Wall clock time and date at job start Tue Mar 31 2020 01:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.50696 * 109.46774 * 303.37619 * 3 2 1 5 5 O 1.20833 * 119.99655 * 239.99685 * 4 3 2 6 6 O 1.34231 * 120.00640 * 60.27955 * 4 3 2 7 7 C 1.45193 * 117.00126 * 179.71955 * 6 4 3 8 8 C 1.50706 * 109.46845 * 180.02562 * 7 6 4 9 9 O 1.21293 * 119.99979 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00037 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99819 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99865 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00035 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00133 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46986 * 90.00413 * 15 13 11 17 17 H 1.48501 * 109.47421 * 210.00064 * 15 13 11 18 18 H 1.48497 * 109.47424 * 330.00160 * 15 13 11 19 19 C 1.53004 * 109.47067 * 63.37689 * 3 2 1 20 20 C 1.52992 * 109.47082 * 59.99849 * 19 3 2 21 21 C 1.53004 * 109.47319 * 59.99989 * 20 19 3 22 22 C 1.52998 * 109.46876 * 299.99766 * 21 20 19 23 23 C 1.52996 * 109.46717 * 183.37864 * 3 2 1 24 24 H 1.08997 * 109.47488 * 299.99586 * 7 6 4 25 25 H 1.08997 * 109.47515 * 60.00401 * 7 6 4 26 26 H 0.97003 * 119.99738 * 359.97438 * 10 8 7 27 27 H 0.97007 * 120.00325 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.46822 * 180.02562 * 19 3 2 29 29 H 1.08998 * 109.46756 * 299.99638 * 19 3 2 30 30 H 1.08998 * 109.47610 * 299.99907 * 20 19 3 31 31 H 1.09000 * 109.47364 * 179.97438 * 20 19 3 32 32 H 1.08996 * 109.47095 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.46846 * 59.99450 * 21 20 19 34 34 H 1.08998 * 109.47156 * 300.00070 * 22 21 20 35 35 H 1.09004 * 109.47239 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47515 * 59.99649 * 23 3 2 37 37 H 1.09006 * 109.46938 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1107 -0.7807 1.1865 5 8 3.8051 -0.2410 2.0150 6 8 2.7916 -2.0777 1.3200 7 6 3.3159 -2.7690 2.4842 8 6 2.8573 -4.2045 2.4648 9 8 2.1571 -4.6053 1.5591 10 7 3.2244 -5.0427 3.4543 11 6 2.8068 -6.3484 3.4369 12 1 2.1840 -6.7054 2.6300 13 6 3.1849 -7.2124 4.4573 14 7 2.7850 -8.4640 4.4404 15 14 4.2627 -6.5950 5.8525 16 1 3.4050 -6.0750 6.9476 17 1 5.0969 -7.7115 6.3649 18 1 5.1429 -5.5077 5.3542 19 6 3.1184 -0.6455 -1.2896 20 6 2.6080 0.1478 -2.4941 21 6 3.1173 1.5880 -2.4092 22 6 2.6070 2.2342 -1.1197 23 6 3.1173 1.4409 0.0850 24 1 4.4052 -2.7358 2.4666 25 1 2.9522 -2.2833 3.3897 26 1 3.7841 -4.7221 4.1788 27 1 3.0486 -9.0671 5.1530 28 1 4.2083 -0.6454 -1.2893 29 1 2.7555 -1.6716 -1.3500 30 1 1.5180 0.1473 -2.4942 31 1 2.9719 -0.3123 -3.4128 32 1 2.7533 2.1533 -3.2671 33 1 4.2073 1.5885 -2.4091 34 1 1.5170 2.2336 -1.1197 35 1 2.9702 3.2601 -1.0589 36 1 2.7537 1.9012 1.0036 37 1 4.2074 1.4414 0.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:13 Heat of formation + Delta-G solvation = -103.255167 kcal Electronic energy + Delta-G solvation = -21613.489736 eV Core-core repulsion = 18162.823430 eV Total energy + Delta-G solvation = -3450.666306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23519 -39.16302 -38.22272 -36.43350 -35.99563 -34.09556 -32.16992 -31.81346 -31.27175 -28.69957 -25.13274 -24.19407 -23.10429 -21.84239 -20.99752 -19.70001 -18.66525 -18.26876 -17.03114 -16.86317 -16.23626 -15.72282 -15.12507 -15.04296 -14.87779 -14.24043 -14.12473 -13.75678 -13.43731 -13.38539 -13.16965 -12.81699 -12.64437 -12.52438 -12.38397 -12.27517 -12.17426 -12.04951 -11.55229 -11.28943 -11.13201 -10.93905 -10.67734 -10.65184 -10.56689 -10.43448 -10.06948 -9.70124 -8.70719 -8.31750 -6.41107 -3.94308 1.79447 2.14218 2.51053 2.78814 2.96634 3.01723 3.10626 3.47488 3.52249 4.01559 4.08529 4.20417 4.24513 4.57432 4.66675 4.70566 4.85497 4.96263 5.05847 5.08175 5.23189 5.25640 5.36256 5.47485 5.51882 5.62567 5.64274 5.68684 5.71077 5.83387 5.89109 5.99320 6.28157 7.25537 7.40235 7.54597 7.98267 8.45103 8.81508 9.27366 9.62409 10.71101 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034783 B = 0.003595 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.797940 B = 7786.070735 C = 8063.331225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.216 3.784 3 C 0.059 3.941 4 C 0.472 3.528 5 O -0.492 6.492 6 O -0.316 6.316 7 C 0.056 3.944 8 C 0.446 3.554 9 O -0.555 6.555 10 N -0.578 5.578 11 C -0.309 4.309 12 H 0.122 0.878 13 C 0.046 3.954 14 N -0.874 5.874 15 Si 0.879 3.121 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.268 1.268 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.098 4.098 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.373 0.627 27 H 0.276 0.724 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 20.895 -9.137 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.103 4.103 3 C 0.054 3.946 4 C 0.312 3.688 5 O -0.379 6.379 6 O -0.230 6.230 7 C -0.021 4.021 8 C 0.231 3.769 9 O -0.437 6.437 10 N -0.218 5.218 11 C -0.437 4.437 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.513 5.513 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.193 1.193 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.136 4.136 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.206 0.794 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.865 20.507 -9.373 22.877 hybrid contribution 1.342 0.196 1.496 2.019 sum 5.208 20.703 -7.878 22.755 Atomic orbital electron populations 1.81231 1.11920 1.07307 1.06864 1.28053 0.93815 0.94045 0.94427 1.18170 0.83680 0.97965 0.94801 1.22952 0.78258 0.81635 0.85975 1.90688 1.35297 1.70480 1.41482 1.86569 1.68294 1.22527 1.45601 1.22857 0.99789 0.92923 0.86563 1.19147 0.86660 0.85681 0.85420 1.90619 1.40033 1.76890 1.36158 1.42025 1.46898 1.10819 1.22072 1.19428 1.30653 0.82735 1.10895 0.85991 1.25038 0.97712 0.95226 0.97878 1.69613 1.44213 1.03945 1.33541 0.86679 0.80838 0.79212 0.82768 1.19400 1.19915 1.19319 1.21738 1.02418 1.00761 0.90061 1.21605 1.01263 0.95412 0.97715 1.21607 1.01313 0.95621 0.97502 1.21628 1.01150 0.99435 0.93897 1.21588 1.02784 0.89174 1.00086 0.88952 0.89203 0.79374 0.91351 0.88883 0.88745 0.91664 0.90297 0.91392 0.91103 0.91806 0.90438 0.89904 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.19 18.54 42.15 0.78 -5.41 16 2 C 0.22 2.86 11.28 -20.76 -0.23 2.63 16 3 C 0.06 0.63 0.66 -158.45 -0.10 0.53 16 4 C 0.47 6.57 6.52 36.00 0.23 6.81 16 5 O -0.49 -7.21 15.73 -18.76 -0.30 -7.50 16 6 O -0.32 -5.40 9.56 -45.90 -0.44 -5.84 16 7 C 0.06 0.96 5.94 36.01 0.21 1.18 16 8 C 0.45 10.14 7.86 -10.98 -0.09 10.06 16 9 O -0.56 -15.11 16.08 -14.11 -0.23 -15.34 16 10 N -0.58 -13.51 5.09 -10.96 -0.06 -13.57 16 11 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 12 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 13 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 14 N -0.87 -25.00 13.96 55.50 0.77 -24.22 16 15 Si 0.88 18.81 27.74 -169.99 -4.71 14.09 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 19 C -0.11 -0.99 4.64 -26.73 -0.12 -1.12 16 20 C -0.12 -0.89 5.70 -26.73 -0.15 -1.04 16 21 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 22 C -0.12 -0.81 5.70 -26.73 -0.15 -0.96 16 23 C -0.10 -0.79 4.00 -26.73 -0.11 -0.90 16 24 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 25 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 26 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 27 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 30 H 0.06 0.56 7.23 -51.93 -0.38 0.19 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.50 7.23 -51.93 -0.38 0.12 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -33.69 318.50 -5.05 -38.75 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.76 Total: 5.53 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.92 Total: 8.70 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 1.50 Total: -43.20 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.96 Total: -28.68 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.69 -5.05 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.508 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds