Wall clock time and date at job start Tue Mar 31 2020 01:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86791 * 120.00508 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47450 * 300.00231 * 3 2 1 6 6 H 1.48506 * 109.46957 * 60.00377 * 3 2 1 7 7 C 1.38635 * 119.99187 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99290 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00495 * 359.97438 * 7 2 1 10 10 C 1.35772 * 116.99868 * 185.41455 * 9 7 2 11 11 C 1.38907 * 120.00099 * 5.91545 * 10 9 7 12 12 C 1.38009 * 119.99922 * 179.97438 * 11 10 9 13 13 C 1.38918 * 120.00071 * 0.02562 * 12 11 10 14 14 N 1.39991 * 119.99964 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99902 * 33.69440 * 14 13 12 16 16 O 1.21295 * 120.00374 * 5.19647 * 15 14 13 17 17 C 1.50700 * 119.99731 * 185.20777 * 15 14 13 18 18 C 1.53004 * 109.47176 * 179.97438 * 17 15 14 19 19 H 1.09007 * 109.46567 * 304.99848 * 18 17 15 20 20 O 1.42898 * 109.47178 * 64.99407 * 18 17 15 21 21 C 1.52995 * 109.47239 * 184.99823 * 18 17 15 22 22 N 1.46904 * 109.46947 * 179.97438 * 21 18 17 23 23 C 1.38921 * 119.99705 * 0.27844 * 13 12 11 24 24 C 1.38006 * 119.99573 * 359.46322 * 23 13 12 25 25 H 0.97005 * 119.99627 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00208 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.99867 * 179.97438 * 12 11 10 28 28 H 0.97000 * 120.00104 * 213.68083 * 14 13 12 29 29 H 1.09005 * 109.47103 * 299.98983 * 17 15 14 30 30 H 1.08995 * 109.47675 * 59.99468 * 17 15 14 31 31 H 0.96696 * 113.99717 * 60.00478 * 20 18 17 32 32 H 1.08995 * 109.47123 * 299.99243 * 21 18 17 33 33 H 1.09002 * 109.47169 * 60.00157 * 21 18 17 34 34 H 1.00901 * 110.99544 * 179.97438 * 22 21 18 35 35 H 1.00897 * 111.00280 * 303.95601 * 22 21 18 36 36 H 1.07997 * 120.00108 * 179.69422 * 23 13 12 37 37 H 1.08002 * 120.00129 * 180.25038 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7098 1.3461 -0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3682 -0.0005 10 6 2.0694 -3.5043 0.1131 11 6 3.4367 -3.4267 0.3456 12 6 4.1835 -4.5815 0.4617 13 6 3.5679 -5.8214 0.3453 14 7 4.3255 -6.9927 0.4625 15 6 5.3823 -7.0310 1.2980 16 8 5.6210 -6.0844 2.0178 17 6 6.2675 -8.2499 1.3379 18 6 7.3843 -8.0359 2.3616 19 1 7.9209 -7.1165 2.1269 20 8 6.8186 -7.9366 3.6700 21 6 8.3537 -9.2186 2.3135 22 7 9.4263 -9.0128 3.2960 23 6 2.2016 -5.8988 0.1064 24 6 1.4540 -4.7441 -0.0042 25 1 -0.4850 0.8401 0.0004 26 1 3.9153 -2.4628 0.4357 27 1 5.2466 -4.5212 0.6421 28 1 4.0898 -7.7769 -0.0576 29 1 5.6755 -9.1199 1.6223 30 1 6.7045 -8.4141 0.3529 31 1 6.3253 -8.7212 3.9458 32 1 7.8172 -10.1379 2.5482 33 1 8.7853 -9.2943 1.3155 34 1 10.0800 -9.7814 3.2840 35 1 9.8974 -8.1346 3.1385 36 1 1.7238 -6.8627 0.0111 37 1 0.3911 -4.8042 -0.1859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703402156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:28 Heat of formation + Delta-G solvation = -84.708332 kcal Electronic energy + Delta-G solvation = -20984.170171 eV Core-core repulsion = 17534.308116 eV Total energy + Delta-G solvation = -3449.862055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22640 -38.81055 -37.73936 -36.34524 -34.08481 -33.89648 -32.19499 -31.29099 -30.18826 -28.04243 -25.94216 -25.11367 -22.54406 -22.01021 -21.27421 -19.99059 -18.14961 -17.62230 -16.97123 -16.74818 -16.52550 -15.91588 -15.73551 -14.98732 -14.49427 -14.38489 -14.22568 -13.77520 -13.56309 -13.52973 -13.29090 -12.85307 -12.67227 -12.52879 -12.09594 -11.69217 -11.52493 -11.47810 -11.14771 -11.00260 -10.73780 -10.40340 -10.24765 -9.71159 -9.56088 -9.22401 -9.03902 -8.67343 -8.19403 -6.90330 -6.42863 -4.00211 2.09804 2.21790 2.90011 3.15488 3.17019 3.22551 3.24241 3.99500 4.02206 4.34212 4.46405 4.57983 4.62462 4.82129 4.98031 5.09262 5.12598 5.20277 5.26100 5.27557 5.68189 5.74796 5.79849 6.16244 6.19578 6.34970 6.68780 6.74401 6.86830 7.01705 7.02609 7.12470 7.31074 7.45350 7.63102 7.71329 7.80802 8.02390 8.42683 9.03184 9.72833 10.75277 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.003168 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.642884 B = 8836.481824 C = 9548.758810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.145 3.855 11 C -0.218 4.218 12 C -0.065 4.065 13 C 0.037 3.963 14 N -0.665 5.665 15 C 0.503 3.497 16 O -0.507 6.507 17 C -0.174 4.174 18 C 0.126 3.874 19 H 0.102 0.898 20 O -0.531 6.531 21 C 0.029 3.971 22 N -0.842 5.842 23 C -0.095 4.095 24 C -0.178 4.178 25 H 0.269 0.731 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.400 0.600 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.366 0.634 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.340 0.660 35 H 0.344 0.656 36 H 0.114 0.886 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 -19.142 -0.148 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.091 3.909 11 C -0.238 4.238 12 C -0.085 4.085 13 C -0.055 4.055 14 N -0.311 5.311 15 C 0.289 3.711 16 O -0.381 6.381 17 C -0.215 4.215 18 C 0.065 3.935 19 H 0.120 0.880 20 O -0.334 6.334 21 C -0.103 4.103 22 N -0.372 5.372 23 C -0.115 4.115 24 C -0.197 4.197 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.137 0.863 28 H 0.234 0.766 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.212 0.788 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.147 -17.667 0.878 22.039 hybrid contribution 0.716 -0.284 -1.200 1.426 sum 13.863 -17.951 -0.321 22.683 Atomic orbital electron populations 1.70059 1.05944 1.27536 1.46261 1.25290 0.95857 0.98843 0.96583 0.85645 0.79216 0.80361 0.78222 1.19050 1.20171 1.20123 1.21376 0.91841 0.80844 1.52492 0.89029 1.83988 1.34203 1.11435 1.78430 1.19409 0.90389 0.88082 0.92991 1.21094 0.94156 0.98685 1.09819 1.20692 0.99404 0.90568 0.97799 1.17239 0.90371 0.85457 1.12417 1.43281 1.30014 1.14240 1.43527 1.20438 0.81636 0.89295 0.79754 1.90787 1.70590 1.37264 1.39456 1.22429 0.98523 0.97805 1.02767 1.21603 0.90969 0.98206 0.82706 0.87993 1.86775 1.72419 1.43039 1.31157 1.22542 0.94565 0.99318 0.93854 1.58508 1.16795 1.07629 1.54274 1.20343 0.91328 0.97454 1.02382 1.19992 0.99769 0.89581 1.10403 0.92094 0.85202 0.86325 0.76635 0.88594 0.88176 0.78844 0.90696 0.94720 0.84745 0.84318 0.86794 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.08 9.44 30.88 0.29 -10.78 16 8 H 0.09 2.44 5.29 -52.48 -0.28 2.16 16 9 O -0.18 -5.12 9.75 0.02 0.00 -5.12 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.22 -5.02 9.13 -39.42 -0.36 -5.38 16 12 C -0.06 -1.33 8.65 -39.41 -0.34 -1.67 16 13 C 0.04 0.67 6.28 -83.63 -0.52 0.15 16 14 N -0.67 -8.83 5.34 -9.82 -0.05 -8.88 16 15 C 0.50 6.86 7.45 -10.99 -0.08 6.78 16 16 O -0.51 -9.50 13.13 -8.88 -0.12 -9.62 16 17 C -0.17 -1.40 5.38 -27.88 -0.15 -1.55 16 18 C 0.13 1.18 2.72 -26.73 -0.07 1.11 16 19 H 0.10 1.16 7.96 -51.92 -0.41 0.75 16 20 O -0.53 -6.46 12.44 -49.66 -0.62 -7.08 16 21 C 0.03 0.19 6.45 -3.82 -0.02 0.16 16 22 N -0.84 -6.11 9.49 -10.37 -0.10 -6.21 16 23 C -0.09 -1.67 9.96 -39.41 -0.39 -2.06 16 24 C -0.18 -3.74 9.98 -39.42 -0.39 -4.14 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.13 3.02 5.71 -52.49 -0.30 2.72 16 27 H 0.12 2.40 6.44 -52.49 -0.34 2.06 16 28 H 0.40 3.65 8.82 -40.82 -0.36 3.29 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.37 3.08 9.04 45.56 0.41 3.50 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.34 1.76 9.08 -39.29 -0.36 1.40 16 35 H 0.34 2.43 8.99 -39.29 -0.35 2.08 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -36.14 320.58 -6.38 -42.52 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.66 Total: 11.55 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.41 Total: -13.09 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.61 Total: -39.91 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.73 Total: -21.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.14 -6.38 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703402156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.191 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds