Wall clock time and date at job start Tue Mar 31 2020 01:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46949 * 269.99968 * 3 2 1 5 5 H 1.48504 * 109.47300 * 29.99358 * 3 2 1 6 6 H 1.48501 * 109.47374 * 149.99591 * 3 2 1 7 7 C 1.38946 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00446 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99644 * 179.73035 * 7 2 1 10 10 C 1.34780 * 119.99820 * 180.27462 * 9 7 2 11 11 O 1.21295 * 120.00017 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00180 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47250 * 173.80231 * 12 10 9 14 14 C 1.47010 * 111.00089 * 293.64494 * 13 12 10 15 15 C 1.53093 * 109.26078 * 177.60694 * 14 13 12 16 16 O 1.43018 * 109.25722 * 56.85129 * 15 14 13 17 17 C 1.43013 * 113.73841 * 301.33108 * 16 15 14 18 18 C 1.47016 * 110.99624 * 170.01368 * 13 12 10 19 19 H 1.08995 * 109.51052 * 62.46230 * 18 13 12 20 20 C 1.50702 * 109.50813 * 302.32481 * 18 13 12 21 21 C 1.34509 * 125.79104 * 140.00400 * 20 18 13 22 22 C 1.41379 * 106.84492 * 180.02562 * 21 20 18 23 23 C 1.34509 * 106.83754 * 0.02562 * 22 21 20 24 24 O 1.34303 * 125.78921 * 319.69807 * 20 18 13 25 25 H 0.97002 * 120.00448 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00729 * 0.27312 * 9 7 2 27 27 H 1.09001 * 109.47660 * 293.80859 * 12 10 9 28 28 H 1.09006 * 109.46925 * 53.80486 * 12 10 9 29 29 H 1.09003 * 109.51009 * 297.54293 * 14 13 12 30 30 H 1.09009 * 109.50684 * 57.67334 * 14 13 12 31 31 H 1.09003 * 109.51306 * 176.78713 * 15 14 13 32 32 H 1.09004 * 109.50623 * 296.87513 * 15 14 13 33 33 H 1.08996 * 109.51106 * 178.60280 * 17 16 15 34 34 H 1.09006 * 109.50498 * 298.69213 * 17 16 15 35 35 H 1.08003 * 126.57590 * 359.96426 * 21 20 18 36 36 H 1.07991 * 126.58452 * 179.97438 * 22 21 20 37 37 H 1.08007 * 125.79327 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2032 -0.0050 10 6 4.0537 -2.3704 -0.0101 11 8 3.4472 -3.4209 -0.0102 12 6 5.5607 -2.3705 -0.0168 13 7 6.0510 -3.7476 0.1281 14 6 5.7136 -4.2905 1.4519 15 6 6.1890 -5.7432 1.5382 16 8 7.5934 -5.7964 1.2732 17 6 7.9575 -5.2762 -0.0083 18 6 7.5000 -3.8187 -0.1102 19 1 8.0215 -3.2205 0.6369 20 6 7.8103 -3.2889 -1.4865 21 6 8.8605 -2.5145 -1.8130 22 6 8.7618 -2.2534 -3.1990 23 6 7.6568 -2.8834 -3.6364 24 8 7.0883 -3.5147 -2.5962 25 1 -0.4851 0.8400 -0.0004 26 1 3.8648 -0.3632 -0.0054 27 1 5.9199 -1.9540 -0.9579 28 1 5.9277 -1.7650 0.8120 29 1 6.2066 -3.6997 2.2241 30 1 4.6339 -4.2516 1.5969 31 1 5.9922 -6.1319 2.5374 32 1 5.6559 -6.3449 0.8020 33 1 9.0397 -5.3271 -0.1276 34 1 7.4770 -5.8647 -0.7899 35 1 9.6308 -2.1594 -1.1444 36 1 9.4424 -1.6611 -3.7924 37 1 7.2920 -2.8864 -4.6530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609739822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:30 Heat of formation + Delta-G solvation = -40.648476 kcal Electronic energy + Delta-G solvation = -22418.407214 eV Core-core repulsion = 18970.455739 eV Total energy + Delta-G solvation = -3447.951476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61599 -39.70184 -38.16780 -35.54426 -33.94184 -33.08708 -32.05547 -31.68887 -29.34520 -28.29326 -25.69145 -24.15051 -23.59086 -21.85182 -21.03455 -19.95345 -19.38287 -18.34393 -17.53809 -16.65297 -16.17155 -15.83716 -15.59635 -15.23292 -15.04932 -14.92374 -14.26564 -14.01309 -13.70127 -13.42915 -13.14291 -12.82340 -12.65758 -12.52495 -12.23224 -12.08210 -11.91389 -11.46472 -11.27969 -11.01825 -10.60716 -10.60444 -9.99935 -9.97381 -9.80327 -9.55327 -8.62717 -8.47999 -8.20146 -8.10953 -6.32358 -3.83662 1.70312 2.55439 2.97186 3.01505 3.06054 3.13905 3.66503 3.71791 3.81702 4.09108 4.52289 4.71174 4.80285 4.94136 5.01786 5.07796 5.13411 5.18927 5.27674 5.36100 5.58407 5.65199 5.68315 5.72626 5.75717 5.83957 5.91071 6.01301 6.05165 6.14148 6.42461 6.90429 6.99512 7.12244 7.24214 7.56698 8.12698 8.58799 8.93699 9.41015 9.81559 10.80697 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.005544 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.923781 B = 5048.942998 C = 6144.634428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.455 3.545 11 O -0.557 6.557 12 C 0.044 3.956 13 N -0.504 5.504 14 C 0.017 3.983 15 C 0.063 3.937 16 O -0.385 6.385 17 C 0.075 3.925 18 C 0.127 3.873 19 H 0.077 0.923 20 C 0.002 3.998 21 C -0.210 4.210 22 C -0.219 4.219 23 C -0.038 4.038 24 O -0.152 6.152 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.206 -4.148 -1.841 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.230 5.230 10 C 0.240 3.760 11 O -0.439 6.439 12 C -0.087 4.087 13 N -0.230 5.230 14 C -0.111 4.111 15 C -0.013 4.013 16 O -0.303 6.303 17 C -0.003 4.003 18 C 0.018 3.982 19 H 0.094 0.906 20 C -0.049 4.049 21 C -0.230 4.230 22 C -0.238 4.238 23 C -0.106 4.106 24 O -0.046 6.046 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 18.198 -5.298 -2.055 19.064 hybrid contribution 0.961 2.444 0.189 2.633 sum 19.158 -2.854 -1.866 19.459 Atomic orbital electron populations 1.69617 1.05608 1.27491 1.49362 1.25022 0.95475 0.97920 0.97649 0.86697 0.79776 0.84142 0.78942 1.19592 1.20120 1.19565 1.19424 0.79131 0.96642 1.48067 0.86211 1.42208 1.07556 1.06090 1.67141 1.19519 0.87778 0.84610 0.84057 1.90539 1.69232 1.30750 1.53382 1.21932 0.95925 0.88984 1.01870 1.61835 1.09900 1.20466 1.30754 1.22967 1.04517 0.95507 0.88060 1.22743 0.80834 0.95744 1.01995 1.87963 1.24595 1.82865 1.34909 1.22640 1.00359 0.90846 0.86408 1.20905 0.90581 0.98145 0.88610 0.90573 1.22044 0.93101 1.01956 0.87844 1.21554 1.00977 1.04051 0.96437 1.21761 1.00529 1.06163 0.95335 1.24148 0.95513 0.98424 0.92545 1.84185 1.46833 1.57988 1.15629 0.91604 0.79767 0.89133 0.93279 0.94475 0.86801 0.88237 0.91660 0.88228 0.91653 0.83608 0.83577 0.78210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.50 27.73 -169.99 -4.71 14.79 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 9 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 10 C 0.45 10.48 7.35 -10.98 -0.08 10.40 16 11 O -0.56 -14.83 14.25 5.54 0.08 -14.75 16 12 C 0.04 0.78 5.27 -4.98 -0.03 0.76 16 13 N -0.50 -8.38 4.22 -229.15 -0.97 -9.34 16 14 C 0.02 0.26 5.30 -3.72 -0.02 0.25 16 15 C 0.06 0.85 7.01 37.21 0.26 1.11 16 16 O -0.38 -5.18 10.83 -35.23 -0.38 -5.56 16 17 C 0.07 0.92 6.27 37.21 0.23 1.15 16 18 C 0.13 1.70 2.44 -68.75 -0.17 1.53 16 19 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 20 C 0.00 0.03 4.48 -35.63 -0.16 -0.13 16 21 C -0.21 -2.44 10.80 -39.71 -0.43 -2.87 16 22 C -0.22 -2.38 10.91 -39.71 -0.43 -2.81 16 23 C -0.04 -0.44 12.09 29.41 0.36 -0.08 16 24 O -0.15 -2.27 10.41 5.71 0.06 -2.21 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 26 H 0.37 7.92 5.77 -40.82 -0.24 7.69 16 27 H 0.09 1.56 6.50 -51.93 -0.34 1.23 16 28 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 2.12 6.10 -51.92 -0.32 1.80 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -33.13 310.01 -5.92 -39.05 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.67 Total: 11.01 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.71 Total: 1.61 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.25 Total: -48.60 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.24 Total: -22.53 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.13 -5.92 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609739822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.596 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds