Wall clock time and date at job start Tue Mar 31 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47030 * 2 1 4 4 N 1.30008 * 127.33323 * 269.99651 * 3 2 1 5 5 O 1.20657 * 112.30001 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.16052 * 359.75369 * 5 4 3 7 7 C 1.37368 * 106.33814 * 0.39275 * 6 5 4 8 8 C 1.47390 * 128.56581 * 179.91022 * 7 6 5 9 9 O 1.21603 * 120.00423 * 179.67328 * 8 7 6 10 10 N 1.34779 * 119.99789 * 359.67403 * 8 7 6 11 11 C 1.47023 * 125.65028 * 359.95516 * 10 8 7 12 12 C 1.54428 * 107.28135 * 181.09744 * 11 10 8 13 13 C 1.55160 * 102.89386 * 22.18588 * 12 11 10 14 14 O 1.42905 * 111.00102 * 82.59578 * 13 12 11 15 15 C 1.50701 * 111.00410 * 206.40650 * 13 12 11 16 16 H 1.07994 * 120.00187 * 356.81970 * 15 13 12 17 17 C 1.37878 * 119.99769 * 176.82468 * 15 13 12 18 18 N 1.31509 * 120.00073 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99731 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46954 * 89.99720 * 19 17 15 21 21 H 1.48495 * 109.46855 * 209.99710 * 19 17 15 22 22 H 1.48495 * 109.47193 * 329.99856 * 19 17 15 23 23 C 1.47433 * 125.64677 * 179.97438 * 10 8 7 24 24 H 1.08992 * 109.47409 * 300.00295 * 1 2 3 25 25 H 1.09000 * 109.46724 * 60.00623 * 1 2 3 26 26 H 1.08999 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47409 * 239.99705 * 2 1 3 28 28 H 1.09000 * 109.46724 * 119.99377 * 2 1 3 29 29 H 1.07991 * 126.83445 * 180.29740 * 6 5 4 30 30 H 1.08996 * 109.88347 * 300.51248 * 11 10 8 31 31 H 1.09002 * 109.87899 * 61.53090 * 11 10 8 32 32 H 1.08999 * 110.72281 * 263.84993 * 12 11 10 33 33 H 1.08996 * 110.76416 * 140.54540 * 12 11 10 34 34 H 0.96697 * 113.99904 * 183.18164 * 14 13 12 35 35 H 0.97000 * 120.00160 * 180.02562 * 18 17 15 36 36 H 1.09000 * 110.36418 * 37.00051 * 23 10 8 37 37 H 1.08997 * 110.36595 * 274.67504 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2952 2.1642 -1.0337 5 8 2.6831 3.2630 -0.7208 6 6 2.7406 3.4429 0.6008 7 6 2.3291 2.2622 1.1697 8 6 2.2084 1.9240 2.5992 9 8 1.8182 0.8216 2.9324 10 7 2.5305 2.8368 3.5371 11 6 3.0140 4.2004 3.2754 12 6 3.2774 4.8644 4.6445 13 6 3.4660 3.6477 5.5888 14 8 4.8017 3.1449 5.5156 15 6 3.1029 4.0036 7.0075 16 1 2.8138 5.0146 7.2535 17 6 3.1399 3.0383 7.9913 18 7 3.4916 1.8071 7.6917 19 14 2.6891 3.4793 9.7497 20 1 1.2320 3.2770 9.9527 21 1 3.4449 2.6104 10.6872 22 1 3.0320 4.9011 10.0069 23 6 2.4568 2.6330 4.9954 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.0506 4.3379 1.1194 30 1 3.9379 4.1618 2.6984 31 1 2.2580 4.7629 2.7275 32 1 2.4209 5.4634 4.9538 33 1 4.1822 5.4713 4.6120 34 1 4.9543 2.3546 6.0515 35 1 3.5172 1.1279 8.3838 36 1 2.7483 1.6144 5.2513 37 1 1.4503 2.8429 5.3573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597801070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:59 Heat of formation + Delta-G solvation = -44.469898 kcal Electronic energy + Delta-G solvation = -22443.313903 eV Core-core repulsion = 18995.196718 eV Total energy + Delta-G solvation = -3448.117185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.98695 -41.00679 -38.91412 -36.28906 -36.13970 -34.19040 -33.48399 -32.28108 -31.68757 -29.62940 -27.50429 -25.78636 -25.29121 -23.70169 -22.01406 -21.36679 -20.92067 -19.13261 -18.77489 -18.43258 -17.86826 -17.22937 -16.66174 -16.63079 -16.15482 -15.58652 -15.23480 -14.93174 -14.77104 -14.68146 -14.32736 -13.72245 -13.68933 -13.49327 -13.26110 -12.83945 -12.79125 -12.56738 -12.43253 -12.32038 -12.22360 -12.10635 -11.94810 -11.27421 -11.14344 -11.02126 -10.81312 -10.65677 -10.32210 -9.53900 -8.25432 -6.42140 0.04289 0.68168 1.42553 1.45631 1.54624 1.72802 2.11502 2.25590 2.39937 2.92137 3.01512 3.25581 3.62363 3.76110 3.83262 4.09670 4.17506 4.19726 4.28246 4.28667 4.34535 4.52406 4.58651 4.73008 4.80402 4.91240 5.03485 5.08149 5.11825 5.21493 5.27434 5.40126 5.47274 5.76682 6.05634 6.53736 6.67571 7.04570 7.15310 7.29281 7.36327 8.79978 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.004654 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.052344 B = 6015.079134 C = 6606.299560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 C 0.060 3.940 4 N -0.371 5.371 5 O 0.102 5.898 6 C 0.020 3.980 7 C -0.272 4.272 8 C 0.594 3.406 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.087 3.913 12 C -0.111 4.111 13 C 0.231 3.769 14 O -0.588 6.588 15 C -0.556 4.556 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.918 5.918 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.109 3.891 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.270 0.730 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.375 0.625 35 H 0.269 0.731 36 H 0.044 0.956 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 4.910 -13.023 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C -0.102 4.102 4 N -0.078 5.078 5 O 0.044 5.956 6 C -0.062 4.062 7 C -0.280 4.280 8 C 0.383 3.617 9 O -0.464 6.464 10 N -0.336 5.336 11 C -0.034 4.034 12 C -0.149 4.149 13 C 0.191 3.809 14 O -0.396 6.396 15 C -0.594 4.594 16 H 0.090 0.910 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.788 3.212 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.014 4.014 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.285 0.715 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.653 4.486 -14.563 15.467 hybrid contribution -0.267 -0.916 2.663 2.828 sum -2.919 3.570 -11.900 12.762 Atomic orbital electron populations 1.21606 0.92814 1.03380 1.01419 1.20073 0.97487 0.86966 1.04167 1.25092 0.99210 0.99523 0.86395 1.73619 1.17384 0.93223 1.23544 1.84545 1.61556 1.25962 1.23569 1.27619 0.95299 1.00332 0.82953 1.22184 1.14666 0.97000 0.94134 1.16882 0.77618 0.83414 0.83746 1.90729 1.49784 1.23239 1.82603 1.48578 1.63384 1.14661 1.06986 1.22648 1.00234 0.81286 0.99281 1.22662 1.03190 0.96762 0.92253 1.19882 0.79078 0.89154 0.92810 1.86071 1.31703 1.49378 1.72498 1.21848 1.47080 0.96883 0.93561 0.90995 1.25807 0.93684 0.94633 1.03272 1.69765 1.48120 1.02556 1.35303 0.85486 0.78050 0.78505 0.79193 1.20315 1.21195 1.18819 1.22900 0.99974 1.01389 0.77104 0.94223 0.91884 0.89778 0.88280 0.90182 0.71495 0.89331 0.87564 0.88823 0.88977 0.77575 0.92136 0.93716 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.90 71.98 0.71 -2.50 16 2 C -0.05 -1.31 6.20 29.85 0.18 -1.13 16 3 C 0.06 1.78 6.84 45.16 0.31 2.09 16 4 N -0.37 -10.11 12.01 -44.79 -0.54 -10.65 16 5 O 0.10 2.34 11.06 76.99 0.85 3.20 16 6 C 0.02 0.42 10.83 67.61 0.73 1.15 16 7 C -0.27 -8.30 6.41 -18.74 -0.12 -8.42 16 8 C 0.59 23.22 7.84 86.65 0.68 23.90 16 9 O -0.58 -27.28 15.95 -4.04 -0.06 -27.34 16 10 N -0.60 -22.99 3.33 -815.45 -2.71 -25.70 16 11 C 0.09 2.37 5.05 86.76 0.44 2.81 16 12 C -0.11 -3.68 6.13 31.82 0.20 -3.48 16 13 C 0.23 10.49 0.88 -10.14 -0.01 10.48 16 14 O -0.59 -28.91 13.17 -148.98 -1.96 -30.87 16 15 C -0.56 -27.55 8.26 25.60 0.21 -27.33 16 16 H 0.07 3.42 7.78 -2.91 -0.02 3.40 16 17 C 0.03 1.36 5.29 84.66 0.45 1.81 16 18 N -0.92 -48.99 10.69 21.45 0.23 -48.77 16 19 Si 0.96 40.59 29.54 68.60 2.03 42.61 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C 0.11 5.09 5.51 86.86 0.48 5.56 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 2.50 7.11 -2.39 -0.02 2.48 16 29 H 0.27 3.30 4.83 -2.92 -0.01 3.28 16 30 H 0.09 2.03 6.97 -2.39 -0.02 2.01 16 31 H 0.11 1.97 7.08 -2.39 -0.02 1.95 16 32 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.37 19.73 7.25 -74.06 -0.54 19.19 16 35 H 0.27 13.87 8.31 -92.71 -0.77 13.09 16 36 H 0.04 2.44 7.47 -2.39 -0.02 2.42 16 37 H 0.05 2.34 8.03 -2.39 -0.02 2.32 16 Total: -1.00 -65.49 309.75 2.66 -62.82 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.57 Total: 29.76 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 4.26 Total: 4.94 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.02 Total: -85.12 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -1.17 Total: -55.01 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -65.49 2.66 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.353 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds