Wall clock time and date at job start Tue Mar 31 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48504 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 299.99700 * 3 2 1 6 6 H 1.48501 * 109.47199 * 59.99778 * 3 2 1 7 7 C 1.37881 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47283 * 180.02562 * 10 9 7 12 12 H 1.08988 * 109.47369 * 54.99534 * 11 10 9 13 13 N 1.46901 * 109.46588 * 294.99732 * 11 10 9 14 14 C 1.50696 * 109.47191 * 174.99976 * 11 10 9 15 15 O 1.21284 * 120.00199 * 99.99780 * 14 11 10 16 16 N 1.34772 * 120.00223 * 279.99762 * 14 11 10 17 17 C 1.46501 * 120.00441 * 180.02562 * 16 14 11 18 18 H 1.09002 * 115.54982 * 9.41513 * 17 16 14 19 19 C 1.53005 * 117.49876 * 223.74459 * 17 16 14 20 20 C 1.52999 * 59.99973 * 252.48587 * 19 17 16 21 21 H 1.08995 * 117.49529 * 107.48826 * 20 19 17 22 22 C 1.52995 * 117.50039 * 252.50950 * 20 19 17 23 23 F 1.39902 * 109.47480 * 128.62172 * 22 20 19 24 24 F 1.39892 * 109.47373 * 248.62400 * 22 20 19 25 25 F 1.39905 * 109.47059 * 8.62596 * 22 20 19 26 26 H 0.97004 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47352 * 60.00217 * 9 7 2 28 28 H 1.08999 * 109.47088 * 299.99656 * 9 7 2 29 29 H 1.08999 * 109.46927 * 59.99842 * 10 9 7 30 30 H 1.09007 * 109.47043 * 299.99991 * 10 9 7 31 31 H 1.00903 * 111.00205 * 299.99967 * 13 11 10 32 32 H 1.00896 * 111.00098 * 63.95589 * 13 11 10 33 33 H 0.97003 * 119.99804 * 359.97438 * 16 14 11 34 34 H 1.09004 * 117.49602 * 359.97438 * 19 17 16 35 35 H 1.09004 * 117.49360 * 144.99639 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7890 -5.0072 -0.8413 13 7 0.7271 -5.1182 1.2557 14 6 2.4549 -6.1299 -0.1214 15 8 2.7857 -6.7533 0.8650 16 7 2.9591 -6.4592 -1.3271 17 6 3.9062 -7.5705 -1.4464 18 1 4.0309 -8.1801 -0.5514 19 6 5.1343 -7.3598 -2.3343 20 6 4.0012 -8.2761 -2.8006 21 1 3.3588 -7.9136 -3.6031 22 6 4.2638 -9.7833 -2.7950 23 9 3.2316 -10.4341 -2.1107 24 9 4.3183 -10.2521 -4.1119 25 9 5.4818 -10.0421 -2.1571 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8711 -3.6039 0.8923 30 1 2.8726 -3.6047 -0.8878 31 1 1.3461 -5.1024 2.0524 32 1 0.0223 -4.4002 1.3310 33 1 2.6942 -5.9608 -2.1161 34 1 5.2372 -6.3945 -2.8301 35 1 6.0668 -7.8308 -2.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602612613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:35 Heat of formation + Delta-G solvation = -180.633389 kcal Electronic energy + Delta-G solvation = -21614.683793 eV Core-core repulsion = 17618.805375 eV Total energy + Delta-G solvation = -3995.878417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.35478 -47.90127 -47.82447 -39.98865 -37.80687 -35.51867 -33.15481 -32.87329 -29.95764 -27.41380 -26.51579 -24.24732 -22.33063 -21.90373 -20.91282 -20.04849 -18.81080 -18.60244 -18.09640 -17.16023 -16.60924 -16.24755 -14.98955 -14.76489 -14.72507 -14.69947 -14.46267 -14.28630 -14.27031 -14.04607 -14.00051 -13.71923 -13.33837 -13.11858 -12.85304 -12.25141 -12.06926 -11.90166 -11.65104 -11.23898 -11.15338 -10.99419 -10.71408 -10.06505 -10.03127 -9.39776 -9.27161 -9.07525 -8.49327 -8.27670 -6.13495 -4.16847 2.31105 2.55067 2.87692 3.10220 3.22840 3.31211 3.34633 3.57780 3.65887 4.03057 4.22183 4.35206 4.41226 4.63638 4.81718 5.09620 5.22874 5.23759 5.40164 5.47686 5.51978 5.65841 6.19089 6.24229 6.43384 6.79574 7.27203 7.45001 7.50582 7.57105 7.82564 7.83961 8.23686 8.26655 8.89367 9.48522 10.97380 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.003121 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.131613 B = 8970.025301 C = 9436.142065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.831 5.831 14 C 0.532 3.468 15 O -0.529 6.529 16 N -0.706 5.706 17 C 0.124 3.876 18 H 0.148 0.852 19 C -0.161 4.161 20 C -0.246 4.246 21 H 0.150 0.850 22 C 0.487 3.513 23 F -0.178 7.178 24 F -0.180 7.180 25 F -0.181 7.181 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.346 0.654 32 H 0.356 0.644 33 H 0.407 0.593 34 H 0.119 0.881 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -16.462 -7.296 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.117 0.883 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.403 6.403 16 N -0.358 5.358 17 C 0.017 3.983 18 H 0.165 0.835 19 C -0.199 4.199 20 C -0.267 4.267 21 H 0.167 0.833 22 C 0.433 3.567 23 F -0.159 7.159 24 F -0.162 7.162 25 F -0.162 7.162 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.242 0.758 34 H 0.137 0.863 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.594 -17.528 -6.807 20.279 hybrid contribution 0.700 1.877 -0.468 2.057 sum 8.294 -15.651 -7.275 19.149 Atomic orbital electron populations 1.69955 1.06031 1.26741 1.50398 1.25017 0.94874 0.99356 0.95081 0.86525 0.80093 0.83644 0.77690 1.19746 1.20936 1.20919 1.21206 0.93059 0.90850 1.51162 0.92640 1.19112 0.93707 0.91099 0.97430 1.22402 0.99912 0.93827 1.01612 1.21472 0.94528 0.91925 0.95928 0.88313 1.58735 1.18453 1.56021 1.03104 1.21034 0.80619 0.84378 0.82036 1.90653 1.59732 1.53080 1.36869 1.45420 1.46114 1.33349 1.10910 1.21521 0.92109 0.91398 0.93311 0.83478 1.23737 0.93827 1.00355 1.02011 1.24009 1.09067 0.88807 1.04827 0.83269 1.19432 0.73960 0.89845 0.73460 1.93226 1.59017 1.83692 1.79948 1.93190 1.96141 1.90412 1.36410 1.93174 1.45649 1.95200 1.82206 0.92889 0.96284 0.96339 0.92526 0.92481 0.84032 0.82815 0.75791 0.86264 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.55 4.74 -27.88 -0.13 0.42 16 10 C -0.14 -2.53 4.78 -26.73 -0.13 -2.66 16 11 C 0.08 1.21 3.21 -68.86 -0.22 0.99 16 12 H 0.10 1.44 8.14 -51.94 -0.42 1.02 16 13 N -0.83 -13.61 8.94 -5.66 -0.05 -13.66 16 14 C 0.53 8.10 7.08 -10.99 -0.08 8.02 16 15 O -0.53 -9.71 15.82 5.55 0.09 -9.62 16 16 N -0.71 -7.99 5.57 -53.80 -0.30 -8.29 16 17 C 0.12 1.26 6.08 -67.93 -0.41 0.84 16 18 H 0.15 1.74 7.40 -51.93 -0.38 1.35 16 19 C -0.16 -1.21 9.85 -26.73 -0.26 -1.48 16 20 C -0.25 -1.97 5.82 -90.62 -0.53 -2.49 16 21 H 0.15 0.95 8.14 -51.93 -0.42 0.52 16 22 C 0.49 4.58 3.36 37.15 0.12 4.71 16 23 F -0.18 -1.96 17.27 2.25 0.04 -1.92 16 24 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 25 F -0.18 -1.77 15.89 2.25 0.04 -1.73 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.35 5.76 8.58 -39.29 -0.34 5.42 16 32 H 0.36 5.86 7.55 -39.29 -0.30 5.56 16 33 H 0.41 3.62 8.83 -40.82 -0.36 3.26 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.12 0.84 7.22 -51.93 -0.37 0.47 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -30.71 315.77 -5.91 -36.62 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.19 Total: 8.93 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.05 Total: -4.43 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.39 Total: -46.69 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.11 Total: -5.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.71 -5.91 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602612613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.009 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds