Wall clock time and date at job start Tue Mar 31 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86791 * 120.00508 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47450 * 300.00231 * 3 2 1 6 6 H 1.48506 * 109.46957 * 60.00377 * 3 2 1 7 7 C 1.38635 * 119.99187 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99290 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00495 * 359.97438 * 7 2 1 10 10 C 1.35772 * 116.99868 * 185.41455 * 9 7 2 11 11 C 1.38907 * 120.00099 * 5.91545 * 10 9 7 12 12 C 1.38009 * 119.99922 * 179.97438 * 11 10 9 13 13 C 1.38918 * 120.00071 * 0.02562 * 12 11 10 14 14 N 1.39991 * 119.99964 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99902 * 33.69440 * 14 13 12 16 16 O 1.21295 * 120.00374 * 5.19647 * 15 14 13 17 17 C 1.50700 * 119.99731 * 185.20777 * 15 14 13 18 18 C 1.53004 * 109.47176 * 179.97438 * 17 15 14 19 19 H 1.09007 * 109.46567 * 304.99848 * 18 17 15 20 20 O 1.42898 * 109.47178 * 64.99407 * 18 17 15 21 21 C 1.52995 * 109.47239 * 184.99823 * 18 17 15 22 22 N 1.46904 * 109.46947 * 179.97438 * 21 18 17 23 23 C 1.38921 * 119.99705 * 0.27844 * 13 12 11 24 24 C 1.38006 * 119.99573 * 359.46322 * 23 13 12 25 25 H 0.97005 * 119.99627 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00208 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.99867 * 179.97438 * 12 11 10 28 28 H 0.97000 * 120.00104 * 213.68083 * 14 13 12 29 29 H 1.09005 * 109.47103 * 299.98983 * 17 15 14 30 30 H 1.08995 * 109.47675 * 59.99468 * 17 15 14 31 31 H 0.96696 * 113.99717 * 60.00478 * 20 18 17 32 32 H 1.08995 * 109.47123 * 299.99243 * 21 18 17 33 33 H 1.09002 * 109.47169 * 60.00157 * 21 18 17 34 34 H 1.00901 * 110.99544 * 179.97438 * 22 21 18 35 35 H 1.00897 * 111.00280 * 303.95601 * 22 21 18 36 36 H 1.07997 * 120.00108 * 179.69422 * 23 13 12 37 37 H 1.08002 * 120.00129 * 180.25038 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7098 1.3461 -0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3682 -0.0005 10 6 2.0694 -3.5043 0.1131 11 6 3.4367 -3.4267 0.3456 12 6 4.1835 -4.5815 0.4617 13 6 3.5679 -5.8214 0.3453 14 7 4.3255 -6.9927 0.4625 15 6 5.3823 -7.0310 1.2980 16 8 5.6210 -6.0844 2.0178 17 6 6.2675 -8.2499 1.3379 18 6 7.3843 -8.0359 2.3616 19 1 7.9209 -7.1165 2.1269 20 8 6.8186 -7.9366 3.6700 21 6 8.3537 -9.2186 2.3135 22 7 9.4263 -9.0128 3.2960 23 6 2.2016 -5.8988 0.1064 24 6 1.4540 -4.7441 -0.0042 25 1 -0.4850 0.8401 0.0004 26 1 3.9153 -2.4628 0.4357 27 1 5.2466 -4.5212 0.6421 28 1 4.0898 -7.7769 -0.0576 29 1 5.6755 -9.1199 1.6223 30 1 6.7045 -8.4141 0.3529 31 1 6.3253 -8.7212 3.9458 32 1 7.8172 -10.1379 2.5482 33 1 8.7853 -9.2943 1.3155 34 1 10.0800 -9.7814 3.2840 35 1 9.8974 -8.1346 3.1385 36 1 1.7238 -6.8627 0.0111 37 1 0.3911 -4.8042 -0.1859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703402156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:27 Heat of formation + Delta-G solvation = -116.059259 kcal Electronic energy + Delta-G solvation = -20985.529649 eV Core-core repulsion = 17534.308116 eV Total energy + Delta-G solvation = -3451.221533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50881 -40.41961 -38.78602 -37.84720 -35.34961 -34.68244 -34.18294 -32.16709 -31.84362 -29.52885 -27.41073 -26.47058 -24.02629 -23.27110 -22.38296 -21.23892 -19.97165 -19.19043 -18.22380 -17.92196 -17.51800 -16.92950 -16.50746 -16.30983 -16.11147 -15.66495 -15.49127 -15.36926 -15.03698 -14.67504 -14.60531 -14.30967 -13.89521 -13.60838 -13.37245 -13.22095 -13.10888 -12.75443 -12.62446 -12.47548 -12.12384 -11.83594 -11.36899 -11.15770 -11.00607 -10.76659 -10.49217 -9.85103 -9.52563 -8.58830 -8.48624 -6.14993 0.50629 0.54679 1.33808 1.40819 1.51886 1.75195 2.15171 2.18316 2.81467 3.14756 3.41101 3.50529 3.65377 3.76516 4.01623 4.07621 4.10740 4.19617 4.45267 4.48020 4.52725 4.62992 4.66698 4.76879 4.81328 5.06601 5.12060 5.15091 5.34302 5.44042 5.60235 5.69399 6.00930 6.17356 6.22787 6.59270 6.61865 6.96406 7.02413 7.34884 7.76082 8.74689 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.003168 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.642884 B = 8836.481824 C = 9548.758810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.228 6.228 10 C 0.104 3.896 11 C -0.228 4.228 12 C -0.078 4.078 13 C 0.066 3.934 14 N -0.653 5.653 15 C 0.499 3.501 16 O -0.563 6.563 17 C -0.157 4.157 18 C 0.121 3.879 19 H 0.072 0.928 20 O -0.565 6.565 21 C 0.037 3.963 22 N -0.860 5.860 23 C -0.080 4.080 24 C -0.180 4.180 25 H 0.273 0.727 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.427 0.573 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.379 0.621 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.351 0.649 35 H 0.341 0.659 36 H 0.168 0.832 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.260 -22.698 -0.704 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.113 0.887 9 O -0.134 6.134 10 C 0.053 3.947 11 C -0.248 4.248 12 C -0.099 4.099 13 C -0.028 4.028 14 N -0.301 5.301 15 C 0.288 3.712 16 O -0.440 6.440 17 C -0.198 4.198 18 C 0.061 3.939 19 H 0.090 0.910 20 O -0.371 6.371 21 C -0.094 4.094 22 N -0.391 5.391 23 C -0.100 4.100 24 C -0.199 4.199 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.266 0.734 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.227 0.773 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.780 -21.343 0.299 25.963 hybrid contribution 0.371 0.436 -0.974 1.129 sum 15.151 -20.908 -0.675 25.829 Atomic orbital electron populations 1.70185 1.07840 1.28745 1.48851 1.26535 0.96890 1.02565 0.95883 0.84557 0.78048 0.75029 0.78748 1.17993 1.18883 1.19288 1.21781 0.92301 0.81646 1.53141 0.88713 1.83943 1.35531 1.12431 1.81543 1.19940 0.91176 0.88408 0.95162 1.21078 0.94007 0.99182 1.10553 1.20774 0.99392 0.91134 0.98571 1.17412 0.90989 0.86326 1.08068 1.43264 1.29424 1.13465 1.43898 1.21548 0.81251 0.90242 0.78160 1.90789 1.71696 1.39832 1.41668 1.22434 0.97267 0.95727 1.04324 1.21654 0.91846 0.98302 0.82080 0.91040 1.86733 1.73058 1.44540 1.32791 1.22465 0.93807 0.98356 0.94756 1.58520 1.17487 1.08078 1.55011 1.20801 0.90877 0.98400 0.99890 1.20354 1.00668 0.89382 1.09531 0.91758 0.86823 0.86307 0.73439 0.84702 0.84566 0.77259 0.88929 0.92743 0.83470 0.84613 0.81425 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.18 13.67 21.61 0.30 -56.88 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.41 -24.90 9.44 67.91 0.64 -24.26 16 8 H 0.10 5.39 5.29 -2.91 -0.02 5.38 16 9 O -0.23 -14.02 9.75 -22.85 -0.22 -14.24 16 10 C 0.10 5.34 6.65 22.59 0.15 5.49 16 11 C -0.23 -10.99 9.13 22.38 0.20 -10.78 16 12 C -0.08 -3.22 8.65 22.38 0.19 -3.03 16 13 C 0.07 2.18 6.28 38.16 0.24 2.42 16 14 N -0.65 -14.47 5.34 -303.38 -1.62 -16.09 16 15 C 0.50 11.99 7.45 87.66 0.65 12.64 16 16 O -0.56 -20.52 13.13 10.72 0.14 -20.38 16 17 C -0.16 -1.77 5.38 29.85 0.16 -1.60 16 18 C 0.12 1.96 2.72 30.59 0.08 2.05 16 19 H 0.07 1.58 7.96 -2.38 -0.02 1.56 16 20 O -0.57 -12.85 12.44 -135.19 -1.68 -14.53 16 21 C 0.04 0.35 6.45 86.30 0.56 0.91 16 22 N -0.86 -10.67 9.49 -186.72 -1.77 -12.44 16 23 C -0.08 -2.55 9.96 22.38 0.22 -2.33 16 24 C -0.18 -7.50 9.98 22.38 0.22 -7.28 16 25 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.11 5.69 5.71 -2.91 -0.02 5.67 16 27 H 0.12 4.86 6.44 -2.91 -0.02 4.84 16 28 H 0.43 5.16 8.82 -92.71 -0.82 4.35 16 29 H 0.14 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.38 5.50 9.04 -74.06 -0.67 4.83 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.35 2.82 9.08 -89.69 -0.81 2.01 16 35 H 0.34 4.44 8.99 -89.70 -0.81 3.64 16 36 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -86.50 320.58 -0.99 -87.49 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.95 Total: 27.14 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.79 Total: -26.54 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.10 Total: -85.41 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.76 Total: -49.15 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -86.50 -0.99 -87.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703402156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.572 kcal (2) G-P(sol) polarization free energy of solvation -86.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds