Wall clock time and date at job start Tue Mar 31 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47163 * 2 1 4 4 N 1.30014 * 127.33833 * 270.18543 * 3 2 1 5 5 O 1.20665 * 112.30250 * 180.26747 * 4 3 2 6 6 C 1.33495 * 113.15328 * 359.71878 * 5 4 3 7 7 C 1.37356 * 106.34617 * 359.97438 * 6 5 4 8 8 C 1.47396 * 128.56613 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00092 * 185.54757 * 8 7 6 10 10 N 1.34774 * 119.99732 * 5.27419 * 8 7 6 11 11 C 1.47424 * 125.64735 * 175.49020 * 10 8 7 12 12 C 1.54912 * 104.83510 * 204.09157 * 11 10 8 13 13 C 1.55161 * 101.57572 * 322.98876 * 12 11 10 14 14 O 1.42898 * 110.72005 * 277.13546 * 13 12 11 15 15 C 1.50697 * 110.71985 * 154.04328 * 13 12 11 16 16 H 1.07998 * 119.99785 * 359.97438 * 15 13 12 17 17 C 1.37873 * 120.00183 * 179.97438 * 15 13 12 18 18 N 1.31514 * 119.99784 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00050 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47280 * 90.00341 * 19 17 15 21 21 H 1.48505 * 109.47108 * 210.00182 * 19 17 15 22 22 H 1.48498 * 109.47114 * 330.00193 * 19 17 15 23 23 C 1.47015 * 125.64928 * 355.17471 * 10 8 7 24 24 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46925 * 299.99744 * 1 2 3 26 26 H 1.08998 * 109.46788 * 59.99911 * 1 2 3 27 27 H 1.09005 * 109.47131 * 239.99758 * 2 1 3 28 28 H 1.09003 * 109.47239 * 120.00214 * 2 1 3 29 29 H 1.08000 * 126.82462 * 179.97438 * 6 5 4 30 30 H 1.09002 * 110.36624 * 322.92827 * 11 10 8 31 31 H 1.09001 * 110.37379 * 85.24672 * 11 10 8 32 32 H 1.08996 * 111.00576 * 81.05656 * 12 11 10 33 33 H 1.08997 * 111.00670 * 204.87938 * 12 11 10 34 34 H 0.96693 * 114.00469 * 179.97438 * 14 13 12 35 35 H 0.97003 * 119.99559 * 179.97438 * 18 17 15 36 36 H 1.08998 * 109.88513 * 298.39400 * 23 10 8 37 37 H 1.09007 * 109.88386 * 59.56588 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2920 2.1653 -1.0337 5 8 2.6864 3.2619 -0.7207 6 6 2.7517 3.4388 0.6009 7 6 2.3293 2.2621 1.1697 8 6 2.2099 1.9234 2.5993 9 8 1.9118 0.7927 2.9334 10 7 2.4366 2.8654 3.5361 11 6 2.2623 2.6910 4.9896 12 6 2.0340 4.1223 5.5363 13 6 2.9910 4.9537 4.6415 14 8 4.3260 4.9066 5.1489 15 6 2.5144 6.3791 4.5316 16 1 1.6148 6.6886 5.0428 17 6 3.2269 7.2881 3.7786 18 7 4.3220 6.9110 3.1557 19 14 2.6357 9.0548 3.6418 20 1 3.2363 9.8636 4.7329 21 1 3.0455 9.6136 2.3284 22 1 1.1556 9.0917 3.7555 23 6 2.9047 4.2349 3.2784 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.0730 4.3299 1.1196 30 1 1.3950 2.0636 5.1951 31 1 3.1593 2.2554 5.4298 32 1 0.9990 4.4337 5.3959 33 1 2.3215 4.1904 6.5854 34 1 4.9639 5.4103 4.6251 35 1 4.8231 7.5505 2.6256 36 1 3.8878 4.2084 2.8083 37 1 2.1963 4.7535 2.6323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597801069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:56 Heat of formation + Delta-G solvation = -43.050990 kcal Electronic energy + Delta-G solvation = -22673.822814 eV Core-core repulsion = 19225.767157 eV Total energy + Delta-G solvation = -3448.055657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.98948 -41.05863 -38.98742 -36.32261 -36.00339 -34.16952 -33.70231 -32.26050 -31.56446 -29.65870 -27.24918 -26.16872 -25.22369 -23.59155 -22.16595 -21.28354 -20.90730 -19.15381 -18.77407 -18.44787 -17.84088 -17.31534 -16.89768 -16.54996 -16.14585 -15.46962 -15.23590 -14.82924 -14.81047 -14.65594 -14.19317 -13.91256 -13.63911 -13.44324 -13.36686 -12.87240 -12.79531 -12.53955 -12.46985 -12.28839 -12.25155 -12.08256 -11.96126 -11.29965 -11.16125 -11.06366 -10.84607 -10.60912 -10.25698 -9.66471 -8.25077 -6.39084 -0.02320 0.65777 1.45726 1.51800 1.57978 1.67561 2.04843 2.20615 2.41984 2.90726 3.01311 3.22668 3.55661 3.81463 3.89541 4.01952 4.16995 4.20051 4.29923 4.31864 4.33236 4.49248 4.57721 4.72365 4.83863 4.87590 4.93474 5.08630 5.12024 5.22304 5.24984 5.29422 5.47426 5.77880 6.04836 6.45349 6.66497 6.96887 7.08454 7.33226 7.45249 8.81243 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019705 B = 0.005897 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.601253 B = 4747.285772 C = 5640.368186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C 0.070 3.930 4 N -0.373 5.373 5 O 0.090 5.910 6 C 0.014 3.986 7 C -0.273 4.273 8 C 0.603 3.397 9 O -0.568 6.568 10 N -0.606 5.606 11 C 0.115 3.885 12 C -0.113 4.113 13 C 0.236 3.764 14 O -0.592 6.592 15 C -0.556 4.556 16 H 0.063 0.937 17 C 0.040 3.960 18 N -0.910 5.910 19 Si 0.954 3.046 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.272 1.272 23 C 0.093 3.907 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.244 0.756 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.381 0.619 35 H 0.275 0.725 36 H 0.063 0.937 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -6.213 -4.327 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.093 4.093 4 N -0.082 5.082 5 O 0.034 5.966 6 C -0.067 4.067 7 C -0.280 4.280 8 C 0.392 3.608 9 O -0.449 6.449 10 N -0.338 5.338 11 C -0.007 4.007 12 C -0.151 4.151 13 C 0.195 3.805 14 O -0.402 6.402 15 C -0.594 4.594 16 H 0.082 0.918 17 C -0.161 4.161 18 N -0.550 5.550 19 Si 0.781 3.219 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.029 4.029 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.260 0.740 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.257 -7.290 -5.192 9.911 hybrid contribution 0.351 1.595 0.393 1.680 sum -3.906 -5.695 -4.799 8.410 Atomic orbital electron populations 1.21629 0.92702 1.03605 1.01416 1.20142 0.97488 0.86075 1.04719 1.25220 0.98664 0.99584 0.85871 1.73609 1.17572 0.93064 1.23918 1.84559 1.61946 1.26673 1.23417 1.27481 0.95582 1.00461 0.83225 1.22282 1.14383 0.96187 0.95166 1.16624 0.77145 0.83678 0.83315 1.90698 1.51419 1.20492 1.82340 1.48566 1.64375 1.13358 1.07510 1.22258 1.01414 0.98249 0.78786 1.22782 0.99649 0.92411 1.00259 1.19654 0.80959 0.92467 0.87391 1.86117 1.20426 1.75862 1.57751 1.21771 1.11164 0.94976 1.31458 0.91831 1.25567 0.94683 1.02115 0.93760 1.69597 1.16442 1.36792 1.32183 0.85605 0.78679 0.80233 0.77407 1.20740 1.20586 1.19712 1.23158 0.98131 0.79517 1.02111 0.89194 0.93961 0.92435 0.88184 0.89103 0.74041 0.89999 0.91719 0.89664 0.89529 0.76741 0.91518 0.91883 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.05 -1.20 6.23 29.85 0.19 -1.01 16 3 C 0.07 2.22 6.84 45.16 0.31 2.52 16 4 N -0.37 -11.88 12.01 -44.77 -0.54 -12.42 16 5 O 0.09 2.81 11.06 76.96 0.85 3.66 16 6 C 0.01 0.45 10.83 67.61 0.73 1.18 16 7 C -0.27 -9.42 6.40 -18.74 -0.12 -9.54 16 8 C 0.60 22.99 7.84 86.65 0.68 23.67 16 9 O -0.57 -23.24 15.96 -4.06 -0.06 -23.31 16 10 N -0.61 -22.96 3.33 -815.67 -2.71 -25.67 16 11 C 0.11 4.07 6.88 86.86 0.60 4.66 16 12 C -0.11 -4.17 6.23 31.99 0.20 -3.97 16 13 C 0.24 10.14 0.86 -10.35 -0.01 10.13 16 14 O -0.59 -27.43 13.07 -148.98 -1.95 -29.37 16 15 C -0.56 -25.84 8.12 25.60 0.21 -25.64 16 16 H 0.06 2.96 7.76 -2.91 -0.02 2.94 16 17 C 0.04 1.84 5.28 84.65 0.45 2.29 16 18 N -0.91 -41.70 10.97 21.45 0.24 -41.46 16 19 Si 0.95 37.58 29.54 68.60 2.03 39.61 16 20 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 23 C 0.09 3.69 3.73 86.73 0.32 4.01 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.09 2.56 7.04 -2.39 -0.02 2.54 16 29 H 0.24 7.44 4.87 -2.91 -0.01 7.42 16 30 H 0.08 2.67 8.09 -2.39 -0.02 2.65 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 33 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.38 18.07 6.98 -74.06 -0.52 17.55 16 35 H 0.28 12.09 8.31 -92.71 -0.77 11.32 16 36 H 0.06 2.57 7.17 -2.39 -0.02 2.55 16 37 H 0.07 2.76 6.49 -2.38 -0.02 2.75 16 Total: -1.00 -52.35 309.98 2.71 -49.64 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.59 Total: 33.39 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 4.26 Total: 5.93 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.01 Total: -79.55 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.16 Total: -49.02 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -52.35 2.71 -49.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -52.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds