Wall clock time and date at job start Tue Mar 31 2020 01:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34437 * 125.45599 * 2 1 4 4 C 1.46742 * 106.37134 * 179.97438 * 3 2 1 5 5 C 1.47107 * 127.02135 * 180.02562 * 4 3 2 6 6 O 1.21549 * 119.99923 * 179.97438 * 5 4 3 7 7 O 1.34782 * 120.00253 * 359.97367 * 5 4 3 8 8 C 1.45200 * 117.00281 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47306 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99877 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00106 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00043 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99635 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99660 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00426 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99529 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47402 * 59.99980 * 16 14 12 18 18 H 1.48507 * 109.47112 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46746 * 299.99564 * 16 14 12 20 20 C 1.37844 * 105.95473 * 0.02562 * 4 3 2 21 21 C 1.50698 * 125.89893 * 180.02562 * 20 4 3 22 22 N 1.34627 * 108.20272 * 359.75432 * 20 4 3 23 23 C 1.46501 * 124.80573 * 180.25650 * 22 20 4 24 24 H 1.09002 * 109.47152 * 90.02370 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02470 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02451 * 1 2 3 27 27 H 1.07999 * 126.81350 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47283 * 300.00172 * 8 7 5 29 29 H 1.08995 * 109.47181 * 59.99996 * 8 7 5 30 30 H 0.97006 * 120.00048 * 0.02562 * 11 9 8 31 31 H 0.97000 * 120.00225 * 180.02562 * 15 14 12 32 32 H 1.09004 * 109.47360 * 89.97198 * 21 20 4 33 33 H 1.08994 * 109.47020 * 209.97995 * 21 20 4 34 34 H 1.09009 * 109.46745 * 329.97387 * 21 20 4 35 35 H 1.09001 * 109.47020 * 270.19722 * 23 22 20 36 36 H 1.08995 * 109.47338 * 30.19900 * 23 22 20 37 37 H 1.09003 * 109.46892 * 150.19683 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2869 1.0951 0.0000 4 6 3.6736 0.6153 0.0006 5 6 4.8947 1.4356 0.0014 6 8 5.9862 0.9008 0.0023 7 8 4.8033 2.7803 0.0010 8 6 6.0492 3.5259 0.0012 9 6 5.7508 5.0031 0.0014 10 8 4.6011 5.3895 0.0018 11 7 6.7614 5.8947 0.0021 12 6 6.4899 7.2386 0.0018 13 1 5.4662 7.5826 0.0013 14 6 7.5319 8.1578 0.0020 15 7 8.7775 7.7392 0.0020 16 14 7.1619 9.9888 0.0022 17 1 6.3776 10.3353 1.2146 18 1 8.4363 10.7514 0.0018 19 1 6.3779 10.3355 -1.2104 20 6 3.5984 -0.7611 0.0004 21 6 4.7690 -1.7101 0.0014 22 7 2.2984 -1.1112 0.0051 23 6 1.8038 -2.4902 0.0118 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.9580 2.1238 0.0004 28 1 6.6246 3.2717 0.8915 29 1 6.6251 3.2713 -0.8885 30 1 7.6809 5.5857 0.0022 31 1 9.5048 8.3809 0.0026 32 1 5.0507 -1.9387 1.0293 33 1 4.4912 -2.6302 -0.5125 34 1 5.6121 -1.2475 -0.5121 35 1 1.6818 -2.8374 -1.0142 36 1 2.5185 -3.1300 0.5294 37 1 0.8431 -2.5290 0.5253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:57 Heat of formation + Delta-G solvation = -80.039003 kcal Electronic energy + Delta-G solvation = -21045.729030 eV Core-core repulsion = 17596.069453 eV Total energy + Delta-G solvation = -3449.659577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53849 -39.64060 -37.94717 -35.77696 -33.90143 -33.09984 -32.78170 -31.28697 -29.36594 -28.54804 -26.84144 -25.05911 -24.39003 -22.25101 -20.34583 -19.44352 -18.66347 -17.95053 -17.29022 -16.21170 -16.09690 -15.90623 -15.71911 -15.14019 -14.46897 -14.08075 -13.86321 -13.83491 -13.51255 -13.40898 -13.26644 -12.78579 -12.65216 -12.62713 -12.35609 -12.14706 -11.89893 -11.85018 -11.54912 -11.45945 -11.04949 -10.43292 -10.23739 -10.17748 -10.10045 -9.51368 -8.71060 -8.40394 -8.09357 -7.99618 -6.42163 -3.83835 1.55257 2.28450 2.48876 3.15696 3.21210 3.27447 3.34082 3.48412 3.85130 4.19848 4.40626 4.49735 4.66522 4.73221 4.88939 4.96526 5.02306 5.10264 5.23645 5.34276 5.38744 5.42533 5.57101 5.64912 5.72016 5.85583 5.85858 5.90013 6.13277 6.23371 6.70861 6.87493 6.99159 7.08124 7.54957 8.00743 8.25411 8.58613 9.15377 9.48874 9.99714 10.75301 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035923 B = 0.003123 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.260141 B = 8962.800775 C = 9711.003697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.005 4.005 3 C -0.132 4.132 4 C -0.219 4.219 5 C 0.538 3.462 6 O -0.530 6.530 7 O -0.320 6.320 8 C 0.062 3.938 9 C 0.441 3.559 10 O -0.575 6.575 11 N -0.555 5.555 12 C -0.301 4.301 13 H 0.105 0.895 14 C 0.024 3.976 15 N -0.899 5.899 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.109 3.891 21 C -0.094 4.094 22 N -0.438 5.438 23 C 0.066 3.934 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.156 0.844 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.395 0.605 31 H 0.273 0.727 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -21.197 0.049 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.156 4.156 4 C -0.227 4.227 5 C 0.385 3.615 6 O -0.422 6.422 7 O -0.235 6.235 8 C -0.016 4.016 9 C 0.226 3.774 10 O -0.459 6.459 11 N -0.193 5.193 12 C -0.430 4.430 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.540 5.540 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.008 4.008 21 C -0.151 4.151 22 N -0.116 5.116 23 C -0.075 4.075 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.173 0.827 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.008 -21.252 0.053 24.410 hybrid contribution 0.667 0.695 0.001 0.963 sum -11.342 -20.557 0.054 23.478 Atomic orbital electron populations 1.20314 0.87681 1.03193 1.02631 1.20226 0.93675 0.85272 1.11930 1.22006 0.90302 0.98293 1.04956 1.19352 0.91739 0.90805 1.20779 1.20134 0.88020 0.81145 0.72229 1.90763 1.29243 1.73736 1.48453 1.86623 1.35329 1.18077 1.83429 1.22681 0.84119 0.91436 1.03326 1.19374 0.86576 0.85897 0.85547 1.90553 1.20424 1.79904 1.54992 1.41696 1.07524 1.05883 1.64198 1.19675 0.95083 0.80197 1.48073 0.87720 1.25291 0.94606 1.00845 0.97063 1.69607 0.98513 1.35914 1.49970 0.85871 0.77478 0.81444 0.79150 1.19796 1.20928 1.19801 1.20473 0.84805 0.93515 1.02019 1.20582 0.94588 0.96453 1.03493 1.43394 1.04981 1.06587 1.56599 1.22083 1.01543 0.80340 1.03540 0.91063 0.89838 0.92009 0.82666 0.89701 0.89698 0.77173 0.91668 0.90297 0.91738 0.88000 0.90618 0.89587 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.05 36.01 0.36 -0.24 16 2 C 0.00 -0.05 6.84 -81.89 -0.56 -0.61 16 3 C -0.13 -1.93 10.89 -37.49 -0.41 -2.34 16 4 C -0.22 -3.52 6.33 -103.01 -0.65 -4.17 16 5 C 0.54 10.11 7.95 34.33 0.27 10.39 16 6 O -0.53 -10.19 14.67 -19.30 -0.28 -10.47 16 7 O -0.32 -6.77 9.66 -47.40 -0.46 -7.22 16 8 C 0.06 1.29 5.96 36.01 0.21 1.50 16 9 C 0.44 11.20 7.86 -10.99 -0.09 11.11 16 10 O -0.57 -16.66 16.08 -14.11 -0.23 -16.89 16 11 N -0.56 -14.59 5.29 -10.96 -0.06 -14.64 16 12 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 13 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 C 0.11 1.39 6.93 -81.51 -0.56 0.83 16 21 C -0.09 -0.95 9.28 36.00 0.33 -0.62 16 22 N -0.44 -4.53 3.08 -115.00 -0.35 -4.88 16 23 C 0.07 0.36 10.39 59.85 0.62 0.98 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.34 6.92 -51.93 -0.36 -0.02 16 27 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 34 H 0.10 1.24 6.51 -51.92 -0.34 0.90 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.35 7.51 -51.93 -0.39 -0.04 16 37 H 0.09 0.33 6.88 -51.93 -0.36 -0.03 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -35.04 326.03 -6.10 -41.15 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.63 Total: 7.18 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.71 Total: 8.69 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.31 Total: -43.52 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.97 Total: -34.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.04 -6.10 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.891 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds