Wall clock time and date at job start Tue Mar 31 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48500 * 109.46895 * 270.00045 * 3 2 1 5 5 H 1.48496 * 109.46881 * 30.00078 * 3 2 1 6 6 H 1.48498 * 109.47172 * 150.00266 * 3 2 1 7 7 C 1.37878 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46743 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47073 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99899 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00176 * 179.97438 * 11 10 9 14 14 C 1.39564 * 120.00081 * 185.26092 * 13 11 10 15 15 C 1.39565 * 120.83066 * 32.71179 * 14 13 11 16 16 C 1.37804 * 119.20323 * 180.30519 * 15 14 13 17 17 N 1.32057 * 120.90730 * 359.69453 * 16 15 14 18 18 C 1.32344 * 121.81571 * 0.02562 * 17 16 15 19 19 O 1.35681 * 119.64759 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99739 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47099 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47136 * 64.99684 * 21 20 19 23 23 C 1.38662 * 120.70645 * 0.02562 * 18 17 16 24 24 H 0.97000 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47074 * 60.00119 * 9 7 2 26 26 H 1.09001 * 109.47226 * 300.00026 * 9 7 2 27 27 H 1.08994 * 109.47402 * 60.00120 * 10 9 7 28 28 H 1.09001 * 109.47118 * 299.99893 * 10 9 7 29 29 H 0.96996 * 119.99916 * 5.26451 * 13 11 10 30 30 H 1.08004 * 120.39617 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.54830 * 179.72696 * 16 15 14 32 32 H 1.09005 * 109.47274 * 299.99480 * 20 19 18 33 33 H 1.08994 * 109.47112 * 60.00191 * 20 19 18 34 34 H 1.08997 * 109.47876 * 184.99765 * 21 20 19 35 35 H 1.09003 * 109.47238 * 305.00360 * 21 20 19 36 36 H 0.96703 * 114.00072 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.49225 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1343 -0.0018 14 6 1.4723 -7.3404 -0.1132 15 6 0.2969 -7.4233 -0.8611 16 6 -0.3641 -8.6296 -0.9433 17 7 0.1031 -9.7022 -0.3309 18 6 1.2167 -9.6682 0.3836 19 8 1.6565 -10.7967 0.9950 20 6 0.8694 -11.9769 0.8225 21 6 1.5185 -13.1378 1.5787 22 8 1.4915 -12.8670 2.9815 23 6 1.9380 -8.4913 0.5148 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 3.1326 -6.1361 0.0752 30 1 -0.0924 -6.5513 -1.3657 31 1 -1.2766 -8.6990 -1.5170 32 1 -0.1339 -11.8047 1.2124 33 1 0.8101 -12.2223 -0.2378 34 1 0.9685 -14.0567 1.3755 35 1 2.5517 -13.2527 1.2507 36 1 1.8879 -13.5624 3.5241 37 1 2.8461 -8.4674 1.0990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598466901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:48 Heat of formation + Delta-G solvation = -94.183088 kcal Electronic energy + Delta-G solvation = -20581.492668 eV Core-core repulsion = 17131.219757 eV Total energy + Delta-G solvation = -3450.272911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89245 -39.59782 -38.10192 -36.77169 -35.02379 -33.57463 -31.54809 -31.25559 -30.26947 -29.42238 -26.01611 -23.95448 -23.54928 -22.55070 -21.36352 -19.96634 -18.76992 -18.01335 -17.31960 -16.75456 -16.27818 -15.97406 -15.75328 -15.55432 -15.04614 -14.80689 -14.49107 -14.31597 -13.99005 -13.43837 -13.37448 -13.02420 -12.53841 -12.24820 -12.08247 -11.71535 -11.27758 -11.21802 -10.98321 -10.78154 -10.64664 -10.49178 -10.06621 -9.94981 -9.71417 -9.29527 -9.14045 -8.68710 -8.44628 -8.37234 -6.01590 -4.06588 1.12102 1.29021 2.71020 2.96286 3.30256 3.30681 3.37245 3.39681 3.80889 3.85936 4.29181 4.42920 4.65836 4.79564 4.84625 4.95396 5.12198 5.17337 5.23815 5.33679 5.38977 5.49073 5.55272 5.82514 6.03968 6.06311 6.16090 6.18874 6.70590 6.74241 7.16835 7.24325 7.49858 7.66953 7.75500 7.86499 7.98873 8.27497 8.44342 9.01052 9.57518 11.09277 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046310 B = 0.002582 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.472529 B =10840.147708 C =11135.511469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.505 6.505 13 N -0.681 5.681 14 C 0.237 3.763 15 C -0.213 4.213 16 C 0.154 3.846 17 N -0.560 5.560 18 C 0.337 3.663 19 O -0.300 6.300 20 C 0.072 3.928 21 C 0.076 3.924 22 O -0.567 6.567 23 C -0.229 4.229 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.413 0.587 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.380 0.620 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 -25.245 -0.024 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.376 6.376 13 N -0.327 5.327 14 C 0.133 3.867 15 C -0.236 4.236 16 C 0.000 4.000 17 N -0.286 5.286 18 C 0.158 3.842 19 O -0.207 6.207 20 C -0.003 4.003 21 C -0.002 4.002 22 O -0.372 6.372 23 C -0.253 4.253 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.250 0.750 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.914 -25.293 -0.134 25.594 hybrid contribution 1.482 1.052 0.203 1.829 sum 5.396 -24.241 0.069 24.834 Atomic orbital electron populations 1.69989 1.06072 1.26728 1.49922 1.25027 0.94845 0.99309 0.95183 0.86568 0.79759 0.83391 0.78097 1.20633 1.21190 1.19862 1.21179 0.92959 0.90859 1.51761 0.92496 1.18935 0.93125 0.89286 0.98807 1.21944 1.00911 0.90844 1.03114 1.21967 0.88907 0.85261 0.73804 1.90705 1.14280 1.87099 1.45557 1.43970 1.11069 1.04055 1.73649 1.17758 0.92339 0.85501 0.91104 1.22076 0.97769 1.00577 1.03153 1.22227 0.97708 0.86461 0.93618 1.67326 1.14098 1.33161 1.14036 1.19356 0.89132 0.86101 0.89627 1.86252 1.49800 1.16389 1.68296 1.22642 0.95353 0.82437 0.99899 1.22281 1.00349 0.95729 0.81848 1.86597 1.84354 1.49221 1.17038 1.20607 1.05621 0.90895 1.08192 0.92856 0.95651 0.95664 0.89634 0.89512 0.75043 0.83199 0.82073 0.90794 0.90130 0.91413 0.92593 0.77318 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.93 4.26 -27.88 -0.12 0.81 16 10 C -0.13 -2.43 5.64 -27.88 -0.16 -2.59 16 11 C 0.51 9.27 7.60 -10.99 -0.08 9.19 16 12 O -0.50 -11.15 13.69 5.55 0.08 -11.07 16 13 N -0.68 -9.48 5.35 -9.72 -0.05 -9.53 16 14 C 0.24 3.45 6.32 -83.51 -0.53 2.92 16 15 C -0.21 -3.17 8.73 -39.25 -0.34 -3.52 16 16 C 0.15 2.03 11.17 -17.61 -0.20 1.84 16 17 N -0.56 -7.74 9.21 -13.41 -0.12 -7.86 16 18 C 0.34 4.69 7.48 -17.17 -0.13 4.57 16 19 O -0.30 -3.89 10.08 -23.60 -0.24 -4.13 16 20 C 0.07 0.72 5.69 37.16 0.21 0.93 16 21 C 0.08 0.54 7.43 37.16 0.28 0.81 16 22 O -0.57 -4.99 13.62 -40.09 -0.55 -5.53 16 23 C -0.23 -3.07 9.98 -39.09 -0.39 -3.46 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 27 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.41 4.20 8.82 -40.82 -0.36 3.84 16 30 H 0.15 2.43 6.48 -52.48 -0.34 2.09 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 1.38 9.12 45.56 0.42 1.79 16 37 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -35.88 326.53 -6.16 -42.04 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.05 Total: 2.92 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.87 Total: -1.85 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.56 Total: -43.60 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.71 Total: -20.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.88 -6.16 -42.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598466901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.144 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds