Wall clock time and date at job start Tue Mar 31 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47269 * 269.99948 * 3 2 1 5 5 H 1.48502 * 109.47528 * 30.00160 * 3 2 1 6 6 H 1.48502 * 109.47261 * 150.00026 * 3 2 1 7 7 C 1.37878 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00326 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99854 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47262 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47377 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00248 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99897 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00273 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00136 * 180.02562 * 15 13 12 17 17 H 1.08995 * 115.55268 * 9.31904 * 16 15 13 18 18 C 1.53004 * 117.49360 * 223.61920 * 16 15 13 19 19 C 1.52997 * 117.50042 * 154.99807 * 16 15 13 20 20 H 1.09005 * 117.49905 * 359.96944 * 19 16 15 21 21 C 1.52997 * 117.49949 * 214.97518 * 19 16 15 22 22 F 1.39905 * 109.47157 * 59.99639 * 21 19 16 23 23 F 1.39900 * 109.47010 * 300.00030 * 21 19 16 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 19 16 25 25 H 0.97002 * 119.99827 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47224 * 59.99469 * 9 7 2 27 27 H 1.08996 * 109.46902 * 299.99337 * 9 7 2 28 28 H 1.09004 * 109.47048 * 59.99849 * 10 9 7 29 29 H 1.09004 * 109.47030 * 300.00075 * 10 9 7 30 30 H 1.09004 * 109.46836 * 60.00181 * 11 10 9 31 31 H 1.08996 * 109.47267 * 300.00064 * 11 10 9 32 32 H 0.97000 * 119.99575 * 0.02562 * 12 11 10 33 33 H 0.97000 * 119.99550 * 359.97438 * 15 13 12 34 34 H 1.08997 * 117.49770 * 145.01708 * 18 16 15 35 35 H 1.08999 * 117.49991 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6369 -0.0001 12 7 6.0396 -4.0181 -0.0009 13 6 7.3646 -4.2645 -0.0005 14 8 8.1548 -3.3403 -0.0001 15 7 7.8138 -5.5352 -0.0017 16 6 9.2542 -5.8030 -0.0008 17 1 9.8936 -4.9351 0.1601 18 6 9.7698 -6.8969 -0.9380 19 6 9.7234 -7.1420 0.5715 20 1 8.9605 -7.8236 0.9478 21 6 11.0546 -7.1605 1.3255 22 9 10.9813 -6.2949 2.4223 23 9 12.0806 -6.7439 0.4706 24 9 11.3188 -8.4591 1.7737 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8751 -0.6799 -0.8895 28 1 3.6583 -3.1504 -0.8903 29 1 3.6576 -3.1508 0.8897 30 1 5.9147 -2.1231 0.8899 31 1 5.9147 -2.1230 -0.8900 32 1 5.4092 -4.7553 -0.0016 33 1 7.1834 -6.2724 -0.0025 34 1 10.7487 -6.7487 -1.3939 35 1 9.0374 -7.4176 -1.5549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601569817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:37 Heat of formation + Delta-G solvation = -194.289314 kcal Electronic energy + Delta-G solvation = -21039.106473 eV Core-core repulsion = 17042.635890 eV Total energy + Delta-G solvation = -3996.470583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.11452 -48.65407 -48.61498 -41.18613 -38.75951 -36.92274 -35.17071 -34.24415 -32.91332 -28.95236 -27.78789 -24.90620 -23.21240 -22.65405 -22.25774 -21.88542 -19.73629 -19.54667 -19.34373 -18.91504 -18.24235 -17.58147 -16.82862 -16.41020 -15.91085 -15.65838 -15.52207 -15.42862 -15.27259 -15.05140 -14.82365 -14.77506 -14.75532 -14.45244 -13.80752 -13.72233 -13.61515 -12.79146 -12.69977 -12.68838 -12.56591 -11.95872 -11.90147 -11.77210 -11.57199 -11.36742 -11.30025 -10.74697 -10.31773 -9.74167 -8.28179 -6.31784 1.36571 1.38332 1.40330 1.51842 1.81770 1.90465 2.37748 2.39140 2.79425 2.92388 3.07933 3.19173 3.37998 3.53261 3.73676 4.01087 4.11907 4.24801 4.51948 4.53825 4.79104 4.85356 4.92775 4.94657 5.06552 5.36290 5.41844 5.52935 5.58835 5.66711 5.94038 6.28949 6.76534 7.03632 7.33179 7.50721 8.88199 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.046544 B = 0.002458 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.436960 B =11390.458838 C =11534.477386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.146 3.854 12 N -0.728 5.728 13 C 0.703 3.297 14 O -0.634 6.634 15 N -0.700 5.700 16 C 0.115 3.885 17 H 0.123 0.877 18 C -0.137 4.137 19 C -0.230 4.230 20 H 0.174 0.826 21 C 0.482 3.518 22 F -0.192 7.192 23 F -0.185 7.185 24 F -0.181 7.181 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.124 0.876 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.431 -19.309 -0.474 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.021 3.979 12 N -0.383 5.383 13 C 0.403 3.597 14 O -0.515 6.515 15 N -0.355 5.355 16 C 0.007 3.993 17 H 0.141 0.859 18 C -0.176 4.176 19 C -0.251 4.251 20 H 0.191 0.809 21 C 0.428 3.572 22 F -0.173 7.173 23 F -0.166 7.166 24 F -0.163 7.163 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.250 0.750 33 H 0.257 0.743 34 H 0.142 0.858 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.989 -18.338 -0.447 29.410 hybrid contribution -0.530 0.198 0.376 0.679 sum 22.459 -18.140 -0.071 28.870 Atomic orbital electron populations 1.70060 1.08225 1.28097 1.52813 1.25982 0.95577 1.03435 0.94293 0.85706 0.79536 0.78543 0.79179 1.19237 1.21196 1.17079 1.21475 0.91935 0.93239 1.50074 0.94321 1.19473 0.94010 0.94789 0.96851 1.21470 0.91904 0.98032 1.02280 1.21173 0.94048 0.81369 1.01310 1.45002 1.04797 1.09724 1.78784 1.16031 0.82830 0.83405 0.77439 1.90913 1.56140 1.44813 1.59636 1.44148 1.06301 1.06016 1.79040 1.21311 0.82566 0.92448 1.02948 0.85883 1.23880 1.05583 0.99162 0.88963 1.24087 0.95779 1.05452 0.99781 0.80864 1.19742 0.86830 0.73148 0.77490 1.93207 1.96586 1.70736 1.56773 1.93168 1.62912 1.90255 1.70287 1.93191 1.95019 1.38090 1.89968 0.92551 0.96134 0.96135 0.91512 0.91664 0.92728 0.92458 0.75009 0.74277 0.85763 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -29.57 9.66 25.60 0.25 -29.32 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 11 C 0.15 4.40 5.67 86.38 0.49 4.89 16 12 N -0.73 -17.02 5.56 -478.54 -2.66 -19.68 16 13 C 0.70 17.90 8.57 179.06 1.53 19.44 16 14 O -0.63 -22.43 15.91 -4.00 -0.06 -22.49 16 15 N -0.70 -10.82 5.57 -457.81 -2.55 -13.37 16 16 C 0.12 1.71 6.08 44.99 0.27 1.98 16 17 H 0.12 2.57 7.40 -2.39 -0.02 2.55 16 18 C -0.14 -1.09 9.85 30.60 0.30 -0.79 16 19 C -0.23 -2.27 5.82 -10.80 -0.06 -2.33 16 20 H 0.17 0.85 8.14 -2.38 -0.02 0.83 16 21 C 0.48 7.15 3.36 71.98 0.24 7.40 16 22 F -0.19 -3.74 17.27 44.97 0.78 -2.96 16 23 F -0.18 -2.98 15.89 44.97 0.71 -2.26 16 24 F -0.18 -2.77 17.32 44.97 0.78 -1.99 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 26 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 27 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.41 6.85 8.49 -92.71 -0.79 6.07 16 33 H 0.42 3.25 8.84 -92.71 -0.82 2.43 16 34 H 0.12 0.97 7.22 -2.39 -0.02 0.96 16 35 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -73.58 315.35 2.43 -71.15 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.52 Total: 6.18 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 3.77 Total: -1.75 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -4.91 Total: -91.77 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 2.27 Total: -7.21 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -73.58 2.43 -71.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601569817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.135 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds