Wall clock time and date at job start Tue Mar 31 2020 01:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48504 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 299.99700 * 3 2 1 6 6 H 1.48501 * 109.47199 * 59.99778 * 3 2 1 7 7 C 1.37881 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47283 * 180.02562 * 10 9 7 12 12 H 1.08988 * 109.47369 * 54.99534 * 11 10 9 13 13 N 1.46901 * 109.46588 * 294.99732 * 11 10 9 14 14 C 1.50696 * 109.47191 * 174.99976 * 11 10 9 15 15 O 1.21284 * 120.00199 * 99.99780 * 14 11 10 16 16 N 1.34772 * 120.00223 * 279.99762 * 14 11 10 17 17 C 1.46501 * 120.00441 * 180.02562 * 16 14 11 18 18 H 1.09002 * 115.54982 * 9.41513 * 17 16 14 19 19 C 1.53005 * 117.49876 * 223.74459 * 17 16 14 20 20 C 1.52999 * 59.99973 * 252.48587 * 19 17 16 21 21 H 1.08995 * 117.49529 * 107.48826 * 20 19 17 22 22 C 1.52995 * 117.50039 * 252.50950 * 20 19 17 23 23 F 1.39902 * 109.47480 * 128.62172 * 22 20 19 24 24 F 1.39892 * 109.47373 * 248.62400 * 22 20 19 25 25 F 1.39905 * 109.47059 * 8.62596 * 22 20 19 26 26 H 0.97004 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47352 * 60.00217 * 9 7 2 28 28 H 1.08999 * 109.47088 * 299.99656 * 9 7 2 29 29 H 1.08999 * 109.46927 * 59.99842 * 10 9 7 30 30 H 1.09007 * 109.47043 * 299.99991 * 10 9 7 31 31 H 1.00903 * 111.00205 * 299.99967 * 13 11 10 32 32 H 1.00896 * 111.00098 * 63.95589 * 13 11 10 33 33 H 0.97003 * 119.99804 * 359.97438 * 16 14 11 34 34 H 1.09004 * 117.49602 * 359.97438 * 19 17 16 35 35 H 1.09004 * 117.49360 * 144.99639 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7890 -5.0072 -0.8413 13 7 0.7271 -5.1182 1.2557 14 6 2.4549 -6.1299 -0.1214 15 8 2.7857 -6.7533 0.8650 16 7 2.9591 -6.4592 -1.3271 17 6 3.9062 -7.5705 -1.4464 18 1 4.0309 -8.1801 -0.5514 19 6 5.1343 -7.3598 -2.3343 20 6 4.0012 -8.2761 -2.8006 21 1 3.3588 -7.9136 -3.6031 22 6 4.2638 -9.7833 -2.7950 23 9 3.2316 -10.4341 -2.1107 24 9 4.3183 -10.2521 -4.1119 25 9 5.4818 -10.0421 -2.1571 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8711 -3.6039 0.8923 30 1 2.8726 -3.6047 -0.8878 31 1 1.3461 -5.1024 2.0524 32 1 0.0223 -4.4002 1.3310 33 1 2.6942 -5.9608 -2.1161 34 1 5.2372 -6.3945 -2.8301 35 1 6.0668 -7.8308 -2.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602612613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:34 Heat of formation + Delta-G solvation = -202.453745 kcal Electronic energy + Delta-G solvation = -21615.629994 eV Core-core repulsion = 17618.805375 eV Total energy + Delta-G solvation = -3996.824619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.12547 -48.66163 -48.62339 -41.10434 -38.70100 -36.99952 -34.83234 -34.11333 -31.67158 -28.51543 -27.71904 -25.85583 -23.29715 -22.70644 -22.26522 -21.32299 -19.58793 -19.39931 -19.14289 -18.46930 -17.92214 -17.50811 -16.54540 -16.02984 -15.92574 -15.73953 -15.51912 -15.45007 -15.06091 -14.84656 -14.78456 -14.75430 -14.68586 -14.47959 -14.03129 -13.64660 -13.44843 -12.96207 -12.74974 -12.70320 -12.59481 -12.46898 -11.95180 -11.78665 -11.71913 -11.26758 -10.80866 -10.55144 -9.99569 -9.63988 -8.20365 -6.30263 1.39792 1.40865 1.42626 1.53160 1.57748 1.96856 2.30886 2.41133 2.83552 2.92331 3.13858 3.27868 3.51771 3.67676 3.72286 3.76666 4.01051 4.14585 4.25534 4.54444 4.68725 4.79576 4.83014 4.86817 5.11475 5.32941 5.49368 5.68027 5.82846 6.07092 6.22823 6.43261 6.48295 6.86077 7.14570 7.39091 8.90491 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.003121 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.131613 B = 8970.025301 C = 9436.142065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.121 4.121 11 C 0.082 3.918 12 H 0.114 0.886 13 N -0.832 5.832 14 C 0.533 3.467 15 O -0.566 6.566 16 N -0.689 5.689 17 C 0.096 3.904 18 H 0.127 0.873 19 C -0.140 4.140 20 C -0.229 4.229 21 H 0.173 0.827 22 C 0.485 3.515 23 F -0.190 7.190 24 F -0.180 7.180 25 F -0.184 7.184 26 H 0.263 0.737 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.344 0.656 32 H 0.354 0.646 33 H 0.421 0.579 34 H 0.139 0.861 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -16.301 -8.708 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.033 4.033 12 H 0.132 0.868 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.443 6.443 16 N -0.340 5.340 17 C -0.011 4.011 18 H 0.144 0.856 19 C -0.178 4.178 20 C -0.249 4.249 21 H 0.190 0.810 22 C 0.430 3.570 23 F -0.171 7.171 24 F -0.162 7.162 25 F -0.166 7.166 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.259 0.741 34 H 0.157 0.843 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.855 -17.381 -8.266 21.186 hybrid contribution 0.322 1.761 -0.058 1.792 sum 9.177 -15.620 -8.324 19.937 Atomic orbital electron populations 1.70065 1.07485 1.27648 1.51516 1.25855 0.95702 1.02955 0.94858 0.85505 0.79111 0.79387 0.77682 1.18865 1.20365 1.20795 1.21662 0.93414 0.92419 1.50555 0.92569 1.18986 0.94095 0.92025 0.95798 1.22141 0.98766 0.93425 1.01723 1.21415 0.94666 0.91022 0.96169 0.86819 1.58755 1.18454 1.55768 1.03411 1.20793 0.80422 0.84011 0.82728 1.90642 1.60990 1.54344 1.38341 1.45185 1.45412 1.33325 1.10124 1.21514 0.93973 0.91741 0.93868 0.85562 1.23855 0.93090 1.01005 0.99818 1.24048 1.09454 0.87701 1.03700 0.80998 1.19656 0.73563 0.90526 0.73217 1.93205 1.59589 1.84082 1.80259 1.93190 1.96116 1.90510 1.36354 1.93169 1.45805 1.95296 1.82285 0.92796 0.97775 0.98039 0.93667 0.91015 0.84284 0.83101 0.74127 0.84322 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.22 13.29 21.45 0.28 -52.94 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -28.74 9.11 25.60 0.23 -28.51 16 8 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.31 4.74 29.85 0.14 1.46 16 10 C -0.12 -4.34 4.78 30.59 0.15 -4.19 16 11 C 0.08 2.53 3.21 44.17 0.14 2.67 16 12 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 13 N -0.83 -27.27 8.94 -171.81 -1.54 -28.80 16 14 C 0.53 15.70 7.08 87.66 0.62 16.33 16 15 O -0.57 -20.69 15.82 -3.04 -0.05 -20.74 16 16 N -0.69 -14.22 5.57 -442.53 -2.46 -16.68 16 17 C 0.10 1.78 6.08 44.99 0.27 2.05 16 18 H 0.13 2.94 7.40 -2.39 -0.02 2.92 16 19 C -0.14 -1.69 9.85 30.60 0.30 -1.39 16 20 C -0.23 -3.06 5.82 -10.79 -0.06 -3.12 16 21 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 22 C 0.48 8.31 3.36 71.98 0.24 8.55 16 23 F -0.19 -4.03 17.27 44.97 0.78 -3.26 16 24 F -0.18 -3.15 17.32 44.97 0.78 -2.37 16 25 F -0.18 -3.34 15.89 44.97 0.71 -2.63 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.34 11.56 8.58 -89.69 -0.77 10.80 16 32 H 0.35 11.78 7.55 -89.70 -0.68 11.11 16 33 H 0.42 6.26 8.83 -92.71 -0.82 5.44 16 34 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 1.43 7.22 -2.38 -0.02 1.41 16 Total: -1.00 -65.67 315.77 1.93 -63.74 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -1.11 Total: 24.78 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 2.50 Total: -5.44 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -3.71 Total: -98.42 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 2.27 Total: -8.25 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -65.67 1.93 -63.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602612613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.715 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds