Wall clock time and date at job start Tue Mar 31 2020 01:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00063 * 2 1 4 4 H 1.48500 * 109.46916 * 269.99640 * 3 2 1 5 5 H 1.48497 * 109.47163 * 29.99447 * 3 2 1 6 6 H 1.48500 * 109.47294 * 150.00048 * 3 2 1 7 7 C 1.37879 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47092 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00102 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00187 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00088 * 174.35028 * 14 12 11 16 16 C 1.52996 * 112.84890 * 293.95807 * 15 14 12 17 17 F 1.39901 * 109.47114 * 65.11898 * 16 15 14 18 18 F 1.39902 * 109.47204 * 185.11520 * 16 15 14 19 19 F 1.39895 * 109.47285 * 305.11420 * 16 15 14 20 20 C 1.53776 * 113.61757 * 162.75821 * 15 14 12 21 21 C 1.54051 * 86.98783 * 270.84142 * 20 15 14 22 22 C 1.53780 * 87.07637 * 334.57129 * 21 20 15 23 23 H 0.96995 * 119.99903 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47261 * 60.00256 * 9 7 2 25 25 H 1.09001 * 109.47303 * 299.99860 * 9 7 2 26 26 H 1.08995 * 109.46619 * 60.00118 * 10 9 7 27 27 H 1.09001 * 109.47128 * 300.00207 * 10 9 7 28 28 H 0.97006 * 120.00076 * 0.02562 * 11 10 9 29 29 H 0.97000 * 120.00396 * 354.35356 * 14 12 11 30 30 H 1.09005 * 113.61082 * 25.43355 * 20 15 14 31 31 H 1.08997 * 113.61496 * 156.33379 * 20 15 14 32 32 H 1.09000 * 113.62228 * 220.01873 * 21 20 15 33 33 H 1.09006 * 113.68605 * 89.12710 * 21 20 15 34 34 H 1.09006 * 113.61010 * 270.87992 * 22 21 20 35 35 H 1.08994 * 113.61688 * 139.98069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4865 -2.6367 0.0035 12 6 6.1604 -3.8039 0.0041 13 8 5.5525 -4.8568 0.0042 14 7 7.5081 -3.8038 0.0047 15 6 8.2406 -5.0664 0.1303 16 6 8.0413 -5.7360 1.4914 17 9 6.7022 -6.1156 1.6327 18 9 8.8585 -6.8682 1.5783 19 9 8.3810 -4.8367 2.5077 20 6 9.7142 -4.9690 -0.2985 21 6 9.2396 -5.3241 -1.7203 22 6 8.0363 -6.0180 -1.0603 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8912 25 1 3.8753 -0.6805 -0.8888 26 1 3.6585 -3.1510 -0.8875 27 1 3.6578 -3.1499 0.8925 28 1 5.9716 -1.7966 0.0038 29 1 7.9932 -2.9679 -0.0780 30 1 10.1282 -3.9642 -0.2131 31 1 10.3513 -5.7300 0.1521 32 1 9.9054 -6.0096 -2.2446 33 1 8.9676 -4.4560 -2.3208 34 1 8.2155 -7.0655 -0.8177 35 1 7.0967 -5.8598 -1.5896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:32 Heat of formation + Delta-G solvation = -188.243483 kcal Electronic energy + Delta-G solvation = -22766.812441 eV Core-core repulsion = 18770.604025 eV Total energy + Delta-G solvation = -3996.208416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.07867 -48.63936 -48.51115 -41.57773 -39.51497 -36.57865 -34.90360 -34.28588 -31.79106 -28.99461 -26.95890 -26.72395 -24.21400 -22.78094 -22.25164 -20.74357 -19.63017 -19.40256 -19.26867 -19.04877 -18.76970 -16.96817 -16.61476 -16.32736 -16.07929 -15.52650 -15.45884 -15.38102 -15.25984 -15.05002 -14.97408 -14.71429 -14.62004 -14.56283 -14.01773 -13.42316 -13.35156 -13.24588 -13.02903 -12.19628 -12.16307 -12.04849 -11.93558 -11.75384 -11.66544 -11.50423 -11.16388 -10.77960 -10.45521 -9.91083 -8.29197 -6.36647 1.36990 1.39699 1.42891 1.53939 1.69900 2.11331 2.37763 2.74703 2.82420 3.01828 3.06015 3.18251 3.54614 3.64113 3.74930 4.16308 4.35105 4.45279 4.61587 4.69362 4.75959 4.87193 4.96623 5.05906 5.09020 5.14628 5.41768 5.42927 5.44106 5.65880 5.89621 6.23591 6.70761 7.03030 7.27847 7.52121 8.87797 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.003850 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.850206 B = 7270.268717 C = 7446.780468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.166 3.834 11 N -0.727 5.727 12 C 0.693 3.307 13 O -0.610 6.610 14 N -0.706 5.706 15 C 0.112 3.888 16 C 0.435 3.565 17 F -0.186 7.186 18 F -0.177 7.177 19 F -0.189 7.189 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.139 4.139 23 H 0.268 0.732 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.411 0.589 29 H 0.424 0.576 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.607 -7.014 -1.887 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.049 4.049 10 C 0.042 3.958 11 N -0.383 5.383 12 C 0.393 3.607 13 O -0.489 6.489 14 N -0.364 5.364 15 C 0.021 3.979 16 C 0.379 3.621 17 F -0.168 7.168 18 F -0.158 7.158 19 F -0.171 7.171 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.178 4.178 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.247 0.753 29 H 0.263 0.737 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 26.865 -7.856 -1.838 28.050 hybrid contribution -0.588 1.009 0.573 1.301 sum 26.277 -6.847 -1.266 27.183 Atomic orbital electron populations 1.70081 1.08649 1.28438 1.52007 1.26091 0.95675 1.03906 0.93638 0.85517 0.79618 0.77214 0.79374 1.18807 1.21403 1.15973 1.21252 0.91625 0.93354 1.51565 0.95421 1.19643 0.94308 0.92818 0.98121 1.20874 0.76917 0.98278 0.99763 1.45096 1.07292 1.07211 1.78680 1.16212 0.82167 0.84447 0.77883 1.90969 1.68515 1.31502 1.57870 1.44373 1.03552 1.08920 1.79568 1.22610 0.98928 0.87543 0.88813 1.21456 0.73802 0.77462 0.89336 1.93279 1.35264 1.91746 1.96492 1.93139 1.72783 1.53122 1.96765 1.93147 1.92114 1.67815 1.64016 1.23414 0.88675 1.06329 0.96469 1.22822 0.95597 1.01349 0.95581 1.23339 1.01191 0.98885 0.94384 0.92338 0.94607 0.94327 0.93750 0.94406 0.75250 0.73673 0.86775 0.86145 0.87878 0.88841 0.88069 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.96 42.00 27.47 68.60 1.88 43.89 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 7 C -0.54 -30.85 9.66 25.60 0.25 -30.60 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 10 C 0.17 6.80 5.61 86.38 0.48 7.28 16 11 N -0.73 -22.37 5.56 -478.54 -2.66 -25.03 16 12 C 0.69 21.72 8.00 179.06 1.43 23.15 16 13 O -0.61 -24.75 12.80 -3.99 -0.05 -24.80 16 14 N -0.71 -14.55 5.08 -435.61 -2.21 -16.76 16 15 C 0.11 2.18 0.68 4.13 0.00 2.18 16 16 C 0.44 11.03 2.68 71.98 0.19 11.23 16 17 F -0.19 -6.48 14.49 44.97 0.65 -5.83 16 18 F -0.18 -3.89 15.71 44.97 0.71 -3.18 16 19 F -0.19 -4.85 17.24 44.97 0.78 -4.07 16 20 C -0.11 -1.05 7.28 31.21 0.23 -0.83 16 21 C -0.12 -1.17 8.00 31.21 0.25 -0.92 16 22 C -0.14 -2.64 6.81 31.12 0.21 -2.42 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.04 1.49 7.20 -2.38 -0.02 1.47 16 25 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.41 9.46 8.49 -92.70 -0.79 8.68 16 29 H 0.42 5.34 8.68 -92.71 -0.80 4.54 16 30 H 0.11 0.55 8.09 -2.38 -0.02 0.53 16 31 H 0.12 0.92 7.32 -2.39 -0.02 0.90 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.10 1.80 7.67 -2.38 -0.02 1.78 16 35 H 0.06 1.66 7.16 -2.39 -0.02 1.64 16 Total: -1.00 -75.99 302.47 2.52 -73.47 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.51 Total: 12.13 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 3.64 Total: 9.39 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -4.57 Total: -101.00 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 9 Polarization: -15.22 SS G_CDS: 2.13 Total: -13.08 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -75.99 2.52 -73.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.771 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds