Wall clock time and date at job start Tue Mar 31 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48500 * 109.46895 * 270.00045 * 3 2 1 5 5 H 1.48496 * 109.46881 * 30.00078 * 3 2 1 6 6 H 1.48498 * 109.47172 * 150.00266 * 3 2 1 7 7 C 1.37878 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46743 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47073 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99899 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00176 * 179.97438 * 11 10 9 14 14 C 1.39564 * 120.00081 * 185.26092 * 13 11 10 15 15 C 1.39565 * 120.83066 * 32.71179 * 14 13 11 16 16 C 1.37804 * 119.20323 * 180.30519 * 15 14 13 17 17 N 1.32057 * 120.90730 * 359.69453 * 16 15 14 18 18 C 1.32344 * 121.81571 * 0.02562 * 17 16 15 19 19 O 1.35681 * 119.64759 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99739 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47099 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47136 * 64.99684 * 21 20 19 23 23 C 1.38662 * 120.70645 * 0.02562 * 18 17 16 24 24 H 0.97000 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47074 * 60.00119 * 9 7 2 26 26 H 1.09001 * 109.47226 * 300.00026 * 9 7 2 27 27 H 1.08994 * 109.47402 * 60.00120 * 10 9 7 28 28 H 1.09001 * 109.47118 * 299.99893 * 10 9 7 29 29 H 0.96996 * 119.99916 * 5.26451 * 13 11 10 30 30 H 1.08004 * 120.39617 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.54830 * 179.72696 * 16 15 14 32 32 H 1.09005 * 109.47274 * 299.99480 * 20 19 18 33 33 H 1.08994 * 109.47112 * 60.00191 * 20 19 18 34 34 H 1.08997 * 109.47876 * 184.99765 * 21 20 19 35 35 H 1.09003 * 109.47238 * 305.00360 * 21 20 19 36 36 H 0.96703 * 114.00072 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.49225 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1343 -0.0018 14 6 1.4723 -7.3404 -0.1132 15 6 0.2969 -7.4233 -0.8611 16 6 -0.3641 -8.6296 -0.9433 17 7 0.1031 -9.7022 -0.3309 18 6 1.2167 -9.6682 0.3836 19 8 1.6565 -10.7967 0.9950 20 6 0.8694 -11.9769 0.8225 21 6 1.5185 -13.1378 1.5787 22 8 1.4915 -12.8670 2.9815 23 6 1.9380 -8.4913 0.5148 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 3.1326 -6.1361 0.0752 30 1 -0.0924 -6.5513 -1.3657 31 1 -1.2766 -8.6990 -1.5170 32 1 -0.1339 -11.8047 1.2124 33 1 0.8101 -12.2223 -0.2378 34 1 0.9685 -14.0567 1.3755 35 1 2.5517 -13.2527 1.2507 36 1 1.8879 -13.5624 3.5241 37 1 2.8461 -8.4674 1.0990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598466901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:48 Heat of formation + Delta-G solvation = -123.984853 kcal Electronic energy + Delta-G solvation = -20582.784969 eV Core-core repulsion = 17131.219757 eV Total energy + Delta-G solvation = -3451.565212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03559 -40.84312 -39.09598 -37.46806 -36.30965 -35.58090 -33.24607 -32.27614 -31.60725 -30.26464 -27.88332 -25.16224 -24.64627 -23.76555 -22.66777 -21.43020 -19.81876 -18.96777 -18.62515 -18.01163 -17.67416 -17.17366 -16.90920 -16.75473 -16.43755 -16.30480 -15.57847 -15.23371 -15.18071 -14.84510 -14.43283 -14.19975 -14.15260 -13.79023 -13.30227 -13.10966 -12.82920 -12.51387 -12.47364 -12.10288 -11.93366 -11.91391 -11.66533 -11.33169 -11.15316 -11.00728 -10.59633 -10.56212 -9.81738 -9.54854 -8.18005 -6.31563 0.02258 0.17316 1.43360 1.45554 1.54967 1.56384 1.68360 2.21756 2.44114 2.74692 3.15709 3.31555 3.34012 3.69766 3.97206 4.02100 4.08668 4.14596 4.22565 4.42164 4.49001 4.52805 4.53171 4.64684 4.76418 4.77936 5.00480 5.04385 5.12528 5.49262 5.55450 5.62217 5.85121 6.16667 6.20021 6.32621 6.79937 6.86376 6.90487 7.07373 7.38784 8.94493 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046310 B = 0.002582 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.472529 B =10840.147708 C =11135.511469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.116 4.116 11 C 0.516 3.484 12 O -0.553 6.553 13 N -0.658 5.658 14 C 0.223 3.777 15 C -0.231 4.231 16 C 0.158 3.842 17 N -0.563 5.563 18 C 0.327 3.673 19 O -0.308 6.308 20 C 0.063 3.937 21 C 0.078 3.922 22 O -0.597 6.597 23 C -0.224 4.224 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.016 1.016 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.434 0.566 30 H 0.131 0.869 31 H 0.189 0.811 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 -26.429 0.120 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.155 4.155 11 C 0.307 3.693 12 O -0.429 6.429 13 N -0.306 5.306 14 C 0.119 3.881 15 C -0.254 4.254 16 C 0.003 3.997 17 N -0.289 5.289 18 C 0.148 3.852 19 O -0.216 6.216 20 C -0.012 4.012 21 C 0.001 3.999 22 O -0.406 6.406 23 C -0.247 4.247 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.274 0.726 30 H 0.149 0.851 31 H 0.205 0.795 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.251 0.749 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.461 -26.544 0.021 27.319 hybrid contribution 0.678 1.269 0.171 1.449 sum 7.139 -25.275 0.192 26.264 Atomic orbital electron populations 1.70167 1.08263 1.27791 1.51500 1.26117 0.95704 1.03909 0.94736 0.85340 0.78690 0.77861 0.78476 1.19755 1.21413 1.17890 1.21706 0.94096 0.91491 1.50673 0.90390 1.18723 0.93739 0.92280 0.95044 1.21695 0.99408 0.88661 1.05764 1.21715 0.88122 0.86186 0.73298 1.90701 1.16312 1.87791 1.48125 1.43527 1.11932 1.02782 1.72327 1.17858 0.92597 0.85813 0.91830 1.22076 0.98563 1.00676 1.04052 1.22609 0.98194 0.85661 0.93207 1.67404 1.14255 1.33191 1.14088 1.19620 0.89184 0.86804 0.89573 1.86255 1.50385 1.16853 1.68060 1.22951 0.94788 0.82234 1.01237 1.22380 1.01288 0.95312 0.80920 1.86530 1.84921 1.51001 1.18127 1.20756 1.06141 0.90119 1.07680 0.92893 0.99492 0.99756 0.86918 0.86713 0.72613 0.85066 0.79466 0.92291 0.88941 0.88321 0.91417 0.74942 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.12 4.26 29.85 0.13 2.25 16 10 C -0.12 -4.27 5.64 29.85 0.17 -4.11 16 11 C 0.52 18.73 7.60 87.66 0.67 19.39 16 12 O -0.55 -25.48 13.69 -3.04 -0.04 -25.52 16 13 N -0.66 -17.45 5.35 -303.07 -1.62 -19.07 16 14 C 0.22 6.30 6.32 38.45 0.24 6.54 16 15 C -0.23 -6.94 8.73 22.49 0.20 -6.75 16 16 C 0.16 4.08 11.17 84.56 0.94 5.03 16 17 N -0.56 -15.04 9.21 -309.16 -2.85 -17.89 16 18 C 0.33 8.72 7.48 84.72 0.63 9.36 16 19 O -0.31 -7.55 10.08 -85.34 -0.86 -8.41 16 20 C 0.06 1.16 5.69 71.98 0.41 1.57 16 21 C 0.08 0.93 7.43 71.98 0.53 1.47 16 22 O -0.60 -9.45 13.62 -144.34 -1.97 -11.42 16 23 C -0.22 -5.63 9.98 22.59 0.23 -5.40 16 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 25 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 26 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 27 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 28 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.43 7.67 8.82 -92.71 -0.82 6.86 16 30 H 0.13 4.47 6.48 -2.91 -0.02 4.45 16 31 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.06 1.25 8.10 -2.38 -0.02 1.23 16 33 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.40 2.14 9.12 -74.06 -0.68 1.46 16 37 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -80.51 326.53 -0.57 -81.08 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.39 Total: 14.17 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.84 Total: -0.22 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.18 Total: -95.28 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.87 Total: -45.35 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -80.51 -0.57 -81.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598466901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.904 kcal (2) G-P(sol) polarization free energy of solvation -80.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds