Wall clock time and date at job start Tue Mar 31 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48499 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47198 * 300.00439 * 3 2 1 6 6 H 1.48508 * 109.46958 * 60.00282 * 3 2 1 7 7 C 1.37873 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 186.06584 * 7 2 1 9 9 C 1.50707 * 119.99924 * 6.34722 * 7 2 1 10 10 C 1.52999 * 115.54590 * 274.80154 * 9 7 2 11 11 S 1.81404 * 109.47182 * 294.76343 * 10 9 7 12 12 C 1.81398 * 102.99929 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47140 * 180.02562 * 12 11 10 14 14 N 1.31071 * 126.66167 * 90.02345 * 13 12 11 15 15 N 1.28839 * 107.98988 * 179.97438 * 14 13 12 16 16 N 1.28740 * 109.40101 * 359.97438 * 15 14 13 17 17 N 1.29027 * 108.80678 * 359.74740 * 16 15 14 18 18 C 1.46492 * 126.43945 * 180.24348 * 17 16 15 19 19 C 1.52998 * 117.50019 * 8.80309 * 18 17 16 20 20 C 1.53000 * 60.00238 * 252.50883 * 19 18 17 21 21 C 1.52992 * 117.50144 * 129.13240 * 9 7 2 22 22 C 1.52993 * 117.49829 * 60.47049 * 9 7 2 23 23 H 0.97002 * 120.00152 * 2.28383 * 1 2 3 24 24 H 1.08999 * 109.47512 * 54.76459 * 10 9 7 25 25 H 1.09001 * 109.47273 * 174.76588 * 10 9 7 26 26 H 1.09004 * 109.47093 * 300.00406 * 12 11 10 27 27 H 1.08995 * 109.47225 * 59.99978 * 12 11 10 28 28 H 1.09000 * 115.54729 * 154.50864 * 18 17 16 29 29 H 1.09000 * 117.49587 * 359.97438 * 19 18 17 30 30 H 1.08998 * 117.50019 * 145.01668 * 19 18 17 31 31 H 1.09003 * 117.49850 * 252.51618 * 20 19 18 32 32 H 1.08998 * 117.51691 * 107.47422 * 20 19 18 33 33 H 1.09009 * 117.49997 * 359.97438 * 21 9 7 34 34 H 1.08995 * 117.50336 * 145.01721 * 21 9 7 35 35 H 1.09003 * 117.49914 * 214.98096 * 22 9 7 36 36 H 1.09000 * 117.50387 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1967 0.0983 9 6 1.2580 -2.4951 -0.1454 10 6 0.6996 -3.0834 1.1519 11 16 2.0711 -3.5455 2.2457 12 6 1.2230 -4.2119 3.7042 13 6 2.2439 -4.6468 4.7239 14 7 2.7553 -3.9126 5.6817 15 7 3.5891 -4.6416 6.3399 16 7 3.6225 -5.8221 5.8272 17 7 2.8024 -5.8667 4.8320 18 6 2.5331 -7.0259 3.9778 19 6 3.1283 -8.3699 4.4024 20 6 3.7102 -7.6205 3.2020 21 6 1.7482 -3.4759 -1.2123 22 6 0.4436 -2.7037 -1.4237 23 1 -0.4850 0.8394 -0.0335 24 1 0.0738 -2.3414 1.6476 25 1 0.1037 -3.9670 0.9233 26 1 0.5837 -3.4418 4.1362 27 1 0.6142 -5.0672 3.4114 28 1 1.5554 -7.0377 3.4961 29 1 3.7206 -8.3914 5.3171 30 1 2.5421 -9.2663 4.2001 31 1 3.5067 -8.0240 2.2100 32 1 4.6849 -7.1490 3.3270 33 1 2.6105 -3.1800 -1.8099 34 1 1.6726 -4.5403 -0.9903 35 1 -0.4899 -3.2604 -1.3405 36 1 0.4474 -1.8998 -2.1597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596327407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:40 Heat of formation + Delta-G solvation = 168.912492 kcal Electronic energy + Delta-G solvation = -19100.569037 eV Core-core repulsion = 16136.750429 eV Total energy + Delta-G solvation = -2963.818608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.14678 -38.10289 -36.67395 -33.78121 -33.55314 -31.98599 -28.82306 -27.66861 -25.39562 -25.25047 -23.14589 -22.62968 -21.32472 -21.21512 -19.32326 -17.98158 -17.16088 -16.41469 -15.54146 -15.43468 -14.88143 -14.67812 -14.34913 -13.88719 -13.58099 -13.45200 -12.89947 -12.78672 -12.36022 -12.06985 -12.02391 -11.90572 -11.57018 -11.26022 -11.04043 -10.97232 -10.92767 -10.52245 -10.47959 -10.30326 -10.00696 -9.74686 -9.36921 -8.90777 -8.49944 -8.12394 -7.04868 -6.09862 -4.14789 0.98827 1.77315 1.94947 2.57774 3.16962 3.17858 3.29039 3.38193 3.43239 3.82866 3.98750 4.20339 4.31677 4.37709 4.40061 4.95589 5.14326 5.20141 5.27009 5.28342 5.34186 5.45886 5.53325 5.61784 5.74062 5.81807 6.07288 6.17040 6.27376 6.40318 6.61869 6.69758 6.97197 7.29624 7.39509 7.84807 8.32161 8.64204 8.87549 9.52547 10.99459 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.004684 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.763189 B = 5976.398707 C = 6748.672186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.487 4.487 8 H 0.063 0.937 9 C 0.054 3.946 10 C -0.029 4.029 11 S -0.203 6.203 12 C -0.035 4.035 13 C 0.219 3.781 14 N -0.289 5.289 15 N -0.077 5.077 16 N -0.101 5.101 17 N -0.275 5.275 18 C 0.051 3.949 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.205 4.205 22 C -0.146 4.146 23 H 0.260 0.740 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -16.126 4.369 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.081 0.919 9 C 0.052 3.948 10 C -0.177 4.177 11 S 0.023 5.977 12 C -0.185 4.185 13 C -0.058 4.058 14 N -0.139 5.139 15 N -0.070 5.070 16 N -0.087 5.087 17 N -0.076 5.076 18 C -0.053 4.053 19 C -0.195 4.195 20 C -0.194 4.194 21 C -0.243 4.243 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.116 0.884 28 H 0.176 0.824 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.073 -15.661 5.437 16.707 hybrid contribution -1.589 0.639 -0.619 1.821 sum 0.485 -15.022 4.818 15.783 Atomic orbital electron populations 1.70000 1.05890 1.26613 1.49267 1.24930 0.94783 0.98967 0.94264 0.86579 0.80496 0.83718 0.77581 1.19574 1.21045 1.20868 1.20395 0.92993 0.88348 1.50763 0.91909 1.18442 0.98270 0.94020 0.84050 1.23225 0.95233 1.00795 0.98445 1.87369 1.17061 1.80599 1.12643 1.21759 0.96107 1.04803 0.95874 1.25098 0.99728 0.82368 0.98632 1.75102 1.08704 1.24817 1.05270 1.78613 1.13675 0.95007 1.19732 1.78760 1.11468 1.18371 1.00053 1.47765 1.27262 1.11007 1.21583 1.22317 1.01132 0.83487 0.98327 1.23454 1.02779 0.92701 1.00606 1.23508 0.97148 1.01184 0.97587 1.23030 0.98478 0.95684 1.07062 1.22586 0.92244 1.01193 1.02553 0.93051 0.89240 0.93064 0.86313 0.88446 0.82396 0.86690 0.86458 0.86066 0.87378 0.90224 0.91428 0.91801 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.84 12.92 55.43 0.72 -23.12 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.49 -12.76 8.49 -34.44 -0.29 -13.05 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.05 1.24 1.33 -155.66 -0.21 1.03 16 10 C -0.03 -0.57 5.80 37.16 0.22 -0.36 16 11 S -0.20 -3.74 21.41 -107.50 -2.30 -6.04 16 12 C -0.03 -0.49 6.28 36.01 0.23 -0.27 16 13 C 0.22 3.39 7.39 -155.43 -1.15 2.24 16 14 N -0.29 -5.26 12.36 32.70 0.40 -4.86 16 15 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 16 N -0.10 -1.57 12.69 60.35 0.77 -0.80 16 17 N -0.27 -3.70 3.67 -51.81 -0.19 -3.89 16 18 C 0.05 0.46 6.63 -67.93 -0.45 0.01 16 19 C -0.16 -1.05 10.15 -26.73 -0.27 -1.32 16 20 C -0.16 -1.20 10.46 -26.73 -0.28 -1.48 16 21 C -0.20 -4.15 9.96 -26.70 -0.27 -4.41 16 22 C -0.15 -3.15 9.43 -26.70 -0.25 -3.40 16 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.09 1.98 8.14 -51.92 -0.42 1.56 16 25 H 0.05 0.89 8.09 -51.92 -0.42 0.47 16 26 H 0.12 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.10 1.03 7.34 -51.93 -0.38 0.65 16 28 H 0.16 1.04 7.41 -51.93 -0.38 0.65 16 29 H 0.11 0.90 7.85 -51.93 -0.41 0.49 16 30 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -30.38 328.76 -7.63 -38.01 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.94 Total: -0.51 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.82 Total: -19.15 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 2.51 Total: -33.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.30 Total: -6.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.38 -7.63 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596327407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.920 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds