4.273 18 N 0.561 4.439 19 O -0.381 6.381 20 O -0.450 6.450 21 C 0.004 3.996 22 C -0.174 4.174 23 C -0.149 4.149 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.177 0.823 28 H 0.260 0.740 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.193 0.807 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.485 -21.732 -0.279 23.332 hybrid contribution -0.861 1.865 0.031 2.054 sum 7.625 -19.867 -0.248 21.282 Atomic orbital electron populations 1.23548 0.75693 1.06515 1.02690 1.86111 1.23886 1.25009 1.86009 1.18954 0.91908 0.84100 0.86586 1.20810 1.01823 0.88950 1.20870 1.17620 0.87520 0.88827 0.87387 1.46616 1.08126 1.07528 1.72818 1.21612 0.77022 0.99527 1.00941 1.19129 0.95888 0.91377 0.95607 1.21444 0.91927 0.93679 1.50947 0.90729 1.26039 1.04465 0.94906 0.94419 1.70123 1.37987 0.98466 1.50616 0.85335 0.78357 0.78248 0.78419 1.19809 1.21146 1.17998 1.20645 0.90969 0.82602 1.33058 1.43658 1.00774 1.03165 0.96332 1.94406 0.96920 1.94033 1.52764 1.94245 1.64690 1.26238 1.59790 1.20672 1.01631 0.87498 0.89792 1.19226 0.90521 0.96052 1.11574 1.20587 0.98888 0.91867 1.03517 0.91615 0.91626 0.84809 0.82285 0.74043 0.91063 0.91364 0.98720 0.98508 0.92638 0.80655 0.90228 0.90518 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.30 -5.18 9.53 -92.45 -0.88 -6.06 16 3 C 0.23 5.02 6.66 22.49 0.15 5.17 16 4 C -0.30 -7.74 8.30 22.49 0.19 -7.56 16 5 C 0.30 9.79 6.63 38.20 0.25 10.04 16 6 N -0.72 -27.39 5.61 -339.48 -1.90 -29.30 16 7 C 0.13 5.20 4.89 86.38 0.42 5.63 16 8 C 0.02 0.90 5.09 29.85 0.15 1.05 16 9 C -0.54 -29.24 9.11 25.60 0.23 -29.00 16 10 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 11 C 0.00 0.01 5.46 84.66 0.46 0.47 16 12 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 13 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 C -0.18 -5.61 6.86 36.52 0.25 -5.36 16 18 N 0.06 2.26 4.45 -46.13 -0.21 2.06 16 19 O -0.16 -5.58 18.46 18.88 0.35 -5.23 16 20 O -0.27 -11.17 15.70 18.88 0.30 -10.88 16 21 C 0.02 0.53 9.20 22.24 0.20 0.74 16 22 C -0.17 -3.34 5.90 -19.74 -0.12 -3.46 16 23 C -0.09 -1.17 9.79 71.24 0.70 -0.47 16 24 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 25 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 26 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.16 3.74 4.97 -2.91 -0.01 3.73 16 28 H 0.41 17.47 4.91 -99.12 -0.49 16.98 16 29 H 0.07 2.58 7.73 -2.39 -0.02 2.56 16 30 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.18 3.17 7.62 -2.91 -0.02 3.14 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.93 7.52 -2.39 -0.02 0.91 16 37 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 Total: -1.00 -67.94 318.48 4.59 -63.35 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.62 Total: 18.99 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.01 Total: -21.51 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.82 Total: -83.18 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.24 Total: -22.17 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.94 4.59 -63.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596191383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.807 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds