Wall clock time and date at job start Tue Mar 31 2020 01:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.50696 * 109.46774 * 303.37619 * 3 2 1 5 5 O 1.20833 * 119.99655 * 239.99685 * 4 3 2 6 6 O 1.34231 * 120.00640 * 60.27955 * 4 3 2 7 7 C 1.45193 * 117.00126 * 179.71955 * 6 4 3 8 8 C 1.50706 * 109.46845 * 180.02562 * 7 6 4 9 9 O 1.21293 * 119.99979 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00037 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99819 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99865 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00035 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00133 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46986 * 90.00413 * 15 13 11 17 17 H 1.48501 * 109.47421 * 210.00064 * 15 13 11 18 18 H 1.48497 * 109.47424 * 330.00160 * 15 13 11 19 19 C 1.53004 * 109.47067 * 63.37689 * 3 2 1 20 20 C 1.52992 * 109.47082 * 59.99849 * 19 3 2 21 21 C 1.53004 * 109.47319 * 59.99989 * 20 19 3 22 22 C 1.52998 * 109.46876 * 299.99766 * 21 20 19 23 23 C 1.52996 * 109.46717 * 183.37864 * 3 2 1 24 24 H 1.08997 * 109.47488 * 299.99586 * 7 6 4 25 25 H 1.08997 * 109.47515 * 60.00401 * 7 6 4 26 26 H 0.97003 * 119.99738 * 359.97438 * 10 8 7 27 27 H 0.97007 * 120.00325 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.46822 * 180.02562 * 19 3 2 29 29 H 1.08998 * 109.46756 * 299.99638 * 19 3 2 30 30 H 1.08998 * 109.47610 * 299.99907 * 20 19 3 31 31 H 1.09000 * 109.47364 * 179.97438 * 20 19 3 32 32 H 1.08996 * 109.47095 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.46846 * 59.99450 * 21 20 19 34 34 H 1.08998 * 109.47156 * 300.00070 * 22 21 20 35 35 H 1.09004 * 109.47239 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47515 * 59.99649 * 23 3 2 37 37 H 1.09006 * 109.46938 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1107 -0.7807 1.1865 5 8 3.8051 -0.2410 2.0150 6 8 2.7916 -2.0777 1.3200 7 6 3.3159 -2.7690 2.4842 8 6 2.8573 -4.2045 2.4648 9 8 2.1571 -4.6053 1.5591 10 7 3.2244 -5.0427 3.4543 11 6 2.8068 -6.3484 3.4369 12 1 2.1840 -6.7054 2.6300 13 6 3.1849 -7.2124 4.4573 14 7 2.7850 -8.4640 4.4404 15 14 4.2627 -6.5950 5.8525 16 1 3.4050 -6.0750 6.9476 17 1 5.0969 -7.7115 6.3649 18 1 5.1429 -5.5077 5.3542 19 6 3.1184 -0.6455 -1.2896 20 6 2.6080 0.1478 -2.4941 21 6 3.1173 1.5880 -2.4092 22 6 2.6070 2.2342 -1.1197 23 6 3.1173 1.4409 0.0850 24 1 4.4052 -2.7358 2.4666 25 1 2.9522 -2.2833 3.3897 26 1 3.7841 -4.7221 4.1788 27 1 3.0486 -9.0671 5.1530 28 1 4.2083 -0.6454 -1.2893 29 1 2.7555 -1.6716 -1.3500 30 1 1.5180 0.1473 -2.4942 31 1 2.9719 -0.3123 -3.4128 32 1 2.7533 2.1533 -3.2671 33 1 4.2073 1.5885 -2.4091 34 1 1.5170 2.2336 -1.1197 35 1 2.9702 3.2601 -1.0589 36 1 2.7537 1.9012 1.0036 37 1 4.2074 1.4414 0.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731245917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:12 Heat of formation + Delta-G solvation = -125.802740 kcal Electronic energy + Delta-G solvation = -21614.467472 eV Core-core repulsion = 18162.823430 eV Total energy + Delta-G solvation = -3451.644042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29779 -40.49248 -39.64116 -37.69111 -37.01273 -36.10694 -33.88689 -32.91829 -31.88186 -30.20835 -26.67985 -25.36818 -23.73885 -22.89981 -21.73096 -21.56739 -20.55737 -19.34902 -18.16248 -18.00222 -17.52432 -17.28512 -16.79707 -15.98274 -15.69163 -15.68043 -15.44835 -14.88991 -14.69685 -14.33369 -14.29007 -14.23438 -14.11464 -13.86124 -13.51759 -13.26541 -13.17054 -13.01163 -12.82086 -12.46658 -12.16867 -12.01166 -11.95541 -11.93047 -11.59951 -11.46779 -11.25295 -11.15378 -10.62922 -10.35535 -8.46957 -6.10711 0.69473 1.01797 1.29878 1.33717 1.44408 1.47479 1.66769 1.74752 2.20079 2.52658 2.72378 3.07416 3.32763 3.47428 3.54667 3.85952 4.06223 4.07316 4.12330 4.14797 4.16560 4.37532 4.47886 4.64721 4.79832 4.97799 5.05811 5.09251 5.13661 5.18524 5.32689 5.36066 5.45984 5.50672 5.83850 6.20138 6.35804 6.50135 6.76010 7.24134 7.76591 8.69761 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034783 B = 0.003595 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.797940 B = 7786.070735 C = 8063.331225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.232 3.768 3 C 0.061 3.939 4 C 0.474 3.526 5 O -0.494 6.494 6 O -0.342 6.342 7 C 0.065 3.935 8 C 0.446 3.554 9 O -0.610 6.610 10 N -0.574 5.574 11 C -0.335 4.335 12 H 0.059 0.941 13 C -0.008 4.008 14 N -0.926 5.926 15 Si 0.962 3.038 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.227 1.227 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.095 4.095 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.394 0.606 27 H 0.282 0.718 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 23.955 -8.207 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.086 4.086 3 C 0.056 3.944 4 C 0.315 3.685 5 O -0.380 6.380 6 O -0.257 6.257 7 C -0.012 4.012 8 C 0.233 3.767 9 O -0.495 6.495 10 N -0.216 5.216 11 C -0.464 4.464 12 H 0.077 0.923 13 C -0.208 4.208 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.181 1.181 17 H -0.196 1.196 18 H -0.150 1.150 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.133 4.133 24 H 0.147 0.853 25 H 0.135 0.865 26 H 0.230 0.770 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.937 23.604 -8.446 26.011 hybrid contribution 0.315 -0.786 1.101 1.389 sum 7.252 22.818 -7.345 25.044 Atomic orbital electron populations 1.81231 1.13488 1.09011 1.08433 1.28600 0.94428 0.92559 0.93006 1.18548 0.81876 0.99511 0.94430 1.23401 0.78040 0.80499 0.86568 1.90681 1.35528 1.70170 1.41655 1.86574 1.69096 1.24326 1.45729 1.22730 1.01709 0.88828 0.87894 1.20227 0.84770 0.87887 0.83831 1.90597 1.42133 1.78607 1.38142 1.41790 1.47350 1.09348 1.23129 1.18997 1.31670 0.85357 1.10356 0.92331 1.26121 0.98912 0.94876 1.00896 1.69786 1.45785 1.05891 1.35119 0.85405 0.78803 0.79812 0.77823 1.18111 1.19646 1.14988 1.21829 1.03917 0.99564 0.89680 1.21620 1.00030 0.96693 0.97513 1.21619 1.02478 0.94141 0.97380 1.21647 1.00088 1.00504 0.93619 1.21708 1.03931 0.86936 1.00705 0.85260 0.86474 0.76963 0.90794 0.86261 0.91030 0.93732 0.88847 0.90382 0.89072 0.93609 0.88187 0.90309 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.26 18.54 20.01 0.37 -13.89 16 2 C 0.23 6.17 11.28 89.44 1.01 7.18 16 3 C 0.06 1.23 0.66 -54.73 -0.04 1.19 16 4 C 0.47 12.22 6.52 71.23 0.46 12.69 16 5 O -0.49 -12.83 15.73 21.94 0.35 -12.48 16 6 O -0.34 -11.30 9.56 -45.07 -0.43 -11.73 16 7 C 0.07 2.08 5.94 71.24 0.42 2.50 16 8 C 0.45 20.31 7.86 87.66 0.69 21.00 16 9 O -0.61 -34.68 16.08 15.73 0.25 -34.43 16 10 N -0.57 -26.61 5.09 -306.98 -1.56 -28.17 16 11 C -0.34 -19.34 10.16 84.04 0.85 -18.48 16 12 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 13 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 14 N -0.93 -54.74 13.96 21.66 0.30 -54.44 16 15 Si 0.96 37.35 27.74 68.60 1.90 39.25 16 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 17 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 18 H -0.23 -7.26 6.52 99.48 0.65 -6.61 16 19 C -0.11 -1.81 4.64 30.59 0.14 -1.67 16 20 C -0.12 -1.55 5.70 30.59 0.17 -1.38 16 21 C -0.12 -1.00 5.92 30.60 0.18 -0.82 16 22 C -0.12 -1.26 5.70 30.60 0.17 -1.08 16 23 C -0.09 -1.26 4.00 30.59 0.12 -1.14 16 24 H 0.13 3.22 8.13 -2.39 -0.02 3.20 16 25 H 0.12 3.15 8.13 -2.39 -0.02 3.13 16 26 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 27 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 30 H 0.04 0.76 7.23 -2.39 -0.02 0.74 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.65 7.23 -2.39 -0.02 0.64 16 35 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.12 1.13 8.10 -2.38 -0.02 1.11 16 Total: -1.00 -79.53 318.50 6.35 -73.18 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.51 Total: 22.69 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 4.67 Total: 20.02 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -0.89 Total: -96.50 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: 0.17 Total: -58.64 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.90 Total: 39.25 kcal Total: -79.53 6.35 -73.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.625 kcal (2) G-P(sol) polarization free energy of solvation -79.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds