Wall clock time and date at job start Tue Mar 31 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00063 * 2 1 4 4 H 1.48500 * 109.46916 * 269.99640 * 3 2 1 5 5 H 1.48497 * 109.47163 * 29.99447 * 3 2 1 6 6 H 1.48500 * 109.47294 * 150.00048 * 3 2 1 7 7 C 1.37879 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47092 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00102 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00187 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00088 * 174.35028 * 14 12 11 16 16 C 1.52996 * 112.84890 * 293.95807 * 15 14 12 17 17 F 1.39901 * 109.47114 * 65.11898 * 16 15 14 18 18 F 1.39902 * 109.47204 * 185.11520 * 16 15 14 19 19 F 1.39895 * 109.47285 * 305.11420 * 16 15 14 20 20 C 1.53776 * 113.61757 * 162.75821 * 15 14 12 21 21 C 1.54051 * 86.98783 * 270.84142 * 20 15 14 22 22 C 1.53780 * 87.07637 * 334.57129 * 21 20 15 23 23 H 0.96995 * 119.99903 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47261 * 60.00256 * 9 7 2 25 25 H 1.09001 * 109.47303 * 299.99860 * 9 7 2 26 26 H 1.08995 * 109.46619 * 60.00118 * 10 9 7 27 27 H 1.09001 * 109.47128 * 300.00207 * 10 9 7 28 28 H 0.97006 * 120.00076 * 0.02562 * 11 10 9 29 29 H 0.97000 * 120.00396 * 354.35356 * 14 12 11 30 30 H 1.09005 * 113.61082 * 25.43355 * 20 15 14 31 31 H 1.08997 * 113.61496 * 156.33379 * 20 15 14 32 32 H 1.09000 * 113.62228 * 220.01873 * 21 20 15 33 33 H 1.09006 * 113.68605 * 89.12710 * 21 20 15 34 34 H 1.09006 * 113.61010 * 270.87992 * 22 21 20 35 35 H 1.08994 * 113.61688 * 139.98069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4865 -2.6367 0.0035 12 6 6.1604 -3.8039 0.0041 13 8 5.5525 -4.8568 0.0042 14 7 7.5081 -3.8038 0.0047 15 6 8.2406 -5.0664 0.1303 16 6 8.0413 -5.7360 1.4914 17 9 6.7022 -6.1156 1.6327 18 9 8.8585 -6.8682 1.5783 19 9 8.3810 -4.8367 2.5077 20 6 9.7142 -4.9690 -0.2985 21 6 9.2396 -5.3241 -1.7203 22 6 8.0363 -6.0180 -1.0603 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8912 25 1 3.8753 -0.6805 -0.8888 26 1 3.6585 -3.1510 -0.8875 27 1 3.6578 -3.1499 0.8925 28 1 5.9716 -1.7966 0.0038 29 1 7.9932 -2.9679 -0.0780 30 1 10.1282 -3.9642 -0.2131 31 1 10.3513 -5.7300 0.1521 32 1 9.9054 -6.0096 -2.2446 33 1 8.9676 -4.4560 -2.3208 34 1 8.2155 -7.0655 -0.8177 35 1 7.0967 -5.8598 -1.5896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:33 Heat of formation + Delta-G solvation = -163.769643 kcal Electronic energy + Delta-G solvation = -22765.751176 eV Core-core repulsion = 18770.604025 eV Total energy + Delta-G solvation = -3995.147151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.03675 -47.63918 -47.36742 -40.54322 -38.47535 -34.96268 -33.46387 -32.63828 -30.04302 -28.02144 -26.28230 -24.93003 -23.27781 -21.27731 -20.77549 -19.85093 -18.40914 -18.40296 -18.19494 -17.89011 -16.85098 -16.02312 -15.34257 -15.03981 -14.53736 -14.45762 -14.29737 -14.11589 -13.98141 -13.84578 -13.67248 -13.57094 -13.35017 -13.11004 -12.78969 -12.61594 -12.45396 -11.50115 -11.36221 -11.33693 -11.15553 -10.94113 -10.40812 -10.28114 -9.99003 -9.79787 -9.34936 -9.33204 -8.64301 -8.50033 -6.11456 -4.11619 2.43058 2.72751 3.24261 3.31954 3.32112 3.33283 3.53598 3.79434 3.89789 4.21868 4.31574 4.37005 4.49127 4.62628 4.80423 5.18674 5.21416 5.23680 5.44418 5.52664 5.77206 5.81085 6.02037 6.22156 6.25485 6.56146 6.73598 6.87386 7.19921 7.23230 7.66166 8.13959 8.44168 8.75856 8.93316 9.48490 11.01641 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.003850 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.850206 B = 7270.268717 C = 7446.780468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.736 5.736 12 C 0.695 3.305 13 O -0.568 6.568 14 N -0.727 5.727 15 C 0.125 3.875 16 C 0.444 3.556 17 F -0.157 7.157 18 F -0.185 7.185 19 F -0.186 7.186 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.130 4.130 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.392 0.608 29 H 0.404 0.596 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.663 -8.729 -1.363 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.390 5.390 12 C 0.395 3.605 13 O -0.444 6.444 14 N -0.384 5.384 15 C 0.034 3.966 16 C 0.388 3.612 17 F -0.138 7.138 18 F -0.166 7.166 19 F -0.168 7.168 20 C -0.168 4.168 21 C -0.169 4.169 22 C -0.168 4.168 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.240 0.760 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.836 -9.582 -1.311 24.800 hybrid contribution 0.692 1.697 0.379 1.872 sum 23.528 -7.884 -0.932 24.832 Atomic orbital electron populations 1.69903 1.06291 1.27054 1.50397 1.24996 0.94754 0.99120 0.94378 0.86748 0.80257 0.83578 0.78451 1.20248 1.21270 1.19130 1.20908 0.88585 0.94933 1.51658 0.90564 1.19801 0.97984 0.91340 0.96802 1.21424 0.74311 0.99984 1.01679 1.45519 1.09029 1.06020 1.78451 1.16071 0.80768 0.85366 0.78322 1.90983 1.67137 1.30011 1.56290 1.44649 1.05286 1.07409 1.81093 1.22170 0.96100 0.88000 0.90348 1.20950 0.74963 0.77053 0.88209 1.93336 1.32812 1.91391 1.96263 1.93131 1.73328 1.53441 1.96725 1.93160 1.92245 1.67781 1.63580 1.23341 0.91712 1.04278 0.97443 1.22844 0.97382 1.01301 0.95374 1.23268 1.00992 0.98297 0.94269 0.92539 0.96019 0.96457 0.91981 0.91965 0.77483 0.76002 0.89422 0.87418 0.90063 0.89311 0.88377 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -11.84 5.56 -65.23 -0.36 -12.20 16 12 C 0.69 11.14 8.00 -86.92 -0.70 10.45 16 13 O -0.57 -11.26 12.80 5.29 0.07 -11.19 16 14 N -0.73 -8.28 5.08 -51.66 -0.26 -8.54 16 15 C 0.13 1.34 0.68 -131.01 -0.09 1.25 16 16 C 0.44 5.84 2.68 37.16 0.10 5.94 16 17 F -0.16 -2.67 14.49 2.25 0.03 -2.63 16 18 F -0.18 -2.16 15.71 2.25 0.04 -2.12 16 19 F -0.19 -2.51 17.24 2.25 0.04 -2.48 16 20 C -0.13 -0.88 7.28 -25.78 -0.19 -1.07 16 21 C -0.13 -0.89 8.00 -25.78 -0.21 -1.10 16 22 C -0.13 -1.31 6.81 -25.92 -0.18 -1.48 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.39 5.13 8.49 -40.82 -0.35 4.78 16 29 H 0.40 3.29 8.68 -40.82 -0.35 2.93 16 30 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.11 0.64 7.32 -51.93 -0.38 0.26 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.91 7.67 -51.93 -0.40 0.51 16 35 H 0.10 1.22 7.16 -51.93 -0.37 0.85 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -33.09 302.47 -5.93 -39.01 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.32 Total: 2.52 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.82 Total: 3.35 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.15 Total: -47.27 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.11 Total: -7.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.09 -5.93 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.757 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds